Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46815 * 2 1 4 4 C 1.53502 * 114.20510 * 174.99911 * 3 2 1 5 5 N 1.47068 * 87.98448 * 139.85258 * 4 3 2 6 6 C 1.34777 * 136.05557 * 152.83743 * 5 4 3 7 7 O 1.21590 * 119.99893 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99878 * 180.02562 * 6 5 4 9 9 C 1.39945 * 119.99735 * 175.49881 * 8 6 5 10 10 C 1.38954 * 120.04037 * 35.12260 * 9 8 6 11 11 C 1.38153 * 120.06848 * 179.70334 * 10 9 8 12 12 C 1.38167 * 120.14148 * 0.27957 * 11 10 9 13 13 C 1.38907 * 120.06428 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.02915 * 179.97438 * 13 12 11 15 15 C 1.34839 * 116.99619 * 174.66668 * 14 13 12 16 16 H 1.07999 * 120.00056 * 5.04415 * 15 14 13 17 17 C 1.38648 * 119.99684 * 185.04116 * 15 14 13 18 18 N 1.31561 * 120.00119 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99981 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47200 * 59.99933 * 19 17 15 21 21 H 1.48504 * 109.47256 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47168 * 300.00171 * 19 17 15 23 23 C 1.38708 * 120.03118 * 215.40201 * 9 8 6 24 24 C 1.47065 * 87.88508 * 333.10258 * 5 4 3 25 25 H 1.09003 * 109.47592 * 59.99822 * 1 2 3 26 26 H 1.09003 * 109.46870 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47408 * 299.99591 * 1 2 3 28 28 H 1.09004 * 109.46947 * 240.00176 * 2 1 3 29 29 H 1.08991 * 109.47192 * 120.00406 * 2 1 3 30 30 H 1.09002 * 113.28192 * 41.93682 * 3 2 1 31 31 H 1.08997 * 113.46156 * 25.07599 * 4 3 2 32 32 H 1.08997 * 113.51980 * 254.64548 * 4 3 2 33 33 H 0.96996 * 119.99909 * 355.49454 * 8 6 5 34 34 H 1.08003 * 119.96476 * 359.97438 * 10 9 8 35 35 H 1.08006 * 119.92851 * 180.29976 * 11 10 9 36 36 H 1.07991 * 119.96522 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00228 * 179.97438 * 18 17 15 38 38 H 1.07997 * 120.07106 * 0.02562 * 23 9 8 39 39 H 1.09003 * 113.46472 * 141.67702 * 24 5 4 40 40 H 1.08992 * 113.46957 * 272.11588 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5647 1.5711 0.1220 5 7 3.5001 2.6582 -0.8663 6 6 4.2341 3.7507 -1.1566 7 8 5.2271 4.0070 -0.5034 8 7 3.8673 4.5589 -2.1708 9 6 4.5738 5.7425 -2.4128 10 6 5.9465 5.7887 -2.2022 11 6 6.6454 6.9551 -2.4468 12 6 5.9816 8.0805 -2.8958 13 6 4.6084 8.0425 -3.1022 14 8 3.9568 9.1489 -3.5429 15 6 2.6458 9.0142 -3.8281 16 1 2.1423 8.0805 -3.6257 17 6 1.9442 10.0746 -4.3811 18 7 2.5577 11.2119 -4.6281 19 14 0.1278 9.8883 -4.7755 20 1 -0.6192 9.5738 -3.5312 21 1 -0.3855 11.1557 -5.3548 22 1 -0.0557 8.7870 -5.7546 23 6 3.9035 6.8725 -2.8577 24 6 2.2783 2.0325 -1.3940 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.4813 2.0970 0.6692 31 1 4.1040 0.6930 -0.2332 32 1 3.8961 1.8991 1.1072 33 1 3.1138 4.3202 -2.7330 34 1 6.4683 4.9107 -1.8511 35 1 7.7131 6.9871 -2.2870 36 1 6.5308 8.9906 -3.0865 37 1 2.0669 11.9535 -5.0153 38 1 2.8359 6.8405 -3.0174 39 1 1.5172 2.7523 -1.6950 40 1 2.4716 1.2787 -2.1571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836291570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = -12.124332 kcal Electronic energy + Delta-G solvation = -22262.371864 eV Core-core repulsion = 18850.575721 eV Total energy + Delta-G solvation = -3411.796144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93693 -40.82649 -39.71049 -37.99033 -35.66225 -34.33357 -34.14982 -31.24229 -30.55016 -29.08601 -27.28592 -26.99828 -24.80118 -23.50404 -23.13304 -21.60793 -20.75984 -19.74866 -19.45551 -18.74617 -17.43760 -17.08284 -16.75552 -16.55108 -16.07726 -15.78768 -15.71907 -15.48823 -15.13782 -14.81570 -14.56002 -14.21961 -14.06091 -13.57997 -13.46913 -13.27243 -13.05216 -12.83302 -12.67325 -12.59645 -12.46247 -12.14446 -11.90961 -11.82563 -11.46956 -11.29866 -11.22963 -11.01480 -10.72809 -9.85567 -9.34087 -8.86788 -8.46027 -6.15310 0.41677 0.69140 1.30963 1.35791 1.46878 1.52496 1.97364 2.18494 2.74712 2.83413 3.16248 3.30294 3.48739 3.91966 3.98099 4.09957 4.31286 4.32372 4.34001 4.44367 4.53273 4.55664 4.57599 4.65710 4.70356 4.71745 4.80979 4.96820 5.01870 5.10929 5.22145 5.28574 5.38967 5.40452 5.47795 5.56483 5.66055 5.66876 6.01423 6.11393 6.18736 6.83567 6.97860 7.37700 7.76975 8.76797 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.003817 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.496726 B = 7333.517028 C = 9108.210162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.106 4.106 4 C 0.122 3.878 5 N -0.672 5.672 6 C 0.727 3.273 7 O -0.614 6.614 8 N -0.672 5.672 9 C 0.202 3.798 10 C -0.201 4.201 11 C -0.051 4.051 12 C -0.213 4.213 13 C 0.136 3.864 14 O -0.225 6.225 15 C -0.416 4.416 16 H 0.102 0.898 17 C -0.022 4.022 18 N -0.920 5.920 19 Si 1.019 2.981 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.259 4.259 24 C 0.098 3.902 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.416 0.584 34 H 0.130 0.870 35 H 0.155 0.845 36 H 0.121 0.879 37 H 0.273 0.727 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 -24.562 6.399 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.125 4.125 4 C 0.000 4.000 5 N -0.411 5.411 6 C 0.430 3.570 7 O -0.494 6.494 8 N -0.319 5.319 9 C 0.107 3.893 10 C -0.222 4.222 11 C -0.070 4.070 12 C -0.233 4.233 13 C 0.084 3.916 14 O -0.131 6.131 15 C -0.492 4.492 16 H 0.120 0.880 17 C -0.219 4.219 18 N -0.558 5.558 19 Si 0.838 3.162 20 H -0.182 1.182 21 H -0.197 1.197 22 H -0.178 1.178 23 C -0.281 4.281 24 C -0.024 4.024 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.253 0.747 34 H 0.148 0.852 35 H 0.172 0.828 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.100 0.900 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.422 -23.816 6.726 25.140 hybrid contribution -0.862 0.491 -0.498 1.110 sum -5.284 -23.325 6.228 24.713 Atomic orbital electron populations 1.21774 0.95234 1.02156 1.01959 1.21384 0.96255 0.92916 1.03631 1.22914 0.94123 0.99026 0.96470 1.23211 0.97149 0.87531 0.92149 1.48774 1.29863 1.23374 1.39041 1.15384 0.81751 0.79654 0.80164 1.90887 1.28495 1.75061 1.54938 1.42337 1.35704 1.21080 1.32763 1.17226 0.90836 0.84317 0.96969 1.20984 0.92432 1.00014 1.08724 1.20931 1.00406 0.90633 0.95008 1.20489 0.91231 1.00814 1.10735 1.19558 0.92661 0.86593 0.92747 1.83983 1.24558 1.30349 1.74213 1.21782 0.82441 1.01838 1.43141 0.88030 1.26604 1.05739 0.93880 0.95697 1.70181 1.39272 1.03902 1.42438 0.84651 0.73607 0.78585 0.79387 1.18239 1.19730 1.17838 1.20792 1.00475 0.92291 1.14581 1.23415 0.84375 0.96422 0.98171 0.92595 0.91967 0.92946 0.90254 0.90352 0.88174 0.87956 0.91512 0.74696 0.85185 0.82778 0.86047 0.91790 0.85323 0.89968 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 71.98 0.71 -0.31 16 2 C -0.10 -0.64 5.86 30.59 0.18 -0.46 16 3 C -0.11 -1.12 3.98 -10.55 -0.04 -1.17 16 4 C 0.12 1.92 8.20 83.18 0.68 2.61 16 5 N -0.67 -15.13 3.69 -877.03 -3.24 -18.36 16 6 C 0.73 23.72 8.64 179.05 1.55 25.27 16 7 O -0.61 -25.01 14.55 -4.00 -0.06 -25.07 16 8 N -0.67 -21.59 5.34 -317.23 -1.69 -23.28 16 9 C 0.20 8.05 6.29 38.13 0.24 8.29 16 10 C -0.20 -7.95 8.69 22.42 0.19 -7.76 16 11 C -0.05 -1.96 10.03 22.23 0.22 -1.73 16 12 C -0.21 -9.53 9.99 22.41 0.22 -9.31 16 13 C 0.14 6.95 6.65 22.56 0.15 7.10 16 14 O -0.22 -13.59 9.76 -22.90 -0.22 -13.81 16 15 C -0.42 -24.07 9.49 67.92 0.64 -23.43 16 16 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 17 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 18 N -0.92 -56.32 13.67 21.61 0.30 -56.03 16 19 Si 1.02 42.04 29.55 68.60 2.03 44.07 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 23 C -0.26 -11.73 9.08 22.51 0.20 -11.52 16 24 C 0.10 1.26 7.86 83.09 0.65 1.91 16 25 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.08 0.35 7.83 -2.38 -0.02 0.34 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 1.21 8.12 -2.39 -0.02 1.19 16 31 H 0.10 1.22 8.10 -2.39 -0.02 1.20 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.42 10.65 8.54 -92.71 -0.79 9.86 16 34 H 0.13 5.12 6.22 -2.91 -0.02 5.10 16 35 H 0.15 4.65 8.06 -2.91 -0.02 4.62 16 36 H 0.12 5.24 8.06 -2.92 -0.02 5.22 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.13 5.68 5.63 -2.91 -0.02 5.67 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 0.94 7.89 -2.39 -0.02 0.92 16 Total: -1.00 -78.04 338.85 3.46 -74.58 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.27 Total: 29.17 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 6.08 Total: -11.26 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -4.64 Total: -97.67 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.28 Total: -38.89 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -78.04 3.46 -74.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836291570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.456 kcal (2) G-P(sol) polarization free energy of solvation -78.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds