Wall clock time and date at job start Tue Mar 31 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 N 1.46904 * 109.47363 * 180.02562 * 3 2 1 5 5 C 1.48232 * 111.00187 * 75.88804 * 4 3 2 6 6 C 1.51310 * 104.76790 * 145.28925 * 5 4 3 7 7 O 1.21279 * 125.75220 * 163.23524 * 6 5 4 8 8 N 1.34857 * 108.50049 * 343.23900 * 6 5 4 9 9 C 1.46802 * 109.58617 * 359.57197 * 8 6 5 10 10 H 1.09001 * 110.17324 * 258.39644 * 9 8 6 11 11 C 1.50706 * 110.11504 * 136.76743 * 9 8 6 12 12 C 1.38324 * 119.96204 * 213.25502 * 11 9 8 13 13 C 1.38286 * 120.13752 * 179.70617 * 12 11 9 14 14 C 1.38127 * 120.06234 * 0.59238 * 13 12 11 15 15 C 1.38851 * 119.93236 * 359.43459 * 14 13 12 16 16 O 1.35757 * 120.07056 * 180.25387 * 15 14 13 17 17 C 1.34830 * 116.99530 * 354.45995 * 16 15 14 18 18 H 1.07996 * 120.00331 * 5.05380 * 17 16 15 19 19 C 1.38652 * 119.99798 * 185.06071 * 17 16 15 20 20 N 1.31559 * 120.00088 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00175 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47306 * 89.99870 * 21 19 17 23 23 H 1.48496 * 109.47419 * 210.00227 * 21 19 17 24 24 H 1.48500 * 109.47137 * 330.00291 * 21 19 17 25 25 C 1.38071 * 119.96658 * 33.28126 * 11 9 8 26 26 H 1.08997 * 109.47222 * 299.99775 * 1 2 3 27 27 H 1.09003 * 109.47333 * 59.99982 * 1 2 3 28 28 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46976 * 240.00437 * 2 1 3 30 30 H 1.08995 * 109.47383 * 120.00350 * 2 1 3 31 31 H 1.09005 * 109.46758 * 60.00304 * 3 2 1 32 32 H 1.08995 * 109.47198 * 300.00464 * 3 2 1 33 33 H 1.08998 * 110.38271 * 264.11676 * 5 4 3 34 34 H 1.09004 * 110.37620 * 26.35684 * 5 4 3 35 35 H 0.96990 * 125.20371 * 179.61134 * 8 6 5 36 36 H 1.07997 * 119.93603 * 359.97438 * 12 11 9 37 37 H 1.07990 * 119.96805 * 180.32617 * 13 12 11 38 38 H 1.08000 * 120.03195 * 179.69947 * 14 13 12 39 39 H 0.96996 * 120.00113 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.03895 * 0.02562 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0397 1.1053 -1.3430 6 6 5.3007 1.9306 -1.4777 7 8 6.1841 1.7477 -2.2882 8 7 5.2769 2.9039 -0.5445 9 6 4.0397 2.8038 0.2394 10 1 3.3206 3.5511 -0.0960 11 6 4.3378 2.9930 1.7046 12 6 3.5958 2.3136 2.6539 13 6 3.8702 2.4799 3.9990 14 6 4.8787 3.3348 4.3990 15 6 5.6249 4.0186 3.4484 16 8 6.6201 4.8556 3.8382 17 6 6.7582 5.0673 5.1626 18 1 6.1475 4.5181 5.8639 19 6 7.6842 5.9903 5.6243 20 7 7.8194 6.1965 6.9165 21 14 8.7410 6.9398 4.4114 22 1 8.0487 8.1970 4.0301 23 1 10.0462 7.2647 5.0406 24 1 8.9681 6.1126 3.1993 25 6 5.3509 3.8447 2.0979 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 4.2736 0.0423 -1.4027 34 1 3.3206 1.3789 -2.1151 35 1 5.9706 3.5686 -0.4120 36 1 2.8034 1.6486 2.3438 37 1 3.2926 1.9441 4.7376 38 1 5.0893 3.4680 5.4498 39 1 8.4674 6.8419 7.2395 40 1 5.9293 4.3755 1.3562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840823458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:47 Heat of formation + Delta-G solvation = -15.613210 kcal Electronic energy + Delta-G solvation = -22842.931732 eV Core-core repulsion = 19430.984299 eV Total energy + Delta-G solvation = -3411.947433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98789 -39.13360 -37.74960 -36.46464 -35.06073 -32.45057 -32.27131 -31.01552 -29.48435 -27.78416 -26.18272 -25.25597 -23.14747 -22.19367 -21.37111 -20.75612 -20.40276 -18.02887 -17.69344 -16.99409 -16.57054 -15.70200 -15.27315 -15.08110 -14.99683 -14.52420 -14.42966 -14.08285 -13.97098 -13.76689 -13.57398 -13.18721 -13.06151 -12.76232 -12.37627 -12.27025 -12.11697 -11.93874 -11.42741 -11.37349 -11.04164 -10.91574 -10.82017 -10.65385 -10.22388 -10.09269 -9.64779 -9.46975 -8.92657 -8.79894 -8.30026 -7.45711 -6.46187 -4.13707 1.86036 2.17941 2.41712 3.12747 3.19338 3.22392 3.36765 3.46565 4.09773 4.19484 4.38237 4.46149 4.62886 4.72327 4.90646 4.96079 5.04067 5.06134 5.07459 5.15030 5.29677 5.38181 5.46797 5.49607 5.72832 5.79601 5.84541 5.96624 6.03577 6.07327 6.15626 6.34112 6.42444 6.64683 6.76445 6.88296 7.01489 7.12710 7.22159 7.50112 7.73120 7.97703 8.07717 8.88795 9.49669 10.61358 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.004092 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.180545 B = 6841.388553 C = 8025.609462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.039 3.961 4 N -0.495 5.495 5 C -0.001 4.001 6 C 0.521 3.479 7 O -0.529 6.529 8 N -0.723 5.723 9 C 0.332 3.668 10 H 0.076 0.924 11 C -0.057 4.057 12 C -0.174 4.174 13 C -0.077 4.077 14 C -0.214 4.214 15 C 0.160 3.840 16 O -0.217 6.217 17 C -0.391 4.391 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.878 5.878 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.181 4.181 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.421 0.579 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.280 0.720 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 -8.810 -13.147 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.089 4.089 4 N -0.221 5.221 5 C -0.131 4.131 6 C 0.306 3.694 7 O -0.404 6.404 8 N -0.381 5.381 9 C 0.138 3.862 10 H 0.093 0.907 11 C -0.058 4.058 12 C -0.193 4.193 13 C -0.095 4.095 14 C -0.233 4.233 15 C 0.108 3.892 16 O -0.122 6.122 17 C -0.466 4.466 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.516 5.516 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.201 4.201 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.263 0.737 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.151 0.849 39 H 0.090 0.910 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.976 -9.103 -13.142 20.590 hybrid contribution 0.488 1.323 -0.581 1.525 sum -12.488 -7.780 -13.723 20.119 Atomic orbital electron populations 1.21743 0.95399 1.01933 1.01913 1.21458 0.95405 0.95565 1.03158 1.22614 0.85585 0.98537 1.02154 1.65538 1.09596 1.22041 1.24888 1.23208 0.95570 1.02776 0.91586 1.20932 0.87669 0.80905 0.79893 1.90771 1.40320 1.71144 1.38181 1.46650 1.23145 1.33512 1.34838 1.20933 0.85009 0.90460 0.89801 0.90724 1.19082 0.96824 0.97620 0.92294 1.20460 1.03150 1.03520 0.92184 1.20817 0.96470 0.96828 0.95395 1.21352 0.99658 1.01622 1.00665 1.18949 0.87656 0.90205 0.92402 1.83569 1.44363 1.56867 1.27414 1.20754 1.23435 1.24162 0.78275 0.87586 1.24460 0.96991 0.96293 0.96169 1.69641 1.35261 1.34500 1.12208 0.86190 0.79230 0.80239 0.81295 1.19875 1.20732 1.18383 1.19769 1.01790 1.05088 0.93482 0.92389 0.92900 0.92408 0.91934 0.90603 0.89148 0.93797 0.86450 0.89596 0.73669 0.86492 0.86969 0.84890 0.90990 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.82 6.06 -26.73 -0.16 -0.99 16 3 C 0.04 0.31 3.95 -3.82 -0.02 0.30 16 4 N -0.49 -5.23 4.49 -230.57 -1.04 -6.26 16 5 C 0.00 -0.01 6.10 -3.94 -0.02 -0.03 16 6 C 0.52 7.14 8.61 -10.65 -0.09 7.05 16 7 O -0.53 -9.15 18.03 5.56 0.10 -9.05 16 8 N -0.72 -9.45 5.72 -56.86 -0.33 -9.77 16 9 C 0.33 4.05 3.43 -126.73 -0.43 3.62 16 10 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 11 C -0.06 -0.88 5.66 -104.65 -0.59 -1.47 16 12 C -0.17 -2.63 9.06 -39.53 -0.36 -2.98 16 13 C -0.08 -1.29 10.04 -39.60 -0.40 -1.69 16 14 C -0.21 -4.38 9.17 -39.40 -0.36 -4.74 16 15 C 0.16 3.53 6.65 -39.11 -0.26 3.27 16 16 O -0.22 -5.56 8.59 0.03 0.00 -5.56 16 17 C -0.39 -10.78 9.95 30.89 0.31 -10.47 16 18 H 0.11 2.98 5.44 -52.49 -0.29 2.69 16 19 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 20 N -0.88 -25.04 13.96 55.48 0.77 -24.27 16 21 Si 0.90 21.40 28.62 -169.99 -4.86 16.53 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.26 -6.18 7.11 56.52 0.40 -5.77 16 25 C -0.18 -3.34 9.26 -39.40 -0.36 -3.70 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.42 7.74 -51.93 -0.40 0.02 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.75 6.45 -51.93 -0.33 0.41 16 32 H 0.04 0.30 7.65 -51.93 -0.40 -0.09 16 33 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.09 0.68 7.51 -51.93 -0.39 0.29 16 35 H 0.42 5.45 7.45 -40.82 -0.30 5.14 16 36 H 0.12 1.47 5.52 -52.49 -0.29 1.18 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 39 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.11 1.90 6.66 -52.49 -0.35 1.55 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -30.95 328.97 -8.00 -38.95 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.12 Total: 5.16 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.48 Total: -10.68 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.59 Total: -40.30 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.10 Total: -14.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.95 -8.00 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840823458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.332 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds