Wall clock time and date at job start Tue Mar 31 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47282 * 2 1 4 4 N 1.46904 * 109.47363 * 180.02562 * 3 2 1 5 5 C 1.48232 * 111.00187 * 75.88804 * 4 3 2 6 6 C 1.51310 * 104.76790 * 145.28925 * 5 4 3 7 7 O 1.21279 * 125.75220 * 163.23524 * 6 5 4 8 8 N 1.34857 * 108.50049 * 343.23900 * 6 5 4 9 9 C 1.46802 * 109.58617 * 359.57197 * 8 6 5 10 10 H 1.09001 * 110.17324 * 258.39644 * 9 8 6 11 11 C 1.50706 * 110.11504 * 136.76743 * 9 8 6 12 12 C 1.38324 * 119.96204 * 213.25502 * 11 9 8 13 13 C 1.38286 * 120.13752 * 179.70617 * 12 11 9 14 14 C 1.38127 * 120.06234 * 0.59238 * 13 12 11 15 15 C 1.38851 * 119.93236 * 359.43459 * 14 13 12 16 16 O 1.35757 * 120.07056 * 180.25387 * 15 14 13 17 17 C 1.34830 * 116.99530 * 354.45995 * 16 15 14 18 18 H 1.07996 * 120.00331 * 5.05380 * 17 16 15 19 19 C 1.38652 * 119.99798 * 185.06071 * 17 16 15 20 20 N 1.31559 * 120.00088 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00175 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47306 * 89.99870 * 21 19 17 23 23 H 1.48496 * 109.47419 * 210.00227 * 21 19 17 24 24 H 1.48500 * 109.47137 * 330.00291 * 21 19 17 25 25 C 1.38071 * 119.96658 * 33.28126 * 11 9 8 26 26 H 1.08997 * 109.47222 * 299.99775 * 1 2 3 27 27 H 1.09003 * 109.47333 * 59.99982 * 1 2 3 28 28 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46976 * 240.00437 * 2 1 3 30 30 H 1.08995 * 109.47383 * 120.00350 * 2 1 3 31 31 H 1.09005 * 109.46758 * 60.00304 * 3 2 1 32 32 H 1.08995 * 109.47198 * 300.00464 * 3 2 1 33 33 H 1.08998 * 110.38271 * 264.11676 * 5 4 3 34 34 H 1.09004 * 110.37620 * 26.35684 * 5 4 3 35 35 H 0.96990 * 125.20371 * 179.61134 * 8 6 5 36 36 H 1.07997 * 119.93603 * 359.97438 * 12 11 9 37 37 H 1.07990 * 119.96805 * 180.32617 * 13 12 11 38 38 H 1.08000 * 120.03195 * 179.69947 * 14 13 12 39 39 H 0.96996 * 120.00113 * 179.97438 * 20 19 17 40 40 H 1.08000 * 120.03895 * 0.02562 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0397 1.1053 -1.3430 6 6 5.3007 1.9306 -1.4777 7 8 6.1841 1.7477 -2.2882 8 7 5.2769 2.9039 -0.5445 9 6 4.0397 2.8038 0.2394 10 1 3.3206 3.5511 -0.0960 11 6 4.3378 2.9930 1.7046 12 6 3.5958 2.3136 2.6539 13 6 3.8702 2.4799 3.9990 14 6 4.8787 3.3348 4.3990 15 6 5.6249 4.0186 3.4484 16 8 6.6201 4.8556 3.8382 17 6 6.7582 5.0673 5.1626 18 1 6.1475 4.5181 5.8639 19 6 7.6842 5.9903 5.6243 20 7 7.8194 6.1965 6.9165 21 14 8.7410 6.9398 4.4114 22 1 8.0487 8.1970 4.0301 23 1 10.0462 7.2647 5.0406 24 1 8.9681 6.1126 3.1993 25 6 5.3509 3.8447 2.0979 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9563 -0.8899 33 1 4.2736 0.0423 -1.4027 34 1 3.3206 1.3789 -2.1151 35 1 5.9706 3.5686 -0.4120 36 1 2.8034 1.6486 2.3438 37 1 3.2926 1.9441 4.7376 38 1 5.0893 3.4680 5.4498 39 1 8.4674 6.8419 7.2395 40 1 5.9293 4.3755 1.3562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840823458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:46 Heat of formation + Delta-G solvation = -37.728079 kcal Electronic energy + Delta-G solvation = -22843.890704 eV Core-core repulsion = 19430.984299 eV Total energy + Delta-G solvation = -3412.906405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.01207 -40.71771 -38.96046 -37.85463 -35.89598 -34.46663 -33.01883 -32.33189 -30.99395 -28.73361 -27.38767 -26.83506 -24.12249 -23.53520 -22.06546 -22.04887 -21.54322 -19.71688 -19.25457 -18.18747 -17.63641 -16.90547 -16.62758 -16.34838 -15.97724 -15.77033 -15.69190 -15.48145 -15.17646 -15.11732 -14.52703 -14.36723 -14.33065 -14.04135 -13.83152 -13.65066 -13.06638 -12.87223 -12.60633 -12.50496 -12.43592 -12.29422 -11.95614 -11.77306 -11.39086 -11.34476 -11.17452 -10.91973 -10.63852 -9.81654 -9.57111 -9.07683 -8.50861 -6.23513 0.42436 0.69132 1.30314 1.33475 1.38112 1.49980 2.13658 2.26309 2.56973 2.78220 3.01313 3.16178 3.23081 3.61356 3.93974 4.04065 4.10192 4.25340 4.27896 4.35482 4.47542 4.52779 4.58427 4.66962 4.71439 4.82849 4.87860 4.96821 5.13896 5.21529 5.33936 5.40173 5.42102 5.45176 5.59113 5.64277 5.73550 5.77511 5.87871 5.93677 5.94602 6.21728 6.83789 7.02994 7.58138 8.60768 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020268 B = 0.004092 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.180545 B = 6841.388553 C = 8025.609462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.036 3.964 4 N -0.504 5.504 5 C 0.011 3.989 6 C 0.514 3.486 7 O -0.572 6.572 8 N -0.726 5.726 9 C 0.335 3.665 10 H 0.104 0.896 11 C -0.049 4.049 12 C -0.147 4.147 13 C -0.075 4.075 14 C -0.233 4.233 15 C 0.120 3.880 16 O -0.247 6.247 17 C -0.398 4.398 18 H 0.083 0.917 19 C 0.011 3.989 20 N -0.923 5.923 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.265 1.265 25 C -0.181 4.181 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.418 0.582 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.107 0.893 39 H 0.284 0.716 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.311 -10.075 -15.824 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.091 4.091 4 N -0.230 5.230 5 C -0.119 4.119 6 C 0.301 3.699 7 O -0.451 6.451 8 N -0.383 5.383 9 C 0.141 3.859 10 H 0.121 0.879 11 C -0.051 4.051 12 C -0.165 4.165 13 C -0.093 4.093 14 C -0.253 4.253 15 C 0.071 3.929 16 O -0.154 6.154 17 C -0.474 4.474 18 H 0.100 0.900 19 C -0.187 4.187 20 N -0.564 5.564 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.189 1.189 25 C -0.201 4.201 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.259 0.741 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.506 -10.396 -15.826 24.474 hybrid contribution 0.975 1.477 0.118 1.774 sum -14.531 -8.918 -15.708 23.183 Atomic orbital electron populations 1.21726 0.94575 1.02249 1.02257 1.21428 0.96011 0.94814 1.02977 1.22743 0.83685 0.99421 1.03228 1.65526 1.11382 1.20593 1.25510 1.23235 0.94069 1.02541 0.92049 1.21569 0.88282 0.80951 0.79072 1.90749 1.42226 1.72229 1.39905 1.46778 1.23423 1.33323 1.34772 1.20991 0.85192 0.92512 0.87169 0.87918 1.19506 0.95062 0.95714 0.94794 1.20942 1.02560 1.01902 0.91140 1.21168 0.95256 0.95700 0.97205 1.21377 1.01314 1.03202 0.99376 1.19514 0.88263 0.90887 0.94260 1.83511 1.46884 1.59291 1.25758 1.20698 1.23309 1.24123 0.79268 0.90001 1.25241 0.98327 0.97346 0.97831 1.69724 1.36860 1.36098 1.13739 0.85248 0.78013 0.78881 0.78769 1.18905 1.19410 1.18941 1.20043 1.02519 1.05436 0.92083 0.92413 0.92204 0.92197 0.91430 0.91585 0.88994 0.91802 0.85436 0.86592 0.74054 0.82737 0.83920 0.87476 0.90604 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.44 16 2 C -0.11 -1.08 6.06 30.59 0.19 -0.89 16 3 C 0.04 0.39 3.95 86.30 0.34 0.73 16 4 N -0.50 -8.27 4.49 -883.40 -3.97 -12.24 16 5 C 0.01 0.18 6.10 85.49 0.52 0.70 16 6 C 0.51 12.84 8.61 87.84 0.76 13.59 16 7 O -0.57 -19.16 18.03 -3.03 -0.05 -19.21 16 8 N -0.73 -17.16 5.72 -452.14 -2.59 -19.75 16 9 C 0.34 6.84 3.43 128.11 0.44 7.28 16 10 H 0.10 1.64 7.79 -2.39 -0.02 1.63 16 11 C -0.05 -1.37 5.66 -19.88 -0.11 -1.48 16 12 C -0.15 -3.88 9.06 22.30 0.20 -3.67 16 13 C -0.08 -2.38 10.04 22.25 0.22 -2.16 16 14 C -0.23 -9.82 9.17 22.39 0.21 -9.62 16 15 C 0.12 5.41 6.65 22.58 0.15 5.56 16 16 O -0.25 -13.21 8.59 -22.82 -0.20 -13.41 16 17 C -0.40 -23.24 9.95 67.92 0.68 -22.56 16 18 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 19 C 0.01 0.63 5.49 84.83 0.47 1.09 16 20 N -0.92 -55.04 13.96 21.61 0.30 -54.74 16 21 Si 0.97 45.45 28.62 68.60 1.96 47.41 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 25 C -0.18 -6.51 9.26 22.39 0.21 -6.30 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.59 7.74 -2.38 -0.02 0.57 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.98 6.45 -2.38 -0.02 0.97 16 32 H 0.06 0.49 7.65 -2.39 -0.02 0.47 16 33 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.12 1.20 7.51 -2.38 -0.02 1.19 16 35 H 0.42 10.20 7.45 -92.72 -0.69 9.51 16 36 H 0.16 3.02 5.52 -2.91 -0.02 3.00 16 37 H 0.14 3.62 8.06 -2.92 -0.02 3.59 16 38 H 0.11 5.02 5.64 -2.91 -0.02 5.01 16 39 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.12 4.05 6.66 -2.91 -0.02 4.03 16 Total: -1.00 -71.46 328.97 0.81 -70.65 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.38 Total: 19.46 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 4.97 Total: -18.17 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -6.25 Total: -86.73 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.25 Total: -32.62 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.96 Total: 47.41 kcal Total: -71.46 0.81 -70.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840823458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.919 kcal (2) G-P(sol) polarization free energy of solvation -71.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds