Wall clock time and date at job start Tue Mar 31 2020 06:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46736 * 2 1 4 4 H 1.08991 * 109.47278 * 305.15265 * 3 2 1 5 5 C 1.50706 * 109.46575 * 185.15411 * 3 2 1 6 6 H 1.08001 * 119.99672 * 245.45136 * 5 3 2 7 7 C 1.37879 * 119.99848 * 65.45492 * 5 3 2 8 8 N 1.31515 * 120.00126 * 9.50294 * 7 5 3 9 9 Si 1.86798 * 119.99595 * 189.49560 * 7 5 3 10 10 H 1.48494 * 109.47123 * 84.99599 * 9 7 5 11 11 H 1.48507 * 109.47045 * 204.99481 * 9 7 5 12 12 H 1.48499 * 109.47600 * 324.99462 * 9 7 5 13 13 O 1.45201 * 109.47138 * 65.15726 * 3 2 1 14 14 C 1.34224 * 116.99838 * 269.99224 * 13 3 2 15 15 O 1.20830 * 120.00013 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00006 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.62832 * 60.00611 * 16 14 13 18 18 C 1.53311 * 109.63572 * 180.40530 * 16 14 13 19 19 C 1.52723 * 108.56453 * 189.27453 * 18 16 14 20 20 C 1.50437 * 110.59381 * 309.27643 * 19 18 16 21 21 N 1.32896 * 118.53135 * 197.28451 * 20 19 18 22 22 C 1.31607 * 121.06182 * 180.54990 * 21 20 19 23 23 N 1.31816 * 121.66957 * 359.96758 * 22 21 20 24 24 C 1.32190 * 120.64033 * 359.88503 * 23 22 21 25 25 C 1.37768 * 122.57945 * 17.61133 * 20 19 18 26 26 C 1.50338 * 122.80316 * 359.31743 * 25 20 19 27 27 H 1.08999 * 109.47176 * 299.99896 * 1 2 3 28 28 H 1.08996 * 109.47241 * 60.00485 * 1 2 3 29 29 H 1.09002 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47385 * 239.99613 * 2 1 3 31 31 H 1.09003 * 109.46885 * 120.00078 * 2 1 3 32 32 H 0.96999 * 119.99728 * 179.97438 * 8 7 5 33 33 H 1.09008 * 109.62698 * 309.18753 * 18 16 14 34 34 H 1.08998 * 109.62775 * 69.76864 * 18 16 14 35 35 H 1.08994 * 109.34310 * 188.85338 * 19 18 16 36 36 H 1.09003 * 108.95906 * 69.44334 * 19 18 16 37 37 H 1.07999 * 119.16527 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.36242 * 180.02562 * 24 23 22 39 39 H 1.08995 * 109.30638 * 257.29559 * 26 25 20 40 40 H 1.08995 * 109.30837 * 137.89260 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6032 1.9822 -0.8402 5 6 3.5416 1.4444 -0.1276 6 1 4.1521 1.8080 0.6856 7 6 4.1358 0.9819 -1.2827 8 7 3.3999 0.7156 -2.3396 9 14 5.9862 0.7340 -1.3462 10 1 6.3248 -0.6065 -0.8044 11 1 6.4505 0.8309 -2.7535 12 1 6.6542 1.7804 -0.5314 13 8 1.6590 2.0905 1.2423 14 6 0.4759 2.7243 1.2611 15 8 -0.2186 2.7368 0.2724 16 6 0.0133 3.4193 2.5157 17 1 0.7292 4.1940 2.7904 18 6 -1.3631 4.0511 2.2770 19 6 -1.7048 4.9380 3.4724 20 6 -1.5209 4.1835 4.7608 21 7 -2.0908 4.6604 5.8626 22 6 -1.9533 4.0464 7.0185 23 7 -1.2494 2.9380 7.1340 24 6 -0.6563 2.4037 6.0803 25 6 -0.7809 3.0244 4.8426 26 6 -0.1054 2.4036 3.6515 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8181 0.3906 -3.1523 33 1 -1.3376 4.6515 1.3676 34 1 -2.1141 3.2670 2.1806 35 1 -2.7405 5.2681 3.3926 36 1 -1.0480 5.8079 3.4672 37 1 -2.4295 4.4612 7.8947 38 1 -0.0809 1.4952 6.1799 39 1 -0.6895 1.5487 3.3109 40 1 0.8903 2.0650 3.9377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842771861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:39 Heat of formation + Delta-G solvation = -80.333215 kcal Electronic energy + Delta-G solvation = -23201.897104 eV Core-core repulsion = 19787.143201 eV Total energy + Delta-G solvation = -3414.753903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.40047 -41.37475 -38.39450 -37.22222 -35.44666 -35.04139 -33.45260 -32.47438 -31.47171 -29.26267 -26.56457 -25.62355 -24.94837 -24.00076 -22.99500 -21.67812 -20.67074 -19.08278 -18.54191 -18.40355 -17.77772 -17.41958 -16.95271 -16.38344 -16.02451 -15.40676 -15.32082 -14.91657 -14.76952 -14.74764 -14.56049 -14.17416 -13.77982 -13.44984 -13.30586 -13.18104 -13.13388 -12.90052 -12.77676 -12.49804 -12.20239 -12.13732 -12.01222 -11.88487 -11.76239 -11.41868 -11.35683 -11.07683 -10.78846 -10.53289 -10.21148 -10.18043 -8.28926 -6.41559 -0.08246 0.04377 1.39383 1.42744 1.44490 1.54358 2.03240 2.42656 2.75146 3.01866 3.02798 3.27895 3.44829 3.49567 3.60225 3.77980 3.97592 4.20536 4.27382 4.31179 4.37121 4.39420 4.42817 4.54256 4.58582 4.69646 4.78104 4.86184 4.89529 5.06535 5.07497 5.10033 5.19780 5.22407 5.38306 5.47195 5.54654 5.63678 5.93357 5.99000 6.17661 6.64418 7.04549 7.09649 7.29853 8.80225 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026008 B = 0.003712 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.336827 B = 7541.472995 C = 7853.657539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 C 0.224 3.776 4 H 0.010 0.990 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.974 3.026 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.265 1.265 13 O -0.360 6.360 14 C 0.453 3.547 15 O -0.539 6.539 16 C -0.075 4.075 17 H 0.122 0.878 18 C -0.097 4.097 19 C -0.063 4.063 20 C 0.170 3.830 21 N -0.536 5.536 22 C 0.282 3.718 23 N -0.538 5.538 24 C 0.152 3.848 25 C -0.178 4.178 26 C -0.056 4.056 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.269 0.731 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.222 0.778 38 H 0.192 0.808 39 H 0.087 0.913 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 4.807 15.231 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C 0.170 3.830 4 H 0.028 0.972 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.190 1.190 13 O -0.276 6.276 14 C 0.297 3.703 15 O -0.430 6.430 16 C -0.094 4.094 17 H 0.140 0.860 18 C -0.135 4.135 19 C -0.101 4.101 20 C 0.026 3.974 21 N -0.250 5.250 22 C -0.006 4.006 23 N -0.252 5.252 24 C -0.015 4.015 25 C -0.182 4.182 26 C -0.095 4.095 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.238 0.762 38 H 0.209 0.791 39 H 0.105 0.895 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.535 5.119 15.546 18.942 hybrid contribution 1.204 -0.589 -1.397 1.936 sum -8.331 4.529 14.149 17.033 Atomic orbital electron populations 1.21724 0.95936 1.00734 1.00428 1.21760 0.94804 0.97937 1.01405 1.20332 0.94435 0.89260 0.78952 0.97175 1.21307 0.90698 1.44624 1.02178 0.91546 1.25766 1.03791 0.94423 0.94028 1.70105 1.38010 1.44414 1.02759 0.85329 0.78250 0.79258 0.77416 1.19152 1.20675 1.18967 1.86456 1.36039 1.62951 1.42181 1.24110 0.79467 0.76132 0.90609 1.90610 1.55798 1.59013 1.37574 1.21131 0.99951 0.98638 0.89680 0.85966 1.21432 0.93800 0.99704 0.98541 1.20405 1.05078 0.97643 0.86945 1.21620 0.89347 0.91335 0.95059 1.68444 1.22293 1.34424 0.99868 1.25477 0.91683 0.87772 0.95632 1.68502 1.10309 1.12913 1.33493 1.23706 0.92666 0.98447 0.86706 1.21076 1.01406 0.97974 0.97716 1.20186 1.02365 0.96866 0.90034 0.93707 0.94736 0.91958 0.91857 0.92591 0.92167 0.89638 0.91053 0.87411 0.87570 0.76210 0.79112 0.89456 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.57 71.98 0.62 -4.74 16 2 C -0.12 -5.72 5.54 30.59 0.17 -5.56 16 3 C 0.22 11.64 2.11 29.85 0.06 11.70 16 4 H 0.01 0.62 7.10 -2.39 -0.02 0.61 16 5 C -0.55 -30.34 8.82 25.60 0.23 -30.11 16 6 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 7 C 0.02 1.10 5.16 84.65 0.44 1.53 16 8 N -0.92 -52.21 12.16 21.45 0.26 -51.95 16 9 Si 0.97 42.12 29.55 68.60 2.03 44.15 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 O -0.36 -15.93 9.75 -51.36 -0.50 -16.43 16 14 C 0.45 17.03 5.70 71.24 0.41 17.44 16 15 O -0.54 -23.43 12.99 21.95 0.29 -23.14 16 16 C -0.07 -1.91 2.65 -11.49 -0.03 -1.94 16 17 H 0.12 2.78 8.11 -2.39 -0.02 2.76 16 18 C -0.10 -2.12 4.71 30.61 0.14 -1.98 16 19 C -0.06 -1.12 5.95 29.67 0.18 -0.94 16 20 C 0.17 3.53 6.63 42.20 0.28 3.81 16 21 N -0.54 -11.38 10.32 -188.72 -1.95 -13.33 16 22 C 0.28 5.33 12.29 180.93 2.22 7.55 16 23 N -0.54 -11.11 10.44 -199.92 -2.09 -13.20 16 24 C 0.15 2.87 10.94 84.83 0.93 3.80 16 25 C -0.18 -3.58 5.74 -19.90 -0.11 -3.70 16 26 C -0.06 -1.21 4.98 29.68 0.15 -1.06 16 27 H 0.04 1.70 6.05 -2.39 -0.01 1.69 16 28 H 0.03 1.53 7.80 -2.39 -0.02 1.51 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.06 3.31 6.80 -2.39 -0.02 3.29 16 31 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.09 1.99 7.81 -2.38 -0.02 1.98 16 34 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.22 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.19 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.09 1.91 8.11 -2.39 -0.02 1.89 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -67.07 329.14 4.75 -62.32 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.04 Total: 15.77 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.67 Total: -4.19 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -3.77 Total: -78.48 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.22 Total: -39.57 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -67.07 4.75 -62.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.015 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds