Wall clock time and date at job start Tue Mar 31 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47023 * 2 1 4 4 N 1.46890 * 109.47334 * 179.97438 * 3 2 1 5 5 C 1.48241 * 111.00042 * 304.11133 * 4 3 2 6 6 C 1.51307 * 104.76765 * 214.70931 * 5 4 3 7 7 O 1.21285 * 125.75220 * 196.76359 * 6 5 4 8 8 N 1.34963 * 108.51857 * 16.81371 * 6 5 4 9 9 C 1.46809 * 109.52612 * 0.34298 * 8 6 5 10 10 H 1.09000 * 110.11311 * 101.68616 * 9 8 6 11 11 C 1.50694 * 110.11596 * 223.27695 * 9 8 6 12 12 C 1.38303 * 119.92937 * 147.42199 * 11 9 8 13 13 C 1.38104 * 120.06915 * 179.72402 * 12 11 9 14 14 C 1.38882 * 119.92448 * 0.57210 * 13 12 11 15 15 O 1.35752 * 120.06545 * 179.68107 * 14 13 12 16 16 C 1.34834 * 117.00318 * 174.48292 * 15 14 13 17 17 H 1.08000 * 119.99252 * 5.05644 * 16 15 14 18 18 C 1.38650 * 119.99918 * 185.05677 * 16 15 14 19 19 N 1.31557 * 119.99440 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00520 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47471 * 89.99490 * 20 18 16 22 22 H 1.48496 * 109.47097 * 209.99888 * 20 18 16 23 23 H 1.48499 * 109.46628 * 329.99664 * 20 18 16 24 24 C 1.38872 * 119.86870 * 359.69966 * 14 13 12 25 25 C 1.38101 * 119.92758 * 0.02562 * 24 14 13 26 26 H 1.08995 * 109.47598 * 300.00270 * 1 2 3 27 27 H 1.08994 * 109.46802 * 60.00548 * 1 2 3 28 28 H 1.08998 * 109.46714 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47598 * 239.99729 * 2 1 3 30 30 H 1.09006 * 109.46877 * 119.99061 * 2 1 3 31 31 H 1.08995 * 109.47155 * 59.99458 * 3 2 1 32 32 H 1.09001 * 109.46619 * 300.00011 * 3 2 1 33 33 H 1.09005 * 110.37993 * 333.52829 * 5 4 3 34 34 H 1.09000 * 110.38210 * 95.77524 * 5 4 3 35 35 H 0.96997 * 125.26751 * 180.42816 * 8 6 5 36 36 H 1.07998 * 119.96317 * 359.97438 * 12 11 9 37 37 H 1.07989 * 120.03593 * 180.26959 * 13 12 11 38 38 H 0.97004 * 119.99920 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.04025 * 179.97438 * 24 14 13 40 40 H 1.08006 * 119.96604 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0397 0.6667 1.1468 6 6 5.3006 1.3964 1.5557 7 8 6.1841 0.9474 2.2549 8 7 5.2763 2.6316 1.0123 9 6 4.0394 2.8040 0.2406 10 1 3.3203 3.3914 0.8115 11 6 4.3374 3.4829 -1.0713 12 6 3.5869 3.1779 -2.1923 13 6 3.8538 3.8026 -3.3947 14 6 4.8848 4.7291 -3.4802 15 8 5.1538 5.3401 -4.6623 16 6 6.0898 6.3105 -4.6507 17 1 6.6453 6.5141 -3.7472 18 6 6.3391 7.0470 -5.7988 19 7 7.2520 7.9941 -5.7873 20 14 5.3777 6.6952 -7.3613 21 1 4.1526 7.5339 -7.3882 22 1 6.2202 7.0115 -8.5425 23 1 4.9962 5.2605 -7.3952 24 6 5.6402 5.0292 -2.3542 25 6 5.3647 4.4053 -1.1534 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.3215 0.6613 1.9667 34 1 4.2719 -0.3531 0.8399 35 1 5.9698 3.3021 1.1145 36 1 2.7887 2.4534 -2.1262 37 1 3.2647 3.5672 -4.2686 38 1 7.4262 8.5096 -6.5903 39 1 6.4429 5.7489 -2.4177 40 1 5.9515 4.6384 -0.2771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840821302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:45 Heat of formation + Delta-G solvation = -14.846108 kcal Electronic energy + Delta-G solvation = -22701.819210 eV Core-core repulsion = 19289.905041 eV Total energy + Delta-G solvation = -3411.914169 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97447 -39.14518 -37.76718 -36.53516 -35.03040 -32.48229 -32.18835 -30.42678 -30.28299 -27.71997 -26.20561 -25.11249 -22.98346 -22.45081 -21.39264 -20.53191 -20.47235 -17.95290 -17.79476 -17.20181 -16.73959 -15.59571 -15.41133 -15.11278 -14.74744 -14.53749 -14.43240 -13.98760 -13.87748 -13.77614 -13.48791 -13.19955 -13.12907 -12.76543 -12.36956 -12.30680 -12.13315 -11.96886 -11.53199 -11.38217 -11.07562 -11.01326 -10.82904 -10.61313 -10.21765 -10.09281 -9.60120 -9.46742 -8.94064 -8.74870 -8.35559 -7.43790 -6.48285 -4.15294 2.00618 2.05230 2.41059 3.13479 3.18720 3.21813 3.36072 3.51534 4.12752 4.18182 4.38665 4.45495 4.66807 4.76550 4.86768 4.97050 4.98792 5.02714 5.08361 5.18773 5.27198 5.37771 5.42749 5.44354 5.65675 5.75302 5.84776 5.93237 6.02335 6.08785 6.20095 6.39750 6.47282 6.67040 6.76470 6.85823 6.96536 7.13957 7.18570 7.50375 7.71759 7.95921 8.07295 8.86512 9.47582 10.59063 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.003731 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.966836 B = 7503.263809 C = 8614.464756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.039 3.961 4 N -0.497 5.497 5 C 0.000 4.000 6 C 0.520 3.480 7 O -0.531 6.531 8 N -0.725 5.725 9 C 0.342 3.658 10 H 0.069 0.931 11 C -0.186 4.186 12 C -0.047 4.047 13 C -0.194 4.194 14 C 0.165 3.835 15 O -0.214 6.214 16 C -0.391 4.391 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.877 5.877 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.220 4.220 25 C -0.061 4.061 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.418 0.582 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.280 0.720 39 H 0.134 0.866 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 -12.055 11.541 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.089 4.089 4 N -0.223 5.223 5 C -0.131 4.131 6 C 0.306 3.694 7 O -0.407 6.407 8 N -0.383 5.383 9 C 0.148 3.852 10 H 0.086 0.914 11 C -0.188 4.188 12 C -0.066 4.066 13 C -0.213 4.213 14 C 0.112 3.888 15 O -0.118 6.118 16 C -0.467 4.467 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.514 5.514 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.239 4.239 25 C -0.080 4.080 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.260 0.740 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.838 -12.434 11.028 20.404 hybrid contribution -0.130 0.790 0.070 0.804 sum -11.968 -11.643 11.098 20.049 Atomic orbital electron populations 1.21732 0.95218 1.01947 1.02042 1.21593 0.95910 0.95704 1.03084 1.22628 0.85783 0.98197 1.02274 1.65654 1.09395 1.08215 1.38992 1.23145 0.95372 1.00551 0.94054 1.20990 0.87666 0.82293 0.78498 1.90766 1.40365 1.71085 1.38437 1.46719 1.23294 1.16527 1.51736 1.20870 0.84541 0.89488 0.90279 0.91421 1.19096 1.02354 1.03261 0.94115 1.20458 0.98241 0.96877 0.90977 1.20227 1.00516 1.02044 0.98530 1.19173 0.92434 0.91726 0.85461 1.83577 1.54327 1.46809 1.27125 1.20776 1.14202 1.10536 1.01165 0.87579 1.24482 0.96324 0.94369 0.98776 1.69646 1.31141 1.20308 1.30333 0.86172 0.79608 0.80148 0.80946 1.19821 1.20718 1.18295 1.21203 1.04270 1.05742 0.92708 1.20428 0.95605 0.95156 0.96789 0.92819 0.92298 0.92414 0.90593 0.91841 0.93893 0.88937 0.89686 0.86512 0.74035 0.86075 0.86352 0.90944 0.84808 0.87749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.13 -0.85 5.75 -26.73 -0.15 -1.00 16 3 C 0.04 0.32 4.43 -3.83 -0.02 0.30 16 4 N -0.50 -5.22 4.66 -230.58 -1.07 -6.30 16 5 C 0.00 0.00 5.35 -3.94 -0.02 -0.03 16 6 C 0.52 6.91 8.61 -10.60 -0.09 6.82 16 7 O -0.53 -8.93 18.03 5.55 0.10 -8.83 16 8 N -0.72 -8.90 5.72 -56.83 -0.32 -9.22 16 9 C 0.34 4.04 3.46 -126.73 -0.44 3.61 16 10 H 0.07 0.71 7.59 -51.93 -0.39 0.32 16 11 C -0.19 -2.78 5.67 -104.58 -0.59 -3.38 16 12 C -0.05 -0.72 9.21 -39.61 -0.36 -1.09 16 13 C -0.19 -3.59 9.99 -39.39 -0.39 -3.98 16 14 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 15 O -0.21 -5.46 8.59 0.03 0.00 -5.46 16 16 C -0.39 -10.75 9.95 30.88 0.31 -10.44 16 17 H 0.11 2.97 5.44 -52.49 -0.29 2.69 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -24.88 13.96 55.48 0.77 -24.11 16 20 Si 0.91 21.17 28.62 -169.99 -4.86 16.31 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.22 -4.49 9.17 -39.40 -0.36 -4.85 16 25 C -0.06 -1.01 9.31 -39.61 -0.37 -1.38 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.40 6.81 -51.93 -0.35 0.05 16 31 H 0.04 0.31 7.82 -51.93 -0.41 -0.09 16 32 H 0.09 0.77 6.06 -51.93 -0.31 0.46 16 33 H 0.09 0.67 7.37 -51.93 -0.38 0.29 16 34 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.42 4.84 7.41 -40.82 -0.30 4.53 16 36 H 0.12 1.54 5.18 -52.49 -0.27 1.27 16 37 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 40 H 0.10 1.46 6.61 -52.48 -0.35 1.11 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -30.74 326.84 -7.97 -38.71 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.03 Total: 4.87 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.48 Total: -10.90 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.62 Total: -39.63 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.10 Total: -14.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.86 Total: 16.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.74 -7.97 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840821302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.869 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds