Wall clock time and date at job start Tue Mar 31 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47245 * 2 1 4 4 N 1.46902 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.48233 * 111.00156 * 289.91451 * 4 3 2 6 6 C 1.51315 * 104.76758 * 267.40228 * 5 4 3 7 7 O 1.21275 * 125.75107 * 163.21077 * 6 5 4 8 8 N 1.34851 * 108.49795 * 343.24060 * 6 5 4 9 9 C 1.46801 * 109.59046 * 359.56903 * 8 6 5 10 10 H 1.09008 * 110.12008 * 258.36980 * 9 8 6 11 11 C 1.50701 * 110.11930 * 136.77440 * 9 8 6 12 12 C 1.38297 * 119.92705 * 321.10484 * 11 9 8 13 13 C 1.38104 * 120.06867 * 180.02562 * 12 11 9 14 14 C 1.38875 * 119.92984 * 359.97438 * 13 12 11 15 15 O 1.35753 * 120.06937 * 180.02562 * 14 13 12 16 16 C 1.34820 * 116.99816 * 353.97862 * 15 14 13 17 17 H 1.07993 * 120.00415 * 2.39003 * 16 15 14 18 18 C 1.38665 * 120.00018 * 182.38909 * 16 15 14 19 19 N 1.31546 * 120.00054 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99627 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.46935 * 90.00373 * 20 18 16 22 22 H 1.48502 * 109.46738 * 209.99985 * 20 18 16 23 23 H 1.48492 * 109.47160 * 329.99871 * 20 18 16 24 24 C 1.38884 * 119.86088 * 0.28050 * 14 13 12 25 25 C 1.38103 * 119.93031 * 359.42041 * 24 14 13 26 26 H 1.08998 * 109.47312 * 60.00138 * 1 2 3 27 27 H 1.09001 * 109.47453 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47054 * 299.99794 * 1 2 3 29 29 H 1.09002 * 109.47054 * 240.00206 * 2 1 3 30 30 H 1.08998 * 109.47109 * 120.00376 * 2 1 3 31 31 H 1.09002 * 109.46926 * 60.00128 * 3 2 1 32 32 H 1.08998 * 109.47374 * 300.00214 * 3 2 1 33 33 H 1.08995 * 110.38392 * 148.57853 * 5 4 3 34 34 H 1.09000 * 110.37963 * 26.21942 * 5 4 3 35 35 H 0.97004 * 125.20310 * 179.61069 * 8 6 5 36 36 H 1.08004 * 119.97027 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.03624 * 180.02562 * 13 12 11 38 38 H 0.97004 * 120.00091 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.03476 * 179.72508 * 24 14 13 40 40 H 1.07999 * 119.96635 * 180.32204 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0397 0.9712 1.3020 6 6 4.2395 2.2310 2.1160 7 8 4.3840 2.2819 3.3190 8 7 4.2292 3.2878 1.2783 9 6 4.0396 2.8210 -0.1006 10 1 4.9924 2.8190 -0.6301 11 6 3.0514 3.7057 -0.8160 12 6 1.9403 4.1826 -0.1449 13 6 1.0325 4.9931 -0.7978 14 6 1.2367 5.3294 -2.1297 15 8 0.3464 6.1263 -2.7742 16 6 -0.7767 6.4555 -2.1049 17 1 -0.9176 6.1196 -1.0883 18 6 -1.7509 7.2255 -2.7219 19 7 -2.8465 7.5472 -2.0688 20 14 -1.5075 7.8060 -4.4808 21 1 -2.0647 6.7967 -5.4167 22 1 -2.2071 9.1013 -4.6757 23 1 -0.0574 7.9815 -4.7479 24 6 2.3507 4.8445 -2.8024 25 6 3.2581 4.0395 -2.1421 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9562 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 4.9897 0.4561 1.1605 34 1 3.3198 0.3143 1.7901 35 1 4.3320 4.2145 1.5459 36 1 1.7822 3.9211 0.8910 37 1 0.1652 5.3656 -0.2731 38 1 -3.5279 8.0861 -2.5003 39 1 2.5099 5.1006 -3.8394 40 1 4.1273 3.6663 -2.6632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840821299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:44 Heat of formation + Delta-G solvation = -16.823857 kcal Electronic energy + Delta-G solvation = -23231.027902 eV Core-core repulsion = 19819.027971 eV Total energy + Delta-G solvation = -3411.999930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19702 -39.24203 -37.74530 -36.36210 -34.73899 -32.55847 -31.90348 -30.58713 -30.41910 -27.44518 -26.24998 -25.21026 -22.96395 -22.21046 -21.49038 -20.62293 -20.20967 -18.07728 -17.59933 -17.32021 -16.58285 -15.65722 -15.34026 -15.12030 -14.78867 -14.49353 -14.21389 -14.19992 -13.95526 -13.61140 -13.37181 -13.14489 -12.85589 -12.59068 -12.36691 -12.28337 -11.89633 -11.78025 -11.34301 -11.31725 -11.06798 -10.91946 -10.84575 -10.58861 -10.38334 -10.23118 -9.57225 -9.29592 -9.00423 -8.85181 -8.44292 -7.53764 -6.55075 -4.22028 1.86722 1.94431 2.42348 3.13281 3.17214 3.20250 3.30741 3.65861 4.12114 4.24776 4.43418 4.62957 4.71639 4.79789 4.96032 5.00966 5.13946 5.23455 5.30135 5.33534 5.38810 5.50727 5.63021 5.66699 5.80906 5.94154 5.98549 6.06700 6.12996 6.18323 6.31468 6.35055 6.53547 6.57402 6.77434 6.84097 7.01528 7.03648 7.10098 7.40443 7.63718 7.88002 8.09988 8.78975 9.38629 10.51887 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.004123 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.225886 B = 6789.806904 C = 7156.863570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.034 3.966 4 N -0.490 5.490 5 C -0.003 4.003 6 C 0.494 3.506 7 O -0.534 6.534 8 N -0.740 5.740 9 C 0.335 3.665 10 H 0.105 0.895 11 C -0.212 4.212 12 C -0.051 4.051 13 C -0.223 4.223 14 C 0.169 3.831 15 O -0.210 6.210 16 C -0.393 4.393 17 H 0.108 0.892 18 C 0.066 3.934 19 N -0.873 5.873 20 Si 0.906 3.094 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.195 4.195 25 C -0.047 4.047 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.417 0.583 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.281 0.719 39 H 0.120 0.880 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.097 -11.756 1.375 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.093 4.093 4 N -0.215 5.215 5 C -0.134 4.134 6 C 0.279 3.721 7 O -0.410 6.410 8 N -0.399 5.399 9 C 0.143 3.857 10 H 0.123 0.877 11 C -0.214 4.214 12 C -0.070 4.070 13 C -0.242 4.242 14 C 0.115 3.885 15 O -0.114 6.114 16 C -0.468 4.468 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.510 5.510 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.214 4.214 25 C -0.067 4.067 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.257 0.743 36 H 0.124 0.876 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.081 -11.954 1.286 16.351 hybrid contribution -0.467 1.326 0.179 1.418 sum 10.614 -10.628 1.465 15.091 Atomic orbital electron populations 1.21729 0.95269 1.01613 1.02417 1.21531 0.95854 0.96027 1.02251 1.22708 0.86223 0.97481 1.02932 1.65825 1.10215 1.16729 1.28705 1.23264 1.04032 0.96276 0.89849 1.21572 0.75411 0.88007 0.87143 1.90752 1.50185 1.86994 1.13072 1.47056 1.73664 1.09860 1.09335 1.21301 0.97290 0.85692 0.81457 0.87713 1.19237 0.99162 1.07277 0.95725 1.20615 0.92875 0.95197 0.98317 1.21236 1.02799 1.04850 0.95303 1.19173 0.89524 0.88965 0.90794 1.83567 1.28342 1.57192 1.42311 1.20784 0.92452 1.33830 0.99711 0.87512 1.24487 0.93877 0.95616 0.99896 1.69637 1.07401 1.36021 1.37942 0.86174 0.79658 0.78275 0.82785 1.19720 1.20654 1.18299 1.20192 0.96094 1.04753 1.00373 1.20409 0.97660 0.95612 0.92986 0.92144 0.92619 0.92807 0.91020 0.92442 0.94125 0.88197 0.86340 0.87482 0.74299 0.87588 0.84852 0.90829 0.86196 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.22 5.97 -26.74 -0.16 -1.38 16 3 C 0.03 0.41 3.34 -3.83 -0.01 0.40 16 4 N -0.49 -5.44 5.54 -230.58 -1.28 -6.72 16 5 C 0.00 -0.03 6.49 -3.94 -0.03 -0.06 16 6 C 0.49 6.52 8.47 -10.65 -0.09 6.43 16 7 O -0.53 -9.04 18.03 5.56 0.10 -8.94 16 8 N -0.74 -8.82 5.24 -56.86 -0.30 -9.11 16 9 C 0.33 3.86 3.99 -126.74 -0.51 3.35 16 10 H 0.11 1.06 8.03 -51.92 -0.42 0.64 16 11 C -0.21 -2.95 3.74 -104.58 -0.39 -3.34 16 12 C -0.05 -0.82 7.04 -39.61 -0.28 -1.10 16 13 C -0.22 -4.36 9.16 -39.39 -0.36 -4.72 16 14 C 0.17 3.55 6.65 -39.11 -0.26 3.29 16 15 O -0.21 -5.20 8.59 0.07 0.00 -5.20 16 16 C -0.39 -10.51 9.95 30.89 0.31 -10.20 16 17 H 0.11 2.93 5.44 -52.49 -0.29 2.64 16 18 C 0.07 1.76 5.49 -17.52 -0.10 1.67 16 19 N -0.87 -24.32 13.96 55.48 0.77 -23.55 16 20 Si 0.91 20.72 28.62 -169.99 -4.86 15.86 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.19 -3.41 9.99 -39.39 -0.39 -3.80 16 25 C -0.05 -0.68 9.67 -39.61 -0.38 -1.06 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 31 H 0.04 0.54 6.54 -51.93 -0.34 0.20 16 32 H 0.10 1.41 6.05 -51.93 -0.31 1.10 16 33 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.11 1.04 6.22 -51.93 -0.32 0.72 16 35 H 0.42 4.78 8.96 -40.82 -0.37 4.42 16 36 H 0.11 1.63 6.67 -52.48 -0.35 1.28 16 37 H 0.13 2.83 5.66 -52.49 -0.30 2.54 16 38 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.12 1.35 8.04 -52.49 -0.42 0.93 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -29.03 326.39 -8.05 -37.08 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.13 Total: 7.41 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.28 Total: -11.75 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.80 Total: -39.38 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.10 Total: -14.14 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.86 Total: 15.86 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.03 -8.05 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840821299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.259 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds