Wall clock time and date at job start Tue Mar 31 2020 06:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31754 * 1 3 3 O 1.35641 * 120.00091 * 2 1 4 4 C 1.35952 * 117.99803 * 174.85284 * 3 2 1 5 5 C 1.38747 * 119.99276 * 5.47493 * 4 3 2 6 6 C 1.38082 * 120.01434 * 180.02562 * 5 4 3 7 7 C 1.38844 * 119.98854 * 0.02562 * 6 5 4 8 8 N 1.40131 * 120.01417 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99809 * 33.17008 * 8 7 6 10 10 O 1.21592 * 120.00177 * 5.18376 * 9 8 7 11 11 N 1.34771 * 120.00049 * 185.18031 * 9 8 7 12 12 C 1.46501 * 120.00377 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.47014 * 325.00381 * 12 11 9 14 14 C 1.50697 * 109.47318 * 205.00474 * 12 11 9 15 15 H 1.07996 * 120.00262 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99944 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00001 * 179.97438 * 16 14 12 18 18 Si 1.86799 * 120.00036 * 359.97438 * 16 14 12 19 19 H 1.48498 * 109.47254 * 89.99939 * 18 16 14 20 20 H 1.48495 * 109.47159 * 210.00052 * 18 16 14 21 21 H 1.48500 * 109.47008 * 330.00154 * 18 16 14 22 22 C 1.53004 * 109.46761 * 85.00331 * 12 11 9 23 23 C 1.52997 * 109.47121 * 295.00468 * 22 12 11 24 24 C 1.38851 * 119.97516 * 0.24886 * 7 6 5 25 25 C 1.38086 * 119.98784 * 359.49493 * 24 7 6 26 26 H 1.08002 * 119.99678 * 359.97438 * 1 2 3 27 27 H 1.07993 * 119.99903 * 180.02562 * 1 2 3 28 28 H 1.08008 * 120.00127 * 180.02562 * 2 1 3 29 29 H 1.08006 * 119.99426 * 0.02562 * 5 4 3 30 30 H 1.07993 * 120.00840 * 179.97438 * 6 5 4 31 31 H 0.97003 * 119.99885 * 213.17571 * 8 7 6 32 32 H 0.97005 * 119.99856 * 0.02562 * 11 9 8 33 33 H 0.97003 * 119.99757 * 179.97438 * 17 16 14 34 34 H 1.08999 * 109.47020 * 55.00317 * 22 12 11 35 35 H 1.09000 * 109.46805 * 175.00090 * 22 12 11 36 36 H 1.08999 * 109.47051 * 299.99830 * 23 22 12 37 37 H 1.08999 * 109.47367 * 59.99599 * 23 22 12 38 38 H 1.08997 * 109.47111 * 180.02562 * 23 22 12 39 39 H 1.08000 * 120.00521 * 179.75057 * 24 7 6 40 40 H 1.08003 * 119.98909 * 180.25551 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3175 0.0000 0.0000 3 8 1.9958 1.1747 0.0000 4 6 3.3503 1.1296 0.1077 5 6 4.0064 -0.0929 0.0988 6 6 5.3821 -0.1392 0.2087 7 6 6.1087 1.0378 0.3286 8 7 7.5048 0.9913 0.4407 9 6 8.2000 0.0264 -0.1933 10 8 7.6275 -0.7462 -0.9375 11 7 9.5297 -0.0822 -0.0026 12 6 10.2854 -1.1314 -0.6913 13 1 9.6696 -2.0268 -0.7756 14 6 11.5314 -1.4507 0.0937 15 1 11.7399 -0.9245 1.0134 16 6 12.4059 -2.4140 -0.3628 17 7 13.4936 -2.6924 0.3220 18 14 12.0456 -3.3238 -1.9541 19 1 12.6516 -2.5882 -3.0929 20 1 12.6224 -4.6904 -1.8844 21 1 10.5765 -3.4159 -2.1499 22 6 10.6737 -0.6460 -2.0894 23 6 9.4101 -0.4407 -2.9272 24 6 5.4512 2.2606 0.3432 25 6 4.0759 2.3061 0.2279 26 1 -0.5400 0.9354 0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8576 -0.9354 -0.0004 29 1 3.4411 -1.0085 0.0059 30 1 5.8927 -1.0908 0.2022 31 1 7.9708 1.6536 0.9747 32 1 9.9864 0.5340 0.5914 33 1 14.1086 -3.3704 0.0010 34 1 11.2138 0.2974 -2.0094 35 1 11.3104 -1.3898 -2.5684 36 1 8.8700 -1.3840 -3.0072 37 1 8.7733 0.3031 -2.4482 38 1 9.6868 -0.0953 -3.9233 39 1 6.0156 3.1762 0.4405 40 1 3.5647 3.2575 0.2351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839155326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:37 Heat of formation + Delta-G solvation = -21.841237 kcal Electronic energy + Delta-G solvation = -22566.212136 eV Core-core repulsion = 19153.994636 eV Total energy + Delta-G solvation = -3412.217500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86590 -41.14432 -39.07158 -37.19818 -35.47397 -34.40071 -33.28233 -32.71445 -31.96774 -29.88736 -28.86825 -24.82444 -24.64819 -23.99094 -22.42081 -21.59364 -21.40571 -19.95838 -19.73537 -18.61105 -18.18236 -17.34137 -16.96401 -16.40730 -16.29604 -16.05862 -15.67721 -15.19540 -15.05618 -14.94642 -14.52910 -14.39500 -14.13732 -13.81806 -13.71113 -13.48040 -13.38589 -12.95629 -12.82407 -12.74537 -12.41253 -11.86066 -11.84583 -11.48926 -11.24244 -11.23057 -11.01436 -10.85325 -10.07734 -10.02054 -9.76914 -8.59799 -8.37810 -6.43144 0.20233 0.34253 1.27967 1.36248 1.37613 1.45890 1.74198 2.14868 2.18826 2.26476 2.82791 2.98502 3.36721 3.66695 3.84482 4.04517 4.25180 4.26956 4.33228 4.40169 4.43936 4.53540 4.77826 4.84652 4.95356 5.01038 5.01588 5.11897 5.20432 5.21914 5.29001 5.34125 5.41278 5.44641 5.52543 5.55189 5.66051 5.93136 6.01216 6.30620 6.59886 6.63705 7.14907 7.24787 7.64608 8.77286 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.003249 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.850680 B = 8616.446604 C = 8909.341624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 O -0.266 6.266 4 C 0.082 3.918 5 C -0.183 4.183 6 C -0.104 4.104 7 C 0.133 3.867 8 N -0.676 5.676 9 C 0.696 3.304 10 O -0.610 6.610 11 N -0.710 5.710 12 C 0.269 3.731 13 H 0.023 0.977 14 C -0.532 4.532 15 H 0.058 0.942 16 C 0.031 3.969 17 N -0.934 5.934 18 Si 0.935 3.065 19 H -0.260 1.260 20 H -0.295 1.295 21 H -0.260 1.260 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.103 4.103 25 C -0.120 4.120 26 H 0.105 0.895 27 H 0.149 0.851 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.117 0.883 31 H 0.422 0.578 32 H 0.405 0.595 33 H 0.270 0.730 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.166 0.834 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.496 10.603 -0.184 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.071 4.071 3 O -0.176 6.176 4 C 0.038 3.962 5 C -0.202 4.202 6 C -0.125 4.125 7 C 0.038 3.962 8 N -0.325 5.325 9 C 0.396 3.604 10 O -0.490 6.490 11 N -0.363 5.363 12 C 0.163 3.837 13 H 0.041 0.959 14 C -0.570 4.570 15 H 0.076 0.924 16 C -0.169 4.169 17 N -0.572 5.572 18 Si 0.763 3.237 19 H -0.186 1.186 20 H -0.222 1.222 21 H -0.184 1.184 22 C -0.176 4.176 23 C -0.188 4.188 24 C -0.123 4.123 25 C -0.138 4.138 26 H 0.124 0.876 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.134 0.866 31 H 0.260 0.740 32 H 0.240 0.760 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.184 0.816 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -20.839 9.948 -0.845 23.108 hybrid contribution 0.962 -0.566 -0.018 1.116 sum -19.877 9.382 -0.862 21.997 Atomic orbital electron populations 1.23838 0.92799 1.04464 1.05449 1.22924 0.94050 0.88074 1.02029 1.84314 1.16988 1.32259 1.84084 1.19139 0.81461 0.94810 1.00795 1.21193 0.94515 0.97966 1.06517 1.20978 0.93365 0.98319 0.99816 1.17698 0.81894 0.94257 1.02400 1.42477 1.04776 1.32330 1.52954 1.16090 0.82131 0.81650 0.80484 1.90887 1.69731 1.46196 1.42199 1.45123 1.05426 1.35940 1.49796 1.18662 0.89711 0.86138 0.89148 0.95879 1.21268 1.05137 1.21647 1.08942 0.92409 1.25516 0.94387 0.97051 0.99973 1.69972 1.12802 1.33665 1.40810 0.86056 0.79487 0.77420 0.80785 1.18562 1.22200 1.18439 1.22228 0.97446 1.01145 0.96812 1.21716 0.97043 1.01108 0.98884 1.20945 0.93661 0.96480 1.01233 1.20487 0.92797 0.97148 1.03414 0.87646 0.83350 0.84305 0.83857 0.86551 0.74001 0.75998 0.92081 0.91219 0.93820 0.94576 0.92915 0.92582 0.81606 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.23 14.63 67.09 0.98 -2.25 16 2 C -0.01 -0.20 10.00 67.09 0.67 0.48 16 3 O -0.27 -5.89 10.01 -33.58 -0.34 -6.22 16 4 C 0.08 1.88 6.66 22.51 0.15 2.03 16 5 C -0.18 -4.53 9.19 22.35 0.21 -4.32 16 6 C -0.10 -3.05 8.65 22.38 0.19 -2.85 16 7 C 0.13 3.45 6.29 38.11 0.24 3.69 16 8 N -0.68 -17.70 5.36 -317.06 -1.70 -19.40 16 9 C 0.70 24.78 6.87 179.06 1.23 26.01 16 10 O -0.61 -25.92 11.15 -4.00 -0.04 -25.97 16 11 N -0.71 -26.48 5.03 -461.42 -2.32 -28.80 16 12 C 0.27 12.35 1.83 44.25 0.08 12.43 16 13 H 0.02 1.20 6.63 -2.39 -0.02 1.19 16 14 C -0.53 -28.35 9.31 25.60 0.24 -28.11 16 15 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 16 C 0.03 1.70 5.45 84.65 0.46 2.16 16 17 N -0.93 -55.42 13.96 21.45 0.30 -55.12 16 18 Si 0.94 44.33 24.41 68.60 1.67 46.00 16 19 H -0.26 -11.60 6.83 99.48 0.68 -10.92 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 21 H -0.26 -12.24 6.53 99.48 0.65 -11.59 16 22 C -0.14 -5.83 5.11 30.59 0.16 -5.67 16 23 C -0.13 -5.02 8.51 71.98 0.61 -4.41 16 24 C -0.10 -1.98 9.96 22.38 0.22 -1.76 16 25 C -0.12 -2.32 9.98 22.36 0.22 -2.10 16 26 H 0.11 1.48 8.06 -2.91 -0.02 1.46 16 27 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.14 2.13 5.57 -2.91 -0.02 2.11 16 29 H 0.14 2.99 5.71 -2.91 -0.02 2.98 16 30 H 0.12 4.05 6.40 -2.91 -0.02 4.03 16 31 H 0.42 7.84 8.83 -92.71 -0.82 7.02 16 32 H 0.40 12.95 8.56 -92.70 -0.79 12.16 16 33 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.04 1.94 3.21 -2.39 -0.01 1.94 16 36 H 0.04 1.49 7.84 -2.39 -0.02 1.48 16 37 H 0.05 2.02 5.64 -2.39 -0.01 2.00 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -68.37 326.02 2.63 -65.74 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.61 Total: 28.43 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 5.67 Total: -4.66 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -3.72 Total: -103.32 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.38 Total: -32.19 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.67 Total: 46.00 kcal Total: -68.37 2.63 -65.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839155326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.899 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds