Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47245 * 2 1 4 4 N 1.46902 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.48233 * 111.00156 * 289.91451 * 4 3 2 6 6 C 1.51315 * 104.76758 * 267.40228 * 5 4 3 7 7 O 1.21275 * 125.75107 * 163.21077 * 6 5 4 8 8 N 1.34851 * 108.49795 * 343.24060 * 6 5 4 9 9 C 1.46801 * 109.59046 * 359.56903 * 8 6 5 10 10 H 1.09008 * 110.12008 * 258.36980 * 9 8 6 11 11 C 1.50701 * 110.11930 * 136.77440 * 9 8 6 12 12 C 1.38297 * 119.92705 * 321.10484 * 11 9 8 13 13 C 1.38104 * 120.06867 * 180.02562 * 12 11 9 14 14 C 1.38875 * 119.92984 * 359.97438 * 13 12 11 15 15 O 1.35753 * 120.06937 * 180.02562 * 14 13 12 16 16 C 1.34820 * 116.99816 * 353.97862 * 15 14 13 17 17 H 1.07993 * 120.00415 * 2.39003 * 16 15 14 18 18 C 1.38665 * 120.00018 * 182.38909 * 16 15 14 19 19 N 1.31546 * 120.00054 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99627 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.46935 * 90.00373 * 20 18 16 22 22 H 1.48502 * 109.46738 * 209.99985 * 20 18 16 23 23 H 1.48492 * 109.47160 * 329.99871 * 20 18 16 24 24 C 1.38884 * 119.86088 * 0.28050 * 14 13 12 25 25 C 1.38103 * 119.93031 * 359.42041 * 24 14 13 26 26 H 1.08998 * 109.47312 * 60.00138 * 1 2 3 27 27 H 1.09001 * 109.47453 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47054 * 299.99794 * 1 2 3 29 29 H 1.09002 * 109.47054 * 240.00206 * 2 1 3 30 30 H 1.08998 * 109.47109 * 120.00376 * 2 1 3 31 31 H 1.09002 * 109.46926 * 60.00128 * 3 2 1 32 32 H 1.08998 * 109.47374 * 300.00214 * 3 2 1 33 33 H 1.08995 * 110.38392 * 148.57853 * 5 4 3 34 34 H 1.09000 * 110.37963 * 26.21942 * 5 4 3 35 35 H 0.97004 * 125.20310 * 179.61069 * 8 6 5 36 36 H 1.08004 * 119.97027 * 0.02562 * 12 11 9 37 37 H 1.07995 * 120.03624 * 180.02562 * 13 12 11 38 38 H 0.97004 * 120.00091 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.03476 * 179.72508 * 24 14 13 40 40 H 1.07999 * 119.96635 * 180.32204 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0397 0.9712 1.3020 6 6 4.2395 2.2310 2.1160 7 8 4.3840 2.2819 3.3190 8 7 4.2292 3.2878 1.2783 9 6 4.0396 2.8210 -0.1006 10 1 4.9924 2.8190 -0.6301 11 6 3.0514 3.7057 -0.8160 12 6 1.9403 4.1826 -0.1449 13 6 1.0325 4.9931 -0.7978 14 6 1.2367 5.3294 -2.1297 15 8 0.3464 6.1263 -2.7742 16 6 -0.7767 6.4555 -2.1049 17 1 -0.9176 6.1196 -1.0883 18 6 -1.7509 7.2255 -2.7219 19 7 -2.8465 7.5472 -2.0688 20 14 -1.5075 7.8060 -4.4808 21 1 -2.0647 6.7967 -5.4167 22 1 -2.2071 9.1013 -4.6757 23 1 -0.0574 7.9815 -4.7479 24 6 2.3507 4.8445 -2.8024 25 6 3.2581 4.0395 -2.1421 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9562 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 4.9897 0.4561 1.1605 34 1 3.3198 0.3143 1.7901 35 1 4.3320 4.2145 1.5459 36 1 1.7822 3.9211 0.8910 37 1 0.1652 5.3656 -0.2731 38 1 -3.5279 8.0861 -2.5003 39 1 2.5099 5.1006 -3.8394 40 1 4.1273 3.6663 -2.6632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840821299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = -37.981988 kcal Electronic energy + Delta-G solvation = -23231.945387 eV Core-core repulsion = 19819.027971 eV Total energy + Delta-G solvation = -3412.917416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.27137 -40.76946 -39.03822 -37.73102 -35.71178 -34.49960 -32.83165 -31.96885 -31.80606 -28.60081 -27.49040 -26.81006 -24.08828 -23.62137 -22.59006 -21.76031 -21.30647 -19.85825 -19.16797 -18.51265 -17.63271 -16.76562 -16.67480 -16.39176 -16.03678 -15.79837 -15.64646 -15.48225 -15.44507 -14.91094 -14.60869 -14.44008 -14.10601 -14.02243 -13.81289 -13.49596 -13.16511 -12.81820 -12.68266 -12.55354 -12.50408 -12.28794 -11.99746 -11.95054 -11.57395 -11.43509 -11.29986 -10.93249 -10.35452 -9.90360 -9.80962 -9.07647 -8.52742 -6.25931 0.45423 0.52478 1.31757 1.35282 1.39495 1.51428 2.20920 2.26129 2.55132 2.84974 3.03672 3.13028 3.41503 3.55574 3.86550 3.95425 4.05200 4.12294 4.26416 4.42539 4.45039 4.51916 4.53857 4.63635 4.71315 4.76070 4.87653 4.91577 5.10671 5.16044 5.20395 5.28850 5.31059 5.39012 5.48078 5.54899 5.65752 5.75254 5.84828 5.88077 6.01301 6.15545 6.81177 7.07273 7.53533 8.58665 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020840 B = 0.004123 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.225886 B = 6789.806904 C = 7156.863570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C 0.036 3.964 4 N -0.478 5.478 5 C 0.005 3.995 6 C 0.490 3.510 7 O -0.576 6.576 8 N -0.738 5.738 9 C 0.336 3.664 10 H 0.142 0.858 11 C -0.179 4.179 12 C -0.047 4.047 13 C -0.238 4.238 14 C 0.132 3.868 15 O -0.240 6.240 16 C -0.400 4.400 17 H 0.079 0.921 18 C 0.011 3.989 19 N -0.923 5.923 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.260 1.260 24 C -0.190 4.190 25 C -0.033 4.033 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.116 0.884 35 H 0.418 0.582 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.285 0.715 39 H 0.135 0.865 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.553 -14.131 0.157 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.092 4.092 4 N -0.203 5.203 5 C -0.126 4.126 6 C 0.277 3.723 7 O -0.455 6.455 8 N -0.395 5.395 9 C 0.144 3.856 10 H 0.159 0.841 11 C -0.181 4.181 12 C -0.066 4.066 13 C -0.258 4.258 14 C 0.082 3.918 15 O -0.147 6.147 16 C -0.476 4.476 17 H 0.096 0.904 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.184 1.184 24 C -0.209 4.209 25 C -0.052 4.052 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.134 0.866 35 H 0.258 0.742 36 H 0.129 0.871 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.153 0.847 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 14.581 -14.358 0.065 20.463 hybrid contribution -1.262 1.811 0.744 2.330 sum 13.318 -12.547 0.808 18.315 Atomic orbital electron populations 1.21742 0.95831 1.02358 1.01234 1.21488 0.95304 0.94774 1.03414 1.22640 0.87029 0.98531 1.01044 1.65936 1.09249 1.15916 1.29168 1.23402 1.05721 0.94959 0.88474 1.22050 0.74443 0.89118 0.86721 1.90739 1.52171 1.87627 1.14966 1.47113 1.72935 1.10033 1.09443 1.21575 0.97722 0.85197 0.81129 0.84098 1.19629 0.97849 1.04907 0.95753 1.20650 0.92936 0.94452 0.98582 1.21148 1.02946 1.06276 0.95395 1.19746 0.90474 0.89976 0.91609 1.83514 1.28542 1.60021 1.42626 1.20668 0.93893 1.34086 0.98953 0.90352 1.25301 0.93564 0.95947 1.03991 1.69729 1.08627 1.38124 1.39820 0.85203 0.79375 0.78235 0.77843 1.18916 1.19471 1.18370 1.20557 0.94916 1.04183 1.01205 1.20914 0.97978 0.93531 0.92763 0.93688 0.90932 0.93687 0.90128 0.90861 0.95726 0.90394 0.83240 0.86569 0.74176 0.87097 0.88027 0.90532 0.84696 0.81409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.11 -1.99 5.97 30.59 0.18 -1.81 16 3 C 0.04 0.77 3.34 86.30 0.29 1.06 16 4 N -0.48 -8.51 5.54 -883.41 -4.89 -13.40 16 5 C 0.00 0.08 6.49 85.50 0.55 0.64 16 6 C 0.49 11.56 8.47 87.84 0.74 12.30 16 7 O -0.58 -18.61 18.03 -3.02 -0.05 -18.67 16 8 N -0.74 -15.22 5.24 -452.15 -2.37 -17.59 16 9 C 0.34 6.17 3.99 128.11 0.51 6.68 16 10 H 0.14 1.84 8.03 -2.38 -0.02 1.82 16 11 C -0.18 -4.42 3.74 -19.84 -0.07 -4.49 16 12 C -0.05 -1.49 7.04 22.25 0.16 -1.34 16 13 C -0.24 -9.81 9.16 22.39 0.21 -9.60 16 14 C 0.13 5.67 6.65 22.58 0.15 5.82 16 15 O -0.24 -12.39 8.59 -22.67 -0.19 -12.59 16 16 C -0.40 -22.89 9.95 67.92 0.68 -22.21 16 17 H 0.08 4.75 5.44 -2.91 -0.02 4.74 16 18 C 0.01 0.60 5.49 84.84 0.47 1.07 16 19 N -0.92 -54.35 13.96 21.62 0.30 -54.05 16 20 Si 0.97 44.05 28.62 68.60 1.96 46.02 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 24 C -0.19 -6.24 9.99 22.39 0.22 -6.01 16 25 C -0.03 -0.81 9.67 22.25 0.22 -0.59 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.10 6.56 -2.39 -0.02 1.09 16 31 H 0.02 0.62 6.54 -2.39 -0.02 0.60 16 32 H 0.08 2.05 6.05 -2.39 -0.01 2.04 16 33 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 1.78 6.22 -2.39 -0.01 1.77 16 35 H 0.42 8.55 8.96 -92.71 -0.83 7.72 16 36 H 0.11 3.40 6.67 -2.91 -0.02 3.38 16 37 H 0.10 4.80 5.66 -2.91 -0.02 4.79 16 38 H 0.29 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 40 H 0.17 2.60 8.04 -2.91 -0.02 2.58 16 Total: -1.00 -68.43 326.39 0.01 -68.42 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.24 Total: 22.67 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 5.01 Total: -20.81 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -6.96 Total: -85.03 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.25 Total: -31.25 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.96 Total: 46.02 kcal Total: -68.43 0.01 -68.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840821299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.433 kcal (2) G-P(sol) polarization free energy of solvation -68.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds