Wall clock time and date at job start Tue Mar 31 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46736 * 2 1 4 4 H 1.08991 * 109.47278 * 305.15265 * 3 2 1 5 5 C 1.50706 * 109.46575 * 185.15411 * 3 2 1 6 6 H 1.08001 * 119.99672 * 245.45136 * 5 3 2 7 7 C 1.37879 * 119.99848 * 65.45492 * 5 3 2 8 8 N 1.31515 * 120.00126 * 9.50294 * 7 5 3 9 9 Si 1.86798 * 119.99595 * 189.49560 * 7 5 3 10 10 H 1.48494 * 109.47123 * 84.99599 * 9 7 5 11 11 H 1.48507 * 109.47045 * 204.99481 * 9 7 5 12 12 H 1.48499 * 109.47600 * 324.99462 * 9 7 5 13 13 O 1.45201 * 109.47138 * 65.15726 * 3 2 1 14 14 C 1.34224 * 116.99838 * 269.99224 * 13 3 2 15 15 O 1.20830 * 120.00013 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00006 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.62832 * 60.00611 * 16 14 13 18 18 C 1.53311 * 109.63572 * 180.40530 * 16 14 13 19 19 C 1.52723 * 108.56453 * 189.27453 * 18 16 14 20 20 C 1.50437 * 110.59381 * 309.27643 * 19 18 16 21 21 N 1.32896 * 118.53135 * 197.28451 * 20 19 18 22 22 C 1.31607 * 121.06182 * 180.54990 * 21 20 19 23 23 N 1.31816 * 121.66957 * 359.96758 * 22 21 20 24 24 C 1.32190 * 120.64033 * 359.88503 * 23 22 21 25 25 C 1.37768 * 122.57945 * 17.61133 * 20 19 18 26 26 C 1.50338 * 122.80316 * 359.31743 * 25 20 19 27 27 H 1.08999 * 109.47176 * 299.99896 * 1 2 3 28 28 H 1.08996 * 109.47241 * 60.00485 * 1 2 3 29 29 H 1.09002 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47385 * 239.99613 * 2 1 3 31 31 H 1.09003 * 109.46885 * 120.00078 * 2 1 3 32 32 H 0.96999 * 119.99728 * 179.97438 * 8 7 5 33 33 H 1.09008 * 109.62698 * 309.18753 * 18 16 14 34 34 H 1.08998 * 109.62775 * 69.76864 * 18 16 14 35 35 H 1.08994 * 109.34310 * 188.85338 * 19 18 16 36 36 H 1.09003 * 108.95906 * 69.44334 * 19 18 16 37 37 H 1.07999 * 119.16527 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.36242 * 180.02562 * 24 23 22 39 39 H 1.08995 * 109.30638 * 257.29559 * 26 25 20 40 40 H 1.08995 * 109.30837 * 137.89260 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6032 1.9822 -0.8402 5 6 3.5416 1.4444 -0.1276 6 1 4.1521 1.8080 0.6856 7 6 4.1358 0.9819 -1.2827 8 7 3.3999 0.7156 -2.3396 9 14 5.9862 0.7340 -1.3462 10 1 6.3248 -0.6065 -0.8044 11 1 6.4505 0.8309 -2.7535 12 1 6.6542 1.7804 -0.5314 13 8 1.6590 2.0905 1.2423 14 6 0.4759 2.7243 1.2611 15 8 -0.2186 2.7368 0.2724 16 6 0.0133 3.4193 2.5157 17 1 0.7292 4.1940 2.7904 18 6 -1.3631 4.0511 2.2770 19 6 -1.7048 4.9380 3.4724 20 6 -1.5209 4.1835 4.7608 21 7 -2.0908 4.6604 5.8626 22 6 -1.9533 4.0464 7.0185 23 7 -1.2494 2.9380 7.1340 24 6 -0.6563 2.4037 6.0803 25 6 -0.7809 3.0244 4.8426 26 6 -0.1054 2.4036 3.6515 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8181 0.3906 -3.1523 33 1 -1.3376 4.6515 1.3676 34 1 -2.1141 3.2670 2.1806 35 1 -2.7405 5.2681 3.3926 36 1 -1.0480 5.8079 3.4672 37 1 -2.4295 4.4612 7.8947 38 1 -0.0809 1.4952 6.1799 39 1 -0.6895 1.5487 3.3109 40 1 0.8903 2.0650 3.9377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842771861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:39 Heat of formation + Delta-G solvation = -64.242149 kcal Electronic energy + Delta-G solvation = -23201.199343 eV Core-core repulsion = 19787.143201 eV Total energy + Delta-G solvation = -3414.056142 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52350 -39.85262 -37.19479 -35.65747 -34.23919 -33.48421 -31.66707 -31.46034 -30.50225 -27.34524 -25.53607 -24.53818 -23.21380 -23.14571 -21.64492 -20.10425 -19.30449 -17.92507 -17.19520 -16.92705 -16.56689 -15.95558 -15.32497 -15.12855 -14.62663 -14.28363 -14.18198 -14.02438 -13.80102 -13.26281 -13.13134 -12.92559 -12.45959 -12.04964 -11.98136 -11.61094 -11.42023 -11.23779 -11.14730 -11.07176 -11.01203 -10.90430 -10.68955 -10.53339 -10.30362 -9.91926 -9.60160 -9.42203 -9.36965 -9.33881 -8.88007 -8.49945 -6.24128 -4.28064 0.73043 0.86307 2.91130 3.22506 3.28073 3.30335 3.53146 3.57091 3.81523 4.02767 4.26175 4.31323 4.45293 4.52614 4.77182 4.98056 5.09005 5.10628 5.17174 5.28368 5.35661 5.55190 5.58531 5.65778 5.82311 5.95051 5.99285 6.10902 6.14647 6.18503 6.28063 6.34945 6.76828 6.80354 6.90073 7.07179 7.14733 7.53218 7.64018 7.83698 7.90223 8.09075 8.58908 8.86116 9.36366 10.84767 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026008 B = 0.003712 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.336827 B = 7541.472995 C = 7853.657539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.054 0.946 5 C -0.526 4.526 6 H 0.068 0.932 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.906 3.094 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.354 6.354 14 C 0.457 3.543 15 O -0.512 6.512 16 C -0.084 4.084 17 H 0.107 0.893 18 C -0.104 4.104 19 C -0.072 4.072 20 C 0.179 3.821 21 N -0.522 5.522 22 C 0.285 3.715 23 N -0.523 5.523 24 C 0.152 3.848 25 C -0.172 4.172 26 C -0.064 4.064 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.033 0.967 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.267 0.733 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.194 0.806 38 H 0.170 0.830 39 H 0.089 0.911 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 4.731 13.390 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.564 4.564 6 H 0.087 0.913 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.733 3.267 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.270 6.270 14 C 0.299 3.701 15 O -0.402 6.402 16 C -0.103 4.103 17 H 0.125 0.875 18 C -0.141 4.141 19 C -0.110 4.110 20 C 0.035 3.965 21 N -0.236 5.236 22 C -0.003 4.003 23 N -0.237 5.237 24 C -0.015 4.015 25 C -0.176 4.176 26 C -0.103 4.103 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.211 0.789 38 H 0.188 0.812 39 H 0.107 0.893 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.661 5.032 13.685 17.491 hybrid contribution 1.318 -0.620 -0.847 1.685 sum -8.343 4.413 12.839 15.934 Atomic orbital electron populations 1.21865 0.98081 0.99117 1.01010 1.21920 0.92943 0.99444 1.02270 1.20677 0.95192 0.88532 0.78911 0.92834 1.20984 0.89590 1.43987 1.01838 0.91346 1.24890 0.99054 0.95128 0.94637 1.69985 1.35988 1.43954 1.02214 0.86374 0.84089 0.78921 0.77283 1.20228 1.21069 1.19668 1.86467 1.34148 1.62337 1.44053 1.23028 0.80914 0.77051 0.89100 1.90620 1.55411 1.58181 1.35948 1.21022 0.98862 0.98402 0.92054 0.87481 1.21486 0.95124 0.99714 0.97827 1.20449 1.04048 0.97969 0.88495 1.21390 0.89410 0.91106 0.94564 1.68389 1.21754 1.33955 0.99501 1.24866 0.92296 0.88147 0.95036 1.68417 1.09677 1.12385 1.33219 1.23327 0.93110 0.97979 0.87123 1.21179 1.00884 0.97691 0.97847 1.20278 1.01904 0.97515 0.90560 0.94717 0.92626 0.94762 0.89292 0.93643 0.92365 0.89024 0.90590 0.88628 0.88854 0.78947 0.81241 0.89314 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.57 37.16 0.32 -2.62 16 2 C -0.13 -2.98 5.54 -26.73 -0.15 -3.13 16 3 C 0.22 5.55 2.11 -27.88 -0.06 5.49 16 4 H 0.05 1.53 7.10 -51.93 -0.37 1.16 16 5 C -0.53 -14.26 8.82 -34.44 -0.30 -14.56 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C 0.07 1.77 5.16 -17.82 -0.09 1.68 16 8 N -0.88 -24.67 12.16 55.43 0.67 -24.00 16 9 Si 0.91 20.59 29.55 -169.99 -5.02 15.56 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 O -0.35 -7.75 9.75 -39.24 -0.38 -8.14 16 14 C 0.46 8.56 5.70 36.01 0.21 8.77 16 15 O -0.51 -10.87 12.99 -18.75 -0.24 -11.12 16 16 C -0.08 -1.12 2.65 -91.70 -0.24 -1.36 16 17 H 0.11 1.31 8.11 -51.93 -0.42 0.89 16 18 C -0.10 -1.19 4.71 -26.71 -0.13 -1.32 16 19 C -0.07 -0.71 5.95 -28.15 -0.17 -0.88 16 20 C 0.18 2.04 6.63 -82.43 -0.55 1.50 16 21 N -0.52 -6.11 10.32 -11.00 -0.11 -6.22 16 22 C 0.28 3.01 12.29 -92.30 -1.13 1.88 16 23 N -0.52 -5.97 10.44 -14.54 -0.15 -6.12 16 24 C 0.15 1.60 10.94 -17.11 -0.19 1.42 16 25 C -0.17 -1.91 5.74 -104.68 -0.60 -2.51 16 26 C -0.06 -0.74 4.98 -28.14 -0.14 -0.88 16 27 H 0.03 0.67 6.05 -51.93 -0.31 0.35 16 28 H 0.05 1.21 7.80 -51.93 -0.41 0.81 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.27 6.80 -51.93 -0.35 1.91 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.09 1.10 7.81 -51.92 -0.41 0.69 16 34 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -30.72 329.14 -9.12 -39.84 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.62 Total: 1.75 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.22 Total: -6.52 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.41 Total: -36.34 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.63 Total: -19.25 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.72 -9.12 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.406 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds