Wall clock time and date at job start Tue Mar 31 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46951 * 2 1 4 4 C 1.52996 * 109.47165 * 239.99881 * 2 1 3 5 5 H 1.09003 * 109.46946 * 180.02562 * 4 2 1 6 6 N 1.46498 * 109.47323 * 60.00208 * 4 2 1 7 7 C 1.34773 * 120.00319 * 84.99636 * 6 4 2 8 8 O 1.21280 * 120.00130 * 0.02562 * 7 6 4 9 9 C 1.50695 * 109.47285 * 299.99628 * 4 2 1 10 10 O 1.21283 * 119.99882 * 119.99908 * 9 4 2 11 11 N 1.34783 * 120.00237 * 300.00583 * 9 4 2 12 12 C 1.39237 * 119.99956 * 175.70113 * 11 9 4 13 13 C 1.39482 * 119.83318 * 215.02018 * 12 11 9 14 14 C 1.36369 * 120.16768 * 179.72278 * 13 12 11 15 15 C 1.40870 * 119.82739 * 0.57118 * 14 13 12 16 16 C 1.41157 * 120.16621 * 179.67897 * 15 14 13 17 17 H 1.07994 * 120.00340 * 214.80221 * 16 15 14 18 18 C 1.39906 * 119.99754 * 34.79386 * 16 15 14 19 19 N 1.30873 * 119.99970 * 355.57752 * 18 16 15 20 20 Si 1.86798 * 119.99767 * 175.57031 * 18 16 15 21 21 H 1.48495 * 109.47049 * 60.01046 * 20 18 16 22 22 H 1.48500 * 109.46808 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47511 * 300.00599 * 20 18 16 24 24 C 1.40874 * 119.67326 * 359.70527 * 15 14 13 25 25 C 1.36369 * 119.82523 * 359.97438 * 24 15 14 26 26 H 1.09004 * 109.47314 * 60.00417 * 1 2 3 27 27 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47121 * 300.00188 * 1 2 3 29 29 H 1.09001 * 109.46818 * 119.99602 * 2 1 3 30 30 H 1.09000 * 109.47361 * 59.99959 * 3 2 1 31 31 H 1.09003 * 109.47040 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47035 * 299.99470 * 3 2 1 33 33 H 0.96998 * 119.99886 * 265.00232 * 6 4 2 34 34 H 1.07998 * 120.00225 * 180.02562 * 7 6 4 35 35 H 0.96996 * 119.99408 * 355.70545 * 11 9 4 36 36 H 1.08000 * 119.91393 * 359.97438 * 13 12 11 37 37 H 1.07999 * 120.08903 * 180.25117 * 14 13 12 38 38 H 0.96997 * 119.99479 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.08479 * 179.97438 * 24 15 14 40 40 H 1.08005 * 119.91027 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1300 -0.7216 -1.2489 6 7 1.5517 -0.0307 -2.4454 7 6 2.2285 1.0261 -2.9369 8 8 3.2420 1.4052 -2.3892 9 6 1.5378 -2.1421 -1.2492 10 8 0.8405 -2.5388 -2.1588 11 7 1.8633 -2.9719 -0.2382 12 6 1.3272 -4.2561 -0.1916 13 6 1.0186 -4.8349 1.0394 14 6 0.4880 -6.0900 1.0927 15 6 0.2630 -6.8068 -0.0990 16 6 -0.2795 -8.1091 -0.0517 17 1 0.0349 -8.8516 -0.7701 18 6 -1.2246 -8.4381 0.9261 19 7 -1.5414 -7.5664 1.8494 20 14 -2.0342 -10.1214 0.9135 21 1 -0.9940 -11.1720 1.0524 22 1 -2.9909 -10.2190 2.0451 23 1 -2.7617 -10.3114 -0.3670 24 6 0.5827 -6.2178 -1.3381 25 6 1.1066 -4.9593 -1.3758 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.7413 -0.3340 -2.8836 34 1 1.8683 1.5354 -3.8185 35 1 2.4710 -2.6745 0.4568 36 1 1.1965 -4.2861 1.9523 37 1 0.2458 -6.5354 2.0463 38 1 -2.1969 -7.7944 2.5270 39 1 0.4133 -6.7615 -2.2558 40 1 1.3517 -4.5062 -2.3250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858161516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:37 Heat of formation + Delta-G solvation = -75.176885 kcal Electronic energy + Delta-G solvation = -22920.743446 eV Core-core repulsion = 19506.213139 eV Total energy + Delta-G solvation = -3414.530307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82567 -40.28452 -39.02931 -37.01050 -36.22821 -34.75191 -33.88154 -31.50063 -30.96937 -28.86543 -28.06986 -26.54738 -23.62732 -23.04573 -22.68047 -21.74045 -20.52300 -19.54444 -19.19249 -18.31738 -17.41771 -17.04901 -17.00236 -16.54862 -15.95431 -15.71335 -15.25668 -14.96131 -14.85317 -14.51990 -14.46895 -14.11104 -13.90851 -13.60027 -13.30198 -13.23886 -12.90606 -12.87228 -12.77116 -12.48828 -12.36522 -12.05067 -11.81162 -11.76795 -11.39612 -11.21587 -10.90107 -10.81804 -10.61680 -10.04612 -9.46822 -8.74398 -8.50651 -6.33573 0.77442 1.13876 1.39908 1.44332 1.51248 1.69096 1.79363 2.06255 2.24266 2.61048 2.80454 3.55058 3.70119 3.73626 3.93281 4.12995 4.26023 4.39844 4.52338 4.52900 4.62527 4.78519 4.90791 4.93835 5.01268 5.09171 5.13283 5.14265 5.29694 5.32396 5.41122 5.41983 5.44686 5.69388 5.89637 6.00780 6.12682 6.38669 6.56352 6.62410 6.68697 6.96634 6.98832 7.26234 7.29086 8.41670 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036628 B = 0.003308 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.258986 B = 8463.339209 C = 8786.089964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.127 4.127 4 C 0.137 3.863 5 H 0.114 0.886 6 N -0.713 5.713 7 C 0.495 3.505 8 O -0.590 6.590 9 C 0.503 3.497 10 O -0.562 6.562 11 N -0.638 5.638 12 C 0.022 3.978 13 C -0.117 4.117 14 C -0.159 4.159 15 C 0.069 3.931 16 C -0.500 4.500 17 H 0.072 0.928 18 C 0.029 3.971 19 N -0.840 5.840 20 Si 0.987 3.013 21 H -0.259 1.259 22 H -0.268 1.268 23 H -0.265 1.265 24 C -0.221 4.221 25 C -0.095 4.095 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.415 0.585 34 H 0.182 0.818 35 H 0.417 0.583 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.285 0.715 39 H 0.095 0.905 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 14.897 -2.090 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.184 4.184 4 C 0.028 3.972 5 H 0.131 0.869 6 N -0.368 5.368 7 C 0.266 3.734 8 O -0.468 6.468 9 C 0.290 3.710 10 O -0.440 6.440 11 N -0.283 5.283 12 C -0.072 4.072 13 C -0.137 4.137 14 C -0.179 4.179 15 C 0.067 3.933 16 C -0.531 4.531 17 H 0.090 0.910 18 C -0.183 4.183 19 N -0.467 5.467 20 Si 0.808 3.192 21 H -0.183 1.183 22 H -0.192 1.192 23 H -0.190 1.190 24 C -0.241 4.241 25 C -0.115 4.115 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.252 0.748 34 H 0.197 0.803 35 H 0.254 0.746 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.916 14.976 -2.153 15.629 hybrid contribution -0.658 -1.051 0.071 1.242 sum 3.259 13.925 -2.082 14.452 Atomic orbital electron populations 1.21807 0.94701 1.00872 1.02874 1.21489 0.96486 0.97754 0.95803 1.21764 1.00993 0.93971 1.01679 1.20776 1.00888 0.87008 0.88544 0.86876 1.46417 1.30045 1.32083 1.28266 1.23456 0.82881 0.79120 0.87986 1.90709 1.27298 1.66133 1.62706 1.21090 0.80050 0.87927 0.81892 1.90669 1.39445 1.77454 1.36478 1.42826 1.46700 1.11471 1.27306 1.17272 1.09979 0.86323 0.93614 1.20555 1.01051 0.96358 0.95699 1.21166 1.02255 0.95577 0.98906 1.18024 0.89851 0.94032 0.91423 1.19718 1.22204 0.97410 1.13739 0.90977 1.26707 0.96299 1.02326 0.92955 1.69815 1.28089 1.36460 1.12379 0.85176 0.78341 0.76953 0.78740 1.18323 1.19238 1.19011 1.20928 1.10074 0.96270 0.96860 1.20499 1.00289 0.93763 0.96952 0.91909 0.94962 0.91129 0.88921 0.91929 0.92648 0.93005 0.74798 0.80256 0.74603 0.85753 0.86410 0.90464 0.88676 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.79 71.98 0.63 -2.37 16 2 C -0.10 -1.82 2.71 -10.79 -0.03 -1.85 16 3 C -0.13 -2.30 7.72 71.98 0.56 -1.74 16 4 C 0.14 3.04 2.41 44.24 0.11 3.14 16 5 H 0.11 2.51 7.58 -2.39 -0.02 2.49 16 6 N -0.71 -13.46 4.08 -459.84 -1.88 -15.33 16 7 C 0.49 8.27 11.00 129.79 1.43 9.69 16 8 O -0.59 -14.48 14.30 -3.03 -0.04 -14.53 16 9 C 0.50 15.20 5.79 87.65 0.51 15.71 16 10 O -0.56 -21.16 13.26 -3.04 -0.04 -21.20 16 11 N -0.64 -19.85 5.17 -303.11 -1.57 -21.41 16 12 C 0.02 0.90 6.31 38.56 0.24 1.14 16 13 C -0.12 -5.06 9.90 22.13 0.22 -4.84 16 14 C -0.16 -8.14 8.61 22.48 0.19 -7.95 16 15 C 0.07 3.76 5.55 -21.27 -0.12 3.64 16 16 C -0.50 -27.28 9.03 23.39 0.21 -27.07 16 17 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 18 C 0.03 1.49 5.42 85.24 0.46 1.95 16 19 N -0.84 -43.82 10.60 21.82 0.23 -43.59 16 20 Si 0.99 38.80 29.56 68.60 2.03 40.82 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 23 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 24 C -0.22 -11.32 9.74 22.48 0.22 -11.10 16 25 C -0.10 -4.44 8.61 22.13 0.19 -4.25 16 26 H 0.06 1.20 7.60 -2.38 -0.02 1.19 16 27 H 0.03 0.85 7.22 -2.39 -0.02 0.83 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.59 7.67 -2.39 -0.02 1.57 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.13 7.53 -2.39 -0.02 1.11 16 32 H 0.05 0.98 5.78 -2.39 -0.01 0.96 16 33 H 0.41 7.64 7.90 -92.71 -0.73 6.91 16 34 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.42 9.78 8.37 -92.71 -0.78 9.00 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.12 6.31 6.13 -2.91 -0.02 6.30 16 38 H 0.28 13.54 8.30 -92.71 -0.77 12.77 16 39 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 40 H 0.11 5.00 6.22 -2.91 -0.02 4.99 16 Total: -1.00 -67.71 328.46 3.13 -64.58 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.43 Total: 36.56 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 4.82 Total: -25.91 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -3.21 Total: -80.34 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.08 Total: -35.72 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.82 kcal Total: -67.71 3.13 -64.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858161516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.596 kcal (2) G-P(sol) polarization free energy of solvation -67.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds