Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 120.00253 * 2 1 4 4 C 1.50699 * 119.99639 * 179.97438 * 2 1 3 5 5 C 1.53008 * 109.46970 * 95.00608 * 4 2 1 6 6 N 1.46497 * 109.46990 * 179.97438 * 5 4 2 7 7 C 1.34784 * 119.99660 * 180.02562 * 6 5 4 8 8 O 1.21589 * 120.00109 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99796 * 180.02562 * 7 6 5 10 10 C 1.39939 * 119.99758 * 174.73723 * 9 7 6 11 11 C 1.38956 * 120.03570 * 326.32472 * 10 9 7 12 12 C 1.38156 * 120.07081 * 180.02562 * 11 10 9 13 13 C 1.38175 * 120.13567 * 359.72119 * 12 11 10 14 14 C 1.38905 * 120.06692 * 0.55652 * 13 12 11 15 15 O 1.35755 * 120.03289 * 179.72231 * 14 13 12 16 16 C 1.34825 * 117.00011 * 173.82163 * 15 14 13 17 17 H 1.07996 * 119.99945 * 354.59785 * 16 15 14 18 18 C 1.38654 * 119.99933 * 174.60004 * 16 15 14 19 19 N 1.31562 * 119.99967 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99998 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.46833 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47194 * 119.99906 * 20 18 16 23 23 H 1.48503 * 109.46815 * 240.00051 * 20 18 16 24 24 C 1.38708 * 120.03895 * 146.35779 * 10 9 7 25 25 H 1.07997 * 120.00116 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00148 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47460 * 270.00051 * 3 2 1 28 28 H 1.09003 * 109.47058 * 30.00200 * 3 2 1 29 29 H 1.08997 * 109.47288 * 149.99581 * 3 2 1 30 30 H 1.08993 * 109.47869 * 335.00504 * 4 2 1 31 31 H 1.09001 * 109.47023 * 214.99974 * 4 2 1 32 32 H 1.09001 * 109.46888 * 59.99647 * 5 4 2 33 33 H 1.09001 * 109.46731 * 299.99546 * 5 4 2 34 34 H 0.96996 * 120.00079 * 359.97438 * 6 5 4 35 35 H 0.97001 * 120.00264 * 354.72212 * 9 7 6 36 36 H 1.08002 * 119.96782 * 0.02562 * 11 10 9 37 37 H 1.07998 * 119.93391 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.96247 * 180.28112 * 13 12 11 39 39 H 0.97000 * 120.00104 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.06084 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 7 3.1604 -2.9530 -1.4357 7 6 3.5860 -3.4858 -2.5983 8 8 3.3613 -2.9140 -3.6475 9 7 4.2599 -4.6531 -2.5978 10 6 4.6055 -5.2619 -3.8095 11 6 3.7644 -5.1483 -4.9097 12 6 4.1047 -5.7496 -6.1062 13 6 5.2845 -6.4606 -6.2144 14 6 6.1267 -6.5826 -5.1165 15 8 7.2830 -7.2860 -5.2220 16 6 8.1149 -7.2590 -4.1614 17 1 7.8908 -6.6262 -3.3154 18 6 9.2581 -8.0436 -4.1568 19 7 9.5308 -8.8148 -5.1872 20 14 10.4110 -8.0057 -2.6875 21 1 9.8828 -7.0639 -1.6681 22 1 10.5103 -9.3663 -2.1009 23 1 11.7568 -7.5562 -3.1259 24 6 5.7877 -5.9800 -3.9133 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 2.2453 1.6197 -1.0276 28 1 1.4745 2.0647 0.5139 29 1 3.0159 1.1747 0.5139 30 1 1.4386 -2.0853 0.4351 31 1 2.9742 -1.1987 0.5900 32 1 3.0524 -0.9043 -1.8709 33 1 1.5167 -1.7910 -2.0257 34 1 3.3400 -3.4089 -0.5987 35 1 4.5055 -5.0710 -1.7576 36 1 2.8437 -4.5895 -4.8296 37 1 3.4496 -5.6596 -6.9600 38 1 5.5500 -6.9256 -7.1523 39 1 10.3303 -9.3640 -5.1838 40 1 6.4430 -6.0697 -3.0595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836290905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = -39.416363 kcal Electronic energy + Delta-G solvation = -21758.954728 eV Core-core repulsion = 18345.975113 eV Total energy + Delta-G solvation = -3412.979615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69792 -40.46845 -38.47062 -37.65634 -35.65194 -35.36006 -34.20543 -31.27196 -30.57152 -29.52912 -28.07654 -27.27858 -24.76091 -23.48908 -23.20029 -21.87742 -20.25969 -19.50685 -19.26533 -18.75457 -17.44414 -17.04393 -16.69188 -16.36931 -16.13557 -15.80239 -15.65483 -15.50198 -15.37254 -15.14201 -14.56578 -14.27279 -14.09017 -14.02189 -13.54687 -13.24878 -12.91984 -12.77623 -12.71268 -12.55173 -12.38350 -12.17190 -12.07576 -11.95667 -11.54770 -11.29192 -11.14997 -10.72332 -10.19967 -9.94606 -9.31760 -8.83049 -8.45159 -6.13713 0.46023 0.71977 1.23540 1.36884 1.45307 1.55116 1.62018 2.03872 2.18951 2.86095 3.14625 3.19772 3.51223 3.94987 3.99488 4.04908 4.13843 4.33079 4.34863 4.46438 4.59713 4.65069 4.69293 4.74484 4.84047 4.96852 5.00429 5.06500 5.08283 5.12817 5.16842 5.34621 5.39897 5.49511 5.69021 5.70174 5.74686 5.94642 5.98157 6.03444 6.22034 6.94520 6.99435 7.43949 7.79373 8.78147 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020539 B = 0.002950 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.952260 B = 9489.244354 C =10607.728826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 C -0.123 4.123 4 C -0.087 4.087 5 C 0.146 3.854 6 N -0.725 5.725 7 C 0.700 3.300 8 O -0.612 6.612 9 N -0.673 5.673 10 C 0.206 3.794 11 C -0.200 4.200 12 C -0.051 4.051 13 C -0.215 4.215 14 C 0.135 3.865 15 O -0.226 6.226 16 C -0.411 4.411 17 H 0.102 0.898 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.019 2.981 21 H -0.249 1.249 22 H -0.268 1.268 23 H -0.272 1.272 24 C -0.260 4.260 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.415 0.585 35 H 0.420 0.580 36 H 0.128 0.872 37 H 0.153 0.847 38 H 0.120 0.880 39 H 0.272 0.728 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.385 14.796 15.015 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.136 4.136 3 C -0.180 4.180 4 C -0.125 4.125 5 C 0.022 3.978 6 N -0.382 5.382 7 C 0.400 3.600 8 O -0.491 6.491 9 N -0.322 5.322 10 C 0.111 3.889 11 C -0.221 4.221 12 C -0.069 4.069 13 C -0.235 4.235 14 C 0.084 3.916 15 O -0.133 6.133 16 C -0.487 4.487 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.558 5.558 20 Si 0.839 3.161 21 H -0.172 1.172 22 H -0.193 1.193 23 H -0.197 1.197 24 C -0.282 4.282 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.258 0.742 36 H 0.146 0.854 37 H 0.171 0.829 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.400 15.100 13.904 25.661 hybrid contribution 0.910 -0.641 0.913 1.439 sum -14.490 14.459 14.817 25.270 Atomic orbital electron populations 1.23915 0.95279 1.02678 1.00983 1.21672 0.95575 0.95553 1.00821 1.20919 1.00468 0.94322 1.02300 1.20834 1.01561 0.95597 0.94478 1.21197 0.95299 0.83359 0.97943 1.44968 1.60296 1.25840 1.07108 1.16066 0.78663 0.80358 0.84889 1.90927 1.63023 1.63130 1.32045 1.42432 1.58884 1.22719 1.08131 1.17180 0.91964 0.93402 0.86391 1.20858 1.01430 1.06376 0.93452 1.20907 0.94582 0.93732 0.97723 1.20470 0.97168 1.08267 0.97624 1.19584 0.86859 0.91069 0.94113 1.83987 1.25746 1.62429 1.41089 1.21825 1.02615 1.26963 0.97317 0.88054 1.26593 0.98962 0.94620 1.01889 1.70195 1.27245 1.26561 1.31807 0.84522 0.76761 0.79021 0.75845 1.17226 1.19303 1.19688 1.20795 0.98571 1.09752 0.99123 0.87978 0.87643 0.91715 0.91047 0.91319 0.89323 0.89245 0.92676 0.92521 0.74820 0.74201 0.85388 0.82897 0.86239 0.91857 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 13.89 67.78 0.94 -1.21 16 2 C -0.14 -1.59 5.31 -16.49 -0.09 -1.68 16 3 C -0.12 -1.31 10.03 71.23 0.71 -0.59 16 4 C -0.09 -0.93 5.49 29.85 0.16 -0.77 16 5 C 0.15 2.51 5.66 86.38 0.49 3.00 16 6 N -0.73 -13.45 5.56 -478.51 -2.66 -16.11 16 7 C 0.70 20.19 8.30 179.05 1.49 21.68 16 8 O -0.61 -23.03 14.05 -4.00 -0.06 -23.09 16 9 N -0.67 -19.38 5.35 -317.22 -1.70 -21.08 16 10 C 0.21 7.80 6.27 38.13 0.24 8.04 16 11 C -0.20 -7.57 8.65 22.42 0.19 -7.37 16 12 C -0.05 -1.89 10.03 22.24 0.22 -1.66 16 13 C -0.22 -9.48 9.99 22.41 0.22 -9.26 16 14 C 0.13 6.79 6.64 22.56 0.15 6.94 16 15 O -0.23 -13.54 9.76 -22.74 -0.22 -13.76 16 16 C -0.41 -23.58 9.44 67.92 0.64 -22.94 16 17 H 0.10 5.30 5.30 -2.91 -0.02 5.28 16 18 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 19 N -0.92 -56.05 13.67 21.61 0.30 -55.75 16 20 Si 1.02 42.01 29.55 68.60 2.03 44.04 16 21 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 C -0.26 -11.42 9.04 22.51 0.20 -11.22 16 25 H 0.10 1.05 7.99 -2.91 -0.02 1.02 16 26 H 0.11 1.02 8.04 -2.91 -0.02 0.99 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.63 8.06 -2.39 -0.02 0.61 16 29 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.09 0.75 7.99 -2.39 -0.02 0.73 16 31 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.41 4.68 8.49 -92.71 -0.79 3.90 16 35 H 0.42 8.96 8.83 -92.71 -0.82 8.14 16 36 H 0.13 4.72 6.43 -2.91 -0.02 4.70 16 37 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 38 H 0.12 5.10 8.06 -2.91 -0.02 5.07 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.13 5.55 5.72 -2.91 -0.02 5.54 16 Total: -1.00 -76.32 345.37 3.20 -73.12 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: -0.54 Total: 30.49 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 6.05 Total: -17.86 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -4.06 Total: -92.94 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.28 Total: -36.85 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -76.32 3.20 -73.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836290905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.708 kcal (2) G-P(sol) polarization free energy of solvation -76.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds