Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47108 * 2 1 4 4 H 1.09005 * 109.47057 * 305.00533 * 3 2 1 5 5 C 1.50696 * 109.47712 * 185.00268 * 3 2 1 6 6 H 1.07999 * 120.00319 * 240.00495 * 5 3 2 7 7 C 1.37885 * 119.99717 * 59.99878 * 5 3 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 O 1.45200 * 109.46973 * 65.00110 * 3 2 1 14 14 C 1.34228 * 117.00576 * 270.00124 * 13 3 2 15 15 O 1.20832 * 119.99866 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00203 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.63404 * 299.59935 * 16 14 13 18 18 C 1.53307 * 109.63108 * 179.00561 * 16 14 13 19 19 C 1.52822 * 108.51527 * 170.52678 * 18 16 14 20 20 C 1.50443 * 110.43880 * 51.07535 * 19 18 16 21 21 N 1.32888 * 118.53104 * 162.52467 * 20 19 18 22 22 C 1.31606 * 121.06371 * 179.44440 * 21 20 19 23 23 N 1.31810 * 121.66739 * 359.97438 * 22 21 20 24 24 C 1.32196 * 120.64477 * 0.17754 * 23 22 21 25 25 C 1.37769 * 122.57979 * 342.19570 * 20 19 18 26 26 C 1.50345 * 122.80145 * 0.70892 * 25 20 19 27 27 H 1.08997 * 109.46748 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46964 * 299.99490 * 1 2 3 29 29 H 1.08992 * 109.47475 * 59.99643 * 1 2 3 30 30 H 1.09006 * 109.46964 * 240.00510 * 2 1 3 31 31 H 1.08997 * 109.47880 * 120.00136 * 2 1 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.63272 * 290.23656 * 18 16 14 34 34 H 1.08997 * 109.63122 * 50.82047 * 18 16 14 35 35 H 1.09004 * 109.30516 * 290.78124 * 19 18 16 36 36 H 1.08996 * 109.15173 * 171.27091 * 19 18 16 37 37 H 1.07997 * 119.16322 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.36288 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.30148 * 222.12910 * 26 25 20 40 40 H 1.09001 * 109.14545 * 102.63344 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 5.4539 0.8798 -1.3361 9 14 3.0961 0.1102 -2.5708 10 1 2.8744 -1.3259 -2.2647 11 1 1.7879 0.8095 -2.6394 12 1 3.7939 0.2363 -3.8756 13 8 1.6559 2.0916 1.2407 14 6 0.4727 2.7254 1.2561 15 8 -0.2190 2.7378 0.2655 16 6 0.0076 3.4224 2.5086 17 1 -0.0787 2.6994 3.3196 18 6 -1.3524 4.0833 2.2554 19 6 -1.9091 4.5751 3.5909 20 6 -0.8828 5.4032 4.3150 21 7 -1.2879 6.1952 5.3022 22 6 -0.4312 6.9328 5.9761 23 7 0.8584 6.9184 5.7038 24 6 1.3337 6.1570 4.7333 25 6 0.4576 5.3664 3.9986 26 6 1.0104 4.5092 2.8940 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8935 -0.5138 0.8899 32 1 5.8770 0.4814 -2.1127 33 1 -1.2287 4.9275 1.5771 34 1 -2.0371 3.3564 1.8187 35 1 -2.1795 3.7171 4.2065 36 1 -2.7964 5.1808 3.4072 37 1 -0.7940 7.5652 6.7728 38 1 2.3912 6.1491 4.5138 39 1 1.9366 4.0424 3.2294 40 1 1.2161 5.1345 2.0252 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842771870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = -71.476807 kcal Electronic energy + Delta-G solvation = -23237.317335 eV Core-core repulsion = 19822.947475 eV Total energy + Delta-G solvation = -3414.369860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42294 -41.49318 -38.50954 -37.30557 -35.52875 -35.05171 -33.90659 -32.49483 -31.46575 -29.74213 -26.60108 -25.57516 -24.68713 -24.01003 -23.22572 -21.83797 -20.76604 -19.32604 -18.69066 -18.34308 -17.91060 -17.67381 -16.91604 -16.68522 -16.02223 -15.53653 -15.24900 -15.13492 -14.89940 -14.75029 -14.54960 -14.20269 -14.01482 -13.88858 -13.50301 -13.28882 -13.13787 -13.07191 -12.86087 -12.54857 -12.23981 -12.03011 -12.00970 -11.87935 -11.52600 -11.49330 -11.38184 -11.16399 -11.04760 -10.72046 -10.22736 -10.19549 -8.43629 -6.51538 -0.09589 0.02845 1.23409 1.30538 1.31338 1.40401 1.93113 2.19932 2.73854 2.89069 3.01429 3.25774 3.43182 3.45799 3.58499 3.74908 3.91385 4.10723 4.14494 4.20251 4.24350 4.26636 4.38776 4.43260 4.53185 4.61301 4.68202 4.77633 4.88985 4.96238 4.97737 5.04909 5.06295 5.07596 5.20002 5.35120 5.38951 5.46083 5.71997 5.97652 6.18252 6.53235 6.93421 7.08332 7.14088 8.72098 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026910 B = 0.003999 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.237450 B = 7000.211005 C = 7780.596329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.148 4.148 3 C 0.201 3.799 4 H 0.030 0.970 5 C -0.537 4.537 6 H 0.049 0.951 7 C 0.031 3.969 8 N -0.931 5.931 9 Si 0.935 3.065 10 H -0.253 1.253 11 H -0.254 1.254 12 H -0.287 1.287 13 O -0.351 6.351 14 C 0.455 3.545 15 O -0.533 6.533 16 C -0.074 4.074 17 H 0.130 0.870 18 C -0.096 4.096 19 C -0.063 4.063 20 C 0.171 3.829 21 N -0.535 5.535 22 C 0.282 3.718 23 N -0.539 5.539 24 C 0.149 3.851 25 C -0.178 4.178 26 C -0.060 4.060 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.274 0.726 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.222 0.778 38 H 0.187 0.813 39 H 0.099 0.901 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.137 6.747 11.350 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.186 4.186 3 C 0.147 3.853 4 H 0.048 0.952 5 C -0.575 4.575 6 H 0.067 0.933 7 C -0.169 4.169 8 N -0.569 5.569 9 Si 0.761 3.239 10 H -0.178 1.178 11 H -0.178 1.178 12 H -0.213 1.213 13 O -0.267 6.267 14 C 0.299 3.701 15 O -0.423 6.423 16 C -0.093 4.093 17 H 0.148 0.852 18 C -0.134 4.134 19 C -0.100 4.100 20 C 0.027 3.973 21 N -0.249 5.249 22 C -0.005 4.005 23 N -0.253 5.253 24 C -0.018 4.018 25 C -0.182 4.182 26 C -0.099 4.099 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.238 0.762 38 H 0.204 0.796 39 H 0.117 0.883 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.494 7.272 11.684 20.723 hybrid contribution 0.734 -0.792 -1.530 1.873 sum -14.759 6.480 10.154 19.051 Atomic orbital electron populations 1.21810 0.94353 1.01994 1.01603 1.22278 0.96667 0.97571 1.02041 1.20619 0.93802 0.89734 0.81152 0.95208 1.21005 0.89868 1.39592 1.07047 0.93313 1.25534 0.95988 0.95670 0.99675 1.69960 1.10360 1.45597 1.30976 0.86045 0.79404 0.80270 0.78191 1.17792 1.17841 1.21336 1.86493 1.36381 1.62912 1.40866 1.24140 0.79216 0.75937 0.90787 1.90602 1.55691 1.59117 1.36876 1.21153 0.97161 0.97790 0.93168 0.85245 1.21475 0.93835 1.01079 0.97052 1.20456 0.96007 0.99252 0.94299 1.21689 0.92757 0.91897 0.90923 1.68455 1.40543 1.08010 1.07881 1.25487 0.84765 0.93645 0.96646 1.68497 1.17427 1.21739 1.17661 1.23673 1.01778 0.88167 0.88191 1.21064 0.95329 1.01348 1.00449 1.20204 0.98470 0.94822 0.96362 0.90903 0.92955 0.93449 0.92559 0.90871 0.91660 0.91243 0.88818 0.87115 0.87351 0.76158 0.79612 0.88256 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 8.57 71.98 0.62 -4.27 16 2 C -0.15 -6.22 5.15 30.59 0.16 -6.06 16 3 C 0.20 9.62 1.84 29.85 0.05 9.68 16 4 H 0.03 1.53 6.21 -2.38 -0.01 1.51 16 5 C -0.54 -30.48 9.48 25.60 0.24 -30.24 16 6 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 7 C 0.03 1.76 5.45 84.66 0.46 2.22 16 8 N -0.93 -56.04 13.96 21.45 0.30 -55.74 16 9 Si 0.94 43.28 24.41 68.60 1.67 44.96 16 10 H -0.25 -10.83 6.83 99.48 0.68 -10.15 16 11 H -0.25 -11.41 6.53 99.48 0.65 -10.76 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 O -0.35 -14.65 9.74 -51.40 -0.50 -15.15 16 14 C 0.46 15.57 5.70 71.23 0.41 15.97 16 15 O -0.53 -20.39 12.99 21.95 0.29 -20.11 16 16 C -0.07 -1.72 2.65 -11.50 -0.03 -1.75 16 17 H 0.13 2.52 8.11 -2.39 -0.02 2.50 16 18 C -0.10 -1.86 4.71 30.64 0.14 -1.72 16 19 C -0.06 -0.98 5.96 29.71 0.18 -0.81 16 20 C 0.17 3.44 6.62 42.21 0.28 3.72 16 21 N -0.53 -11.14 10.32 -188.72 -1.95 -13.09 16 22 C 0.28 5.39 12.29 180.94 2.22 7.62 16 23 N -0.54 -11.64 10.44 -199.92 -2.09 -13.73 16 24 C 0.15 3.02 10.94 84.83 0.93 3.95 16 25 C -0.18 -3.66 5.73 -19.90 -0.11 -3.78 16 26 C -0.06 -1.34 4.96 29.68 0.15 -1.19 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.72 6.06 -2.38 -0.01 1.71 16 29 H 0.05 1.73 7.80 -2.39 -0.02 1.71 16 30 H 0.06 2.44 3.22 -2.38 -0.01 2.43 16 31 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 34 H 0.09 1.79 7.80 -2.39 -0.02 1.77 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.22 2.64 8.06 -2.91 -0.02 2.61 16 38 H 0.19 3.00 8.06 -2.91 -0.02 2.97 16 39 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 40 H 0.08 1.96 8.11 -2.39 -0.02 1.95 16 Total: -1.00 -68.84 320.95 4.38 -64.46 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.97 Total: 15.04 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.69 Total: -6.64 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.74 Total: -82.56 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.22 Total: -35.26 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.67 Total: 44.96 kcal Total: -68.84 4.38 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.022 kcal (2) G-P(sol) polarization free energy of solvation -68.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds