Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31754 * 1 3 3 O 1.35641 * 120.00091 * 2 1 4 4 C 1.35952 * 117.99803 * 174.85284 * 3 2 1 5 5 C 1.38747 * 119.99276 * 5.47493 * 4 3 2 6 6 C 1.38082 * 120.01434 * 180.02562 * 5 4 3 7 7 C 1.38844 * 119.98854 * 0.02562 * 6 5 4 8 8 N 1.40131 * 120.01417 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99809 * 33.17008 * 8 7 6 10 10 O 1.21592 * 120.00177 * 5.18376 * 9 8 7 11 11 N 1.34771 * 120.00049 * 185.18031 * 9 8 7 12 12 C 1.46501 * 120.00377 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.47014 * 325.00381 * 12 11 9 14 14 C 1.50697 * 109.47318 * 205.00474 * 12 11 9 15 15 H 1.07996 * 120.00262 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99944 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00001 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 120.00036 * 359.97438 * 16 14 12 19 19 H 1.48498 * 109.47254 * 89.99939 * 18 16 14 20 20 H 1.48495 * 109.47159 * 210.00052 * 18 16 14 21 21 H 1.48500 * 109.47008 * 330.00154 * 18 16 14 22 22 C 1.53004 * 109.46761 * 85.00331 * 12 11 9 23 23 C 1.52997 * 109.47121 * 295.00468 * 22 12 11 24 24 C 1.38851 * 119.97516 * 0.24886 * 7 6 5 25 25 C 1.38086 * 119.98784 * 359.49493 * 24 7 6 26 26 H 1.08002 * 119.99678 * 359.97438 * 1 2 3 27 27 H 1.07993 * 119.99903 * 180.02562 * 1 2 3 28 28 H 1.08008 * 120.00127 * 180.02562 * 2 1 3 29 29 H 1.08006 * 119.99426 * 0.02562 * 5 4 3 30 30 H 1.07993 * 120.00840 * 179.97438 * 6 5 4 31 31 H 0.97003 * 119.99885 * 213.17571 * 8 7 6 32 32 H 0.97005 * 119.99856 * 0.02562 * 11 9 8 33 33 H 0.97003 * 119.99757 * 179.97438 * 17 16 14 34 34 H 1.08999 * 109.47020 * 55.00317 * 22 12 11 35 35 H 1.09000 * 109.46805 * 175.00090 * 22 12 11 36 36 H 1.08999 * 109.47051 * 299.99830 * 23 22 12 37 37 H 1.08999 * 109.47367 * 59.99599 * 23 22 12 38 38 H 1.08997 * 109.47111 * 180.02562 * 23 22 12 39 39 H 1.08000 * 120.00521 * 179.75057 * 24 7 6 40 40 H 1.08003 * 119.98909 * 180.25551 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3175 0.0000 0.0000 3 8 1.9958 1.1747 0.0000 4 6 3.3503 1.1296 0.1077 5 6 4.0064 -0.0929 0.0988 6 6 5.3821 -0.1392 0.2087 7 6 6.1087 1.0378 0.3286 8 7 7.5048 0.9913 0.4407 9 6 8.2000 0.0264 -0.1933 10 8 7.6275 -0.7462 -0.9375 11 7 9.5297 -0.0822 -0.0026 12 6 10.2854 -1.1314 -0.6913 13 1 9.6696 -2.0268 -0.7756 14 6 11.5314 -1.4507 0.0937 15 1 11.7399 -0.9245 1.0134 16 6 12.4059 -2.4140 -0.3628 17 7 13.4936 -2.6924 0.3220 18 14 12.0456 -3.3238 -1.9541 19 1 12.6516 -2.5882 -3.0929 20 1 12.6224 -4.6904 -1.8844 21 1 10.5765 -3.4159 -2.1499 22 6 10.6737 -0.6460 -2.0894 23 6 9.4101 -0.4407 -2.9272 24 6 5.4512 2.2606 0.3432 25 6 4.0759 2.3061 0.2279 26 1 -0.5400 0.9354 0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8576 -0.9354 -0.0004 29 1 3.4411 -1.0085 0.0059 30 1 5.8927 -1.0908 0.2022 31 1 7.9708 1.6536 0.9747 32 1 9.9864 0.5340 0.5914 33 1 14.1086 -3.3704 0.0010 34 1 11.2138 0.2974 -2.0094 35 1 11.3104 -1.3898 -2.5684 36 1 8.8700 -1.3840 -3.0072 37 1 8.7733 0.3031 -2.4482 38 1 9.6868 -0.0953 -3.9233 39 1 6.0156 3.1762 0.4405 40 1 3.5647 3.2575 0.2351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839155326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -0.287990 kcal Electronic energy + Delta-G solvation = -22565.277517 eV Core-core repulsion = 19153.994636 eV Total energy + Delta-G solvation = -3411.282881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83462 -39.96385 -37.96293 -35.61242 -34.20126 -32.52448 -32.12852 -31.38866 -31.04928 -28.58659 -27.26564 -23.74882 -23.29292 -22.53813 -21.03887 -20.69048 -19.85400 -18.96367 -18.37357 -17.40283 -16.41787 -16.01025 -15.55800 -15.52689 -14.98285 -14.75372 -14.40741 -14.03874 -13.66818 -13.56132 -13.34882 -13.23393 -12.75789 -12.55805 -12.31563 -12.01996 -11.98200 -11.81417 -11.12778 -10.99447 -10.90576 -10.65526 -10.27476 -9.94366 -9.72925 -9.44205 -9.26055 -9.18788 -9.06386 -8.79804 -8.17732 -7.59864 -6.24759 -4.27614 1.13760 1.29285 2.11398 2.91240 3.05720 3.21274 3.33475 3.38340 3.47351 3.88523 4.28308 4.40607 4.67547 4.80502 4.84494 5.09029 5.15887 5.25929 5.43259 5.57076 5.67882 5.89232 5.95711 6.01520 6.04566 6.10376 6.15091 6.29324 6.35473 6.44248 6.61822 6.68072 6.79403 6.90494 6.98951 7.09911 7.26023 7.44514 7.46472 7.48462 8.22581 8.55992 8.73937 9.03384 9.36018 10.87210 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.003249 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.850680 B = 8616.446604 C = 8909.341624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.021 3.979 3 O -0.256 6.256 4 C 0.084 3.916 5 C -0.177 4.177 6 C -0.082 4.082 7 C 0.157 3.843 8 N -0.694 5.694 9 C 0.694 3.306 10 O -0.579 6.579 11 N -0.711 5.711 12 C 0.259 3.741 13 H 0.050 0.950 14 C -0.536 4.536 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.891 5.891 18 Si 0.883 3.117 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.259 1.259 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.119 4.119 25 C -0.120 4.120 26 H 0.105 0.895 27 H 0.125 0.875 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.145 0.855 31 H 0.404 0.596 32 H 0.393 0.607 33 H 0.268 0.732 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.133 0.867 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 8.858 0.607 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.040 4.040 3 O -0.166 6.166 4 C 0.040 3.960 5 C -0.196 4.196 6 C -0.103 4.103 7 C 0.061 3.939 8 N -0.342 5.342 9 C 0.395 3.605 10 O -0.457 6.457 11 N -0.362 5.362 12 C 0.156 3.844 13 H 0.068 0.932 14 C -0.574 4.574 15 H 0.098 0.902 16 C -0.125 4.125 17 N -0.528 5.528 18 Si 0.713 3.287 19 H -0.202 1.202 20 H -0.222 1.222 21 H -0.184 1.184 22 C -0.179 4.179 23 C -0.199 4.199 24 C -0.140 4.140 25 C -0.139 4.139 26 H 0.123 0.877 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.239 0.761 32 H 0.226 0.774 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.151 0.849 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.917 8.149 -0.083 20.598 hybrid contribution 0.578 -0.079 -0.359 0.685 sum -18.339 8.070 -0.441 20.041 Atomic orbital electron populations 1.23506 0.93287 1.03296 1.08353 1.22608 0.93412 0.88139 0.99836 1.84323 1.17342 1.31134 1.83781 1.18928 0.80972 0.94601 1.01479 1.21101 0.95164 0.96845 1.06505 1.21097 0.92405 0.98915 0.97871 1.17493 0.82333 0.93450 1.00650 1.42807 1.04620 1.33174 1.53625 1.16066 0.82625 0.81269 0.80552 1.90901 1.69253 1.44788 1.40716 1.45454 1.04943 1.36366 1.49400 1.19076 0.91386 0.85661 0.88308 0.93200 1.21029 1.04276 1.22519 1.09577 0.90187 1.24820 0.94459 0.96060 0.97133 1.69865 1.11536 1.32446 1.38965 0.86901 0.79745 0.78473 0.83604 1.20213 1.22154 1.18405 1.22314 0.96701 1.01109 0.97749 1.21850 0.98285 1.01914 0.97874 1.20658 0.93544 0.96453 1.03371 1.20105 0.92739 0.96428 1.04627 0.87708 0.85669 0.85276 0.85066 0.83709 0.76077 0.77420 0.92230 0.92333 0.92740 0.92876 0.92936 0.95100 0.84877 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -2.03 14.63 28.85 0.42 -1.60 16 2 C 0.02 0.20 10.00 28.85 0.29 0.49 16 3 O -0.26 -3.04 10.01 -2.98 -0.03 -3.07 16 4 C 0.08 1.03 6.66 -39.20 -0.26 0.77 16 5 C -0.18 -2.23 9.19 -39.45 -0.36 -2.59 16 6 C -0.08 -1.20 8.65 -39.41 -0.34 -1.54 16 7 C 0.16 2.13 6.29 -83.61 -0.53 1.61 16 8 N -0.69 -9.51 5.36 -14.19 -0.08 -9.59 16 9 C 0.69 12.48 6.87 -86.92 -0.60 11.88 16 10 O -0.58 -12.16 11.15 5.29 0.06 -12.11 16 11 N -0.71 -13.34 5.03 -59.81 -0.30 -13.64 16 12 C 0.26 5.95 1.83 -69.08 -0.13 5.82 16 13 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 14 C -0.54 -14.08 9.31 -34.44 -0.32 -14.40 16 15 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 16 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 17 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 18 Si 0.88 21.40 24.41 -169.99 -4.15 17.25 16 19 H -0.28 -6.48 6.83 56.52 0.39 -6.10 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 22 C -0.14 -3.05 5.11 -26.73 -0.14 -3.18 16 23 C -0.14 -2.85 8.51 37.16 0.32 -2.53 16 24 C -0.12 -1.32 9.96 -39.41 -0.39 -1.71 16 25 C -0.12 -1.33 9.98 -39.45 -0.39 -1.72 16 26 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 28 H 0.13 1.06 5.57 -52.48 -0.29 0.77 16 29 H 0.13 1.37 5.71 -52.48 -0.30 1.07 16 30 H 0.15 2.39 6.40 -52.49 -0.34 2.05 16 31 H 0.40 4.17 8.83 -40.82 -0.36 3.81 16 32 H 0.39 6.40 8.56 -40.82 -0.35 6.05 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.25 3.21 -51.93 -0.17 1.09 16 36 H 0.05 1.13 7.84 -51.93 -0.41 0.72 16 37 H 0.05 1.04 5.64 -51.93 -0.29 0.75 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -31.27 326.02 -6.33 -37.60 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.99 Total: 10.49 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.53 Total: -6.63 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.40 Total: -48.45 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.03 Total: -15.18 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.15 Total: 17.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.27 -6.33 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839155326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.310 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds