Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 C 1.53502 * 114.20510 * 174.99911 * 3 2 1 5 5 N 1.47068 * 87.98448 * 139.85258 * 4 3 2 6 6 C 1.34777 * 136.05557 * 152.83743 * 5 4 3 7 7 O 1.21590 * 119.99893 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99878 * 180.02562 * 6 5 4 9 9 C 1.39945 * 119.99735 * 175.49881 * 8 6 5 10 10 C 1.38954 * 120.04037 * 35.12260 * 9 8 6 11 11 C 1.38153 * 120.06848 * 179.70334 * 10 9 8 12 12 C 1.38167 * 120.14148 * 0.27957 * 11 10 9 13 13 C 1.38907 * 120.06428 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.02915 * 179.97438 * 13 12 11 15 15 C 1.34839 * 116.99619 * 174.66668 * 14 13 12 16 16 H 1.07999 * 120.00056 * 5.04415 * 15 14 13 17 17 C 1.38648 * 119.99684 * 185.04116 * 15 14 13 18 18 N 1.31561 * 120.00119 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47200 * 59.99933 * 19 17 15 21 21 H 1.48504 * 109.47256 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47168 * 300.00171 * 19 17 15 23 23 C 1.38708 * 120.03118 * 215.40201 * 9 8 6 24 24 C 1.47065 * 87.88508 * 333.10258 * 5 4 3 25 25 H 1.09003 * 109.47592 * 59.99822 * 1 2 3 26 26 H 1.09003 * 109.46870 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47408 * 299.99591 * 1 2 3 28 28 H 1.09004 * 109.46947 * 240.00176 * 2 1 3 29 29 H 1.08991 * 109.47192 * 120.00406 * 2 1 3 30 30 H 1.09002 * 113.28192 * 41.93682 * 3 2 1 31 31 H 1.08997 * 113.46156 * 25.07599 * 4 3 2 32 32 H 1.08997 * 113.51980 * 254.64548 * 4 3 2 33 33 H 0.96996 * 119.99909 * 355.49454 * 8 6 5 34 34 H 1.08003 * 119.96476 * 359.97438 * 10 9 8 35 35 H 1.08006 * 119.92851 * 180.29976 * 11 10 9 36 36 H 1.07991 * 119.96522 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00228 * 179.97438 * 18 17 15 38 38 H 1.07997 * 120.07106 * 0.02562 * 23 9 8 39 39 H 1.09003 * 113.46472 * 141.67702 * 24 5 4 40 40 H 1.08992 * 113.46957 * 272.11588 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5647 1.5711 0.1220 5 7 3.5001 2.6582 -0.8663 6 6 4.2341 3.7507 -1.1566 7 8 5.2271 4.0070 -0.5034 8 7 3.8673 4.5589 -2.1708 9 6 4.5738 5.7425 -2.4128 10 6 5.9465 5.7887 -2.2022 11 6 6.6454 6.9551 -2.4468 12 6 5.9816 8.0805 -2.8958 13 6 4.6084 8.0425 -3.1022 14 8 3.9568 9.1489 -3.5429 15 6 2.6458 9.0142 -3.8281 16 1 2.1423 8.0805 -3.6257 17 6 1.9442 10.0746 -4.3811 18 7 2.5577 11.2119 -4.6281 19 14 0.1278 9.8883 -4.7755 20 1 -0.6192 9.5738 -3.5312 21 1 -0.3855 11.1557 -5.3548 22 1 -0.0557 8.7870 -5.7546 23 6 3.9035 6.8725 -2.8577 24 6 2.2783 2.0325 -1.3940 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.4813 2.0970 0.6692 31 1 4.1040 0.6930 -0.2332 32 1 3.8961 1.8991 1.1072 33 1 3.1138 4.3202 -2.7330 34 1 6.4683 4.9107 -1.8511 35 1 7.7131 6.9871 -2.2870 36 1 6.5308 8.9906 -3.0865 37 1 2.0669 11.9535 -5.0153 38 1 2.8359 6.8405 -3.0174 39 1 1.5172 2.7523 -1.6950 40 1 2.4716 1.2787 -2.1571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836291570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = 10.158978 kcal Electronic energy + Delta-G solvation = -22261.405587 eV Core-core repulsion = 18850.575721 eV Total energy + Delta-G solvation = -3410.829867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82768 -39.36276 -38.25424 -36.28915 -34.16114 -33.63971 -32.21408 -29.84601 -28.92766 -27.84478 -26.29747 -25.28340 -24.02315 -21.82966 -21.73348 -20.70185 -19.57621 -18.27301 -17.86880 -17.18466 -16.23855 -15.91207 -15.22591 -15.01415 -14.81524 -14.56905 -14.25558 -14.06244 -13.82301 -13.54282 -13.31213 -12.94459 -12.84702 -12.59060 -12.31158 -12.12104 -11.71328 -11.51193 -11.42675 -11.33669 -11.08600 -10.97057 -10.76663 -10.65523 -10.45719 -9.94262 -9.54822 -9.43028 -8.86328 -8.77047 -7.68074 -7.10858 -6.42847 -4.02725 2.06559 2.38498 2.50490 3.12016 3.12881 3.16225 3.29694 3.81834 3.96012 3.97856 4.45120 4.61916 4.65395 4.78388 4.95843 5.09191 5.11953 5.12673 5.21936 5.30495 5.32167 5.36228 5.49542 5.59868 5.68191 5.76397 5.80626 5.98749 6.05507 6.12993 6.29734 6.34440 6.65508 6.95956 7.03963 7.15640 7.33607 7.42223 7.46178 7.86578 8.01389 8.04465 8.66501 9.02387 9.73496 10.75310 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.003817 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.496726 B = 7333.517028 C = 9108.210162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.125 4.125 4 C 0.130 3.870 5 N -0.668 5.668 6 C 0.734 3.266 7 O -0.568 6.568 8 N -0.678 5.678 9 C 0.196 3.804 10 C -0.204 4.204 11 C -0.064 4.064 12 C -0.201 4.201 13 C 0.168 3.832 14 O -0.177 6.177 15 C -0.393 4.393 16 H 0.089 0.911 17 C 0.040 3.960 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.271 1.271 23 C -0.257 4.257 24 C 0.101 3.899 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.401 0.599 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.270 0.730 38 H 0.129 0.871 39 H 0.076 0.924 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 -21.386 6.135 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.144 4.144 4 C 0.006 3.994 5 N -0.408 5.408 6 C 0.438 3.562 7 O -0.445 6.445 8 N -0.324 5.324 9 C 0.102 3.898 10 C -0.225 4.225 11 C -0.083 4.083 12 C -0.221 4.221 13 C 0.114 3.886 14 O -0.080 6.080 15 C -0.469 4.469 16 H 0.106 0.894 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.764 3.236 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.279 4.279 24 C -0.023 4.023 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.236 0.764 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.094 0.906 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.080 -20.534 6.444 21.740 hybrid contribution -1.418 -0.239 -0.550 1.539 sum -4.498 -20.773 5.894 22.056 Atomic orbital electron populations 1.21766 0.95326 1.01751 1.02167 1.21413 0.96335 0.94554 1.02618 1.23034 0.96012 0.97730 0.97625 1.22866 0.95124 0.88128 0.93244 1.48614 1.29493 1.24315 1.38428 1.15204 0.81759 0.78657 0.80596 1.90934 1.26341 1.73604 1.53586 1.42481 1.35517 1.22172 1.32279 1.17207 0.90556 0.83663 0.98368 1.20714 0.92244 0.99657 1.09885 1.20552 0.98602 0.92036 0.97117 1.20255 0.91930 0.99631 1.10246 1.19047 0.91453 0.86333 0.91739 1.84011 1.23858 1.28195 1.71969 1.21221 0.82131 1.00867 1.42673 0.89355 1.25261 1.00239 0.94623 0.96336 1.70027 1.36809 1.02654 1.40361 0.85808 0.80698 0.78068 0.78976 1.19597 1.20256 1.19584 1.20787 1.00446 0.92281 1.14370 1.23064 0.86267 0.96137 0.96822 0.92502 0.92643 0.92555 0.91407 0.91177 0.87673 0.90063 0.90384 0.76426 0.85757 0.86610 0.86380 0.91997 0.85370 0.90573 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.90 37.16 0.37 -0.36 16 2 C -0.11 -0.53 5.86 -26.73 -0.16 -0.69 16 3 C -0.12 -0.84 3.98 -90.24 -0.36 -1.20 16 4 C 0.13 1.18 8.20 -8.50 -0.07 1.11 16 5 N -0.67 -8.22 3.69 -191.18 -0.71 -8.93 16 6 C 0.73 12.45 8.64 -86.92 -0.75 11.70 16 7 O -0.57 -11.78 14.55 5.29 0.08 -11.71 16 8 N -0.68 -11.35 5.34 -14.24 -0.08 -11.42 16 9 C 0.20 3.97 6.29 -83.71 -0.53 3.44 16 10 C -0.20 -4.17 8.69 -39.35 -0.34 -4.51 16 11 C -0.06 -1.27 10.03 -39.64 -0.40 -1.66 16 12 C -0.20 -4.44 9.99 -39.36 -0.39 -4.84 16 13 C 0.17 4.18 6.65 -39.14 -0.26 3.92 16 14 O -0.18 -5.10 9.76 0.01 0.00 -5.10 16 15 C -0.39 -11.00 9.49 30.88 0.29 -10.71 16 16 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.43 13.67 55.48 0.76 -24.68 16 19 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 23 C -0.26 -5.75 9.08 -39.21 -0.36 -6.11 16 24 C 0.10 0.80 7.86 -8.64 -0.07 0.74 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.30 7.83 -51.93 -0.41 -0.11 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.11 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 5.49 8.54 -40.82 -0.35 5.14 16 34 H 0.12 2.54 6.22 -52.48 -0.33 2.22 16 35 H 0.12 1.91 8.06 -52.48 -0.42 1.48 16 36 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -34.33 338.85 -8.40 -42.73 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.42 Total: 6.79 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -3.12 Total: -8.17 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.02 Total: -45.02 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.08 Total: -16.81 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.33 -8.40 -42.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836291570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.885 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds