Wall clock time and date at job start Tue Mar 31 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46951 * 2 1 4 4 C 1.52996 * 109.47165 * 239.99881 * 2 1 3 5 5 H 1.09003 * 109.46946 * 180.02562 * 4 2 1 6 6 N 1.46498 * 109.47323 * 60.00208 * 4 2 1 7 7 C 1.34773 * 120.00319 * 84.99636 * 6 4 2 8 8 O 1.21280 * 120.00130 * 0.02562 * 7 6 4 9 9 C 1.50695 * 109.47285 * 299.99628 * 4 2 1 10 10 O 1.21283 * 119.99882 * 119.99908 * 9 4 2 11 11 N 1.34783 * 120.00237 * 300.00583 * 9 4 2 12 12 C 1.39237 * 119.99956 * 175.70113 * 11 9 4 13 13 C 1.39482 * 119.83318 * 215.02018 * 12 11 9 14 14 C 1.36369 * 120.16768 * 179.72278 * 13 12 11 15 15 C 1.40870 * 119.82739 * 0.57118 * 14 13 12 16 16 C 1.41157 * 120.16621 * 179.67897 * 15 14 13 17 17 H 1.07994 * 120.00340 * 214.80221 * 16 15 14 18 18 C 1.39906 * 119.99754 * 34.79386 * 16 15 14 19 19 N 1.30873 * 119.99970 * 355.57752 * 18 16 15 20 20 Si 1.86798 * 119.99767 * 175.57031 * 18 16 15 21 21 H 1.48495 * 109.47049 * 60.01046 * 20 18 16 22 22 H 1.48500 * 109.46808 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47511 * 300.00599 * 20 18 16 24 24 C 1.40874 * 119.67326 * 359.70527 * 15 14 13 25 25 C 1.36369 * 119.82523 * 359.97438 * 24 15 14 26 26 H 1.09004 * 109.47314 * 60.00417 * 1 2 3 27 27 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47121 * 300.00188 * 1 2 3 29 29 H 1.09001 * 109.46818 * 119.99602 * 2 1 3 30 30 H 1.09000 * 109.47361 * 59.99959 * 3 2 1 31 31 H 1.09003 * 109.47040 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47035 * 299.99470 * 3 2 1 33 33 H 0.96998 * 119.99886 * 265.00232 * 6 4 2 34 34 H 1.07998 * 120.00225 * 180.02562 * 7 6 4 35 35 H 0.96996 * 119.99408 * 355.70545 * 11 9 4 36 36 H 1.08000 * 119.91393 * 359.97438 * 13 12 11 37 37 H 1.07999 * 120.08903 * 180.25117 * 14 13 12 38 38 H 0.96997 * 119.99479 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.08479 * 179.97438 * 24 15 14 40 40 H 1.08005 * 119.91027 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1300 -0.7216 -1.2489 6 7 1.5517 -0.0307 -2.4454 7 6 2.2285 1.0261 -2.9369 8 8 3.2420 1.4052 -2.3892 9 6 1.5378 -2.1421 -1.2492 10 8 0.8405 -2.5388 -2.1588 11 7 1.8633 -2.9719 -0.2382 12 6 1.3272 -4.2561 -0.1916 13 6 1.0186 -4.8349 1.0394 14 6 0.4880 -6.0900 1.0927 15 6 0.2630 -6.8068 -0.0990 16 6 -0.2795 -8.1091 -0.0517 17 1 0.0349 -8.8516 -0.7701 18 6 -1.2246 -8.4381 0.9261 19 7 -1.5414 -7.5664 1.8494 20 14 -2.0342 -10.1214 0.9135 21 1 -0.9940 -11.1720 1.0524 22 1 -2.9909 -10.2190 2.0451 23 1 -2.7617 -10.3114 -0.3670 24 6 0.5827 -6.2178 -1.3381 25 6 1.1066 -4.9593 -1.3758 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.7413 -0.3340 -2.8836 34 1 1.8683 1.5354 -3.8185 35 1 2.4710 -2.6745 0.4568 36 1 1.1965 -4.2861 1.9523 37 1 0.2458 -6.5354 2.0463 38 1 -2.1969 -7.7944 2.5270 39 1 0.4133 -6.7615 -2.2558 40 1 1.3517 -4.5062 -2.3250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858161516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:38 Heat of formation + Delta-G solvation = -55.465711 kcal Electronic energy + Delta-G solvation = -22919.888706 eV Core-core repulsion = 19506.213139 eV Total energy + Delta-G solvation = -3413.675567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63176 -39.09168 -37.40348 -35.95922 -34.60430 -33.19539 -32.79632 -29.67163 -29.24257 -27.62020 -27.18663 -24.82831 -22.30669 -21.84057 -21.02992 -20.28585 -19.49782 -18.38381 -17.34637 -17.01436 -16.19225 -15.85518 -15.57309 -15.15498 -14.72539 -14.17048 -13.95910 -13.88458 -13.63215 -13.33455 -12.82208 -12.71214 -12.31024 -12.18360 -12.04866 -11.76726 -11.47792 -11.41925 -11.18830 -11.08901 -11.03618 -10.94957 -10.76233 -10.08484 -10.04341 -9.55479 -9.50868 -9.30181 -9.07436 -8.91664 -7.59808 -6.92492 -6.65879 -4.38761 2.44190 2.59957 2.93974 3.04677 3.04850 3.07058 3.09644 3.29040 3.71156 3.95015 4.63851 4.66012 4.72558 4.84341 4.93827 5.12582 5.40931 5.52344 5.60462 5.62457 5.80873 5.88428 5.94832 6.14410 6.19390 6.26443 6.29301 6.38856 6.67872 6.85129 7.01965 7.14759 7.24348 7.36656 7.58841 7.66962 7.79027 8.00853 8.05250 8.18841 8.26651 8.54635 8.63776 8.88496 8.94682 10.25049 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036628 B = 0.003308 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.258986 B = 8463.339209 C = 8786.089964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.136 4.136 4 C 0.127 3.873 5 H 0.109 0.891 6 N -0.712 5.712 7 C 0.493 3.507 8 O -0.555 6.555 9 C 0.499 3.501 10 O -0.530 6.530 11 N -0.643 5.643 12 C 0.000 4.000 13 C -0.118 4.118 14 C -0.141 4.141 15 C 0.102 3.898 16 C -0.461 4.461 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.811 5.811 20 Si 0.916 3.084 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.207 4.207 25 C -0.084 4.084 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.412 0.588 34 H 0.133 0.867 35 H 0.397 0.603 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.279 0.721 39 H 0.096 0.904 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.673 13.234 -2.266 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.193 4.193 4 C 0.017 3.983 5 H 0.127 0.873 6 N -0.367 5.367 7 C 0.261 3.739 8 O -0.431 6.431 9 C 0.285 3.715 10 O -0.407 6.407 11 N -0.286 5.286 12 C -0.092 4.092 13 C -0.138 4.138 14 C -0.161 4.161 15 C 0.099 3.901 16 C -0.492 4.492 17 H 0.094 0.906 18 C -0.145 4.145 19 N -0.438 5.438 20 Si 0.741 3.259 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.227 4.227 25 C -0.104 4.104 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.249 0.751 34 H 0.148 0.852 35 H 0.231 0.769 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.741 13.275 -2.331 13.987 hybrid contribution -0.680 -0.721 0.190 1.009 sum 3.061 12.553 -2.141 13.097 Atomic orbital electron populations 1.21847 0.94369 1.02574 1.01863 1.21483 0.96946 0.97354 0.96208 1.21864 1.01667 0.94560 1.01207 1.20878 1.00869 0.89587 0.86918 0.87280 1.46295 1.29840 1.31919 1.28682 1.22578 0.83855 0.79950 0.87534 1.90712 1.25641 1.65270 1.61507 1.20416 0.81208 0.86711 0.83207 1.90679 1.38132 1.76536 1.35309 1.42904 1.46365 1.13097 1.26213 1.17244 1.12443 0.84892 0.94600 1.20310 1.02299 0.97190 0.94047 1.21191 1.00944 0.94186 0.99820 1.17726 0.88615 0.93213 0.90535 1.19486 1.20404 0.96961 1.12347 0.90612 1.25882 0.96356 0.98518 0.93769 1.69750 1.27503 1.34714 1.11826 0.86239 0.79268 0.81776 0.78619 1.19031 1.20411 1.19083 1.20805 1.09355 0.95386 0.97115 1.20379 0.99926 0.94106 0.95973 0.92535 0.92082 0.92372 0.89983 0.93198 0.91778 0.92690 0.75137 0.85161 0.76929 0.89037 0.85018 0.91047 0.88607 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.79 37.16 0.33 -1.38 16 2 C -0.10 -1.08 2.71 -90.62 -0.25 -1.33 16 3 C -0.14 -1.42 7.72 37.16 0.29 -1.13 16 4 C 0.13 1.54 2.41 -69.09 -0.17 1.37 16 5 H 0.11 1.34 7.58 -51.93 -0.39 0.95 16 6 N -0.71 -7.54 4.08 -59.28 -0.24 -7.79 16 7 C 0.49 4.82 11.00 54.05 0.59 5.42 16 8 O -0.56 -7.46 14.30 5.56 0.08 -7.39 16 9 C 0.50 7.92 5.79 -10.98 -0.06 7.86 16 10 O -0.53 -10.19 13.26 5.55 0.07 -10.12 16 11 N -0.64 -10.57 5.17 -9.74 -0.05 -10.62 16 12 C 0.00 0.01 6.31 -83.57 -0.53 -0.52 16 13 C -0.12 -2.60 9.90 -39.79 -0.39 -3.00 16 14 C -0.14 -3.55 8.61 -39.26 -0.34 -3.88 16 15 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 16 C -0.46 -12.12 9.03 -37.85 -0.34 -12.47 16 17 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 18 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 19 N -0.81 -20.73 10.60 55.55 0.59 -20.14 16 20 Si 0.92 18.73 29.56 -169.99 -5.03 13.71 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 25 C -0.08 -1.94 8.61 -39.79 -0.34 -2.29 16 26 H 0.06 0.60 7.60 -51.93 -0.39 0.21 16 27 H 0.06 0.86 7.22 -51.93 -0.37 0.48 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.83 7.67 -51.93 -0.40 0.43 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.73 7.53 -51.93 -0.39 0.34 16 32 H 0.05 0.59 5.78 -51.93 -0.30 0.29 16 33 H 0.41 4.21 7.90 -40.82 -0.32 3.89 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.40 5.18 8.37 -40.82 -0.34 4.84 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.13 3.42 6.13 -52.49 -0.32 3.10 16 38 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 39 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.11 2.43 6.22 -52.48 -0.33 2.10 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -30.47 328.46 -7.13 -37.60 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.23 Total: 12.90 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.28 Total: -13.12 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.30 Total: -38.54 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.15 Total: -17.50 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.47 -7.13 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858161516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.865 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds