Wall clock time and date at job start Tue Mar 31 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47025 * 2 1 4 4 C 1.53005 * 109.47152 * 240.00081 * 2 1 3 5 5 H 1.08998 * 109.47253 * 177.49139 * 4 2 1 6 6 N 1.46496 * 109.47144 * 57.48566 * 4 2 1 7 7 C 1.34774 * 119.99960 * 84.99998 * 6 4 2 8 8 O 1.21286 * 119.99854 * 0.02562 * 7 6 4 9 9 C 1.50699 * 109.46793 * 297.48791 * 4 2 1 10 10 O 1.21291 * 119.99924 * 100.78725 * 9 4 2 11 11 N 1.34774 * 120.00421 * 280.78177 * 9 4 2 12 12 C 1.39933 * 120.00348 * 175.41375 * 11 9 4 13 13 C 1.39290 * 119.94665 * 327.47116 * 12 11 9 14 14 C 1.38491 * 120.42728 * 179.76434 * 13 12 11 15 15 C 1.37686 * 120.32149 * 0.51466 * 14 13 12 16 16 C 1.40738 * 119.88213 * 359.74247 * 15 14 13 17 17 C 1.41407 * 120.20721 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00350 * 207.10814 * 17 16 15 19 19 C 1.39938 * 120.00056 * 27.10502 * 17 16 15 20 20 N 1.30831 * 119.99670 * 13.65217 * 19 17 16 21 21 Si 1.86795 * 120.00029 * 193.65026 * 19 17 16 22 22 H 1.48501 * 109.47033 * 60.00380 * 21 19 17 23 23 H 1.48507 * 109.47047 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47312 * 300.00269 * 21 19 17 25 25 C 1.38243 * 119.94832 * 147.75201 * 12 11 9 26 26 H 1.09004 * 109.47602 * 59.99990 * 1 2 3 27 27 H 1.09003 * 109.47338 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47073 * 299.99879 * 1 2 3 29 29 H 1.08997 * 109.46998 * 119.99793 * 2 1 3 30 30 H 1.08994 * 109.47367 * 67.20681 * 3 2 1 31 31 H 1.09005 * 109.47247 * 187.20747 * 3 2 1 32 32 H 1.08999 * 109.46894 * 307.20146 * 3 2 1 33 33 H 0.96998 * 120.00102 * 265.00072 * 6 4 2 34 34 H 1.07994 * 120.00321 * 179.97438 * 7 6 4 35 35 H 0.97005 * 119.99509 * 355.41681 * 11 9 4 36 36 H 1.08000 * 119.78688 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.83817 * 180.26337 * 14 13 12 38 38 H 1.07995 * 120.05163 * 179.76681 * 15 14 13 39 39 H 0.96997 * 119.99925 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.16082 * 359.94955 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 3.1290 -0.6825 -1.2721 6 7 1.5028 -0.0665 -2.4447 7 6 2.1310 1.0063 -2.9652 8 8 3.1413 1.4293 -2.4442 9 6 1.5891 -2.1589 -1.2185 10 8 0.6350 -2.5095 -1.8802 11 7 2.2461 -3.0551 -0.4559 12 6 1.7710 -4.3671 -0.3518 13 6 0.4020 -4.6176 -0.4096 14 6 -0.0788 -5.9127 -0.3125 15 6 0.7915 -6.9667 -0.1471 16 6 2.1770 -6.7284 -0.0817 17 6 3.0770 -7.8058 0.0875 18 1 4.0332 -7.6413 0.5620 19 6 2.7289 -9.0852 -0.3598 20 7 1.7077 -9.2421 -1.1625 21 14 3.7221 -10.5690 0.1891 22 1 3.6696 -10.6798 1.6690 23 1 3.1535 -11.7981 -0.4203 24 1 5.1329 -10.4086 -0.2456 25 6 2.6606 -5.4122 -0.1860 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7857 1.9178 0.9473 31 1 3.1223 1.4452 -0.1289 32 1 1.5752 1.9921 -0.8186 33 1 0.6951 -0.4051 -2.8615 34 1 1.7353 1.4887 -3.8466 35 1 3.0484 -2.7905 0.0210 36 1 -0.2887 -3.7969 -0.5351 37 1 -1.1419 -6.0964 -0.3628 38 1 0.4115 -7.9745 -0.0682 39 1 1.4665 -10.1289 -1.4728 40 1 3.7220 -5.2187 -0.1374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861929736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:40 Heat of formation + Delta-G solvation = -59.162762 kcal Electronic energy + Delta-G solvation = -22887.041521 eV Core-core repulsion = 19473.205638 eV Total energy + Delta-G solvation = -3413.835883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66444 -39.10302 -37.36344 -35.95229 -34.55824 -33.21843 -33.00360 -29.86989 -29.04266 -27.22675 -27.03267 -25.26590 -22.44518 -21.87163 -21.03868 -20.23283 -19.56561 -18.42794 -17.71456 -16.52443 -16.04719 -15.85287 -15.50410 -15.01339 -14.91866 -14.39066 -14.06804 -13.85950 -13.67903 -13.31244 -12.92698 -12.87740 -12.34783 -12.27021 -12.10983 -11.72132 -11.49814 -11.24783 -11.17899 -11.12556 -11.01056 -10.94425 -10.52432 -10.26160 -10.05094 -9.65890 -9.54939 -9.31561 -9.14289 -8.94337 -7.49636 -6.98046 -6.72504 -4.40483 2.40965 2.58018 2.79684 2.95386 3.05976 3.08421 3.15568 3.32457 3.61854 3.92773 4.61103 4.65613 4.68496 4.81819 4.90893 5.09563 5.36365 5.49708 5.60094 5.64016 5.78829 5.86324 5.93107 6.15793 6.21677 6.25848 6.29295 6.48310 6.65371 6.88151 6.93486 7.00737 7.22285 7.34033 7.53359 7.59159 7.90059 7.99552 8.03303 8.08299 8.25613 8.46747 8.62546 8.86561 8.92555 10.20593 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.003338 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.661989 B = 8387.234910 C = 8625.571601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.135 4.135 4 C 0.127 3.873 5 H 0.107 0.893 6 N -0.714 5.714 7 C 0.492 3.508 8 O -0.554 6.554 9 C 0.506 3.494 10 O -0.519 6.519 11 N -0.659 5.659 12 C 0.150 3.850 13 C -0.225 4.225 14 C -0.097 4.097 15 C -0.163 4.163 16 C 0.122 3.878 17 C -0.466 4.466 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.798 5.798 21 Si 0.910 3.090 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.242 4.242 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.412 0.588 34 H 0.133 0.867 35 H 0.402 0.598 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.281 0.719 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 14.694 0.335 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.193 4.193 4 C 0.018 3.982 5 H 0.125 0.875 6 N -0.370 5.370 7 C 0.261 3.739 8 O -0.429 6.429 9 C 0.291 3.709 10 O -0.395 6.395 11 N -0.302 5.302 12 C 0.058 3.942 13 C -0.246 4.246 14 C -0.116 4.116 15 C -0.183 4.183 16 C 0.119 3.881 17 C -0.496 4.496 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.424 5.424 21 Si 0.735 3.265 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.263 4.263 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.249 0.751 34 H 0.149 0.851 35 H 0.236 0.764 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.092 0.908 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.213 14.611 0.069 14.661 hybrid contribution 0.432 -0.844 0.082 0.952 sum -0.781 13.766 0.150 13.789 Atomic orbital electron populations 1.21838 0.94318 1.02605 1.01782 1.21451 0.97043 0.97299 0.96117 1.21858 1.02048 0.94402 1.00959 1.20901 1.00617 0.89539 0.87186 0.87481 1.46333 1.30551 1.31366 1.28756 1.22606 0.84186 0.79776 0.87363 1.90711 1.25610 1.63871 1.62735 1.20460 0.83843 0.86962 0.79600 1.90707 1.27368 1.79694 1.41694 1.43420 1.29106 1.10147 1.47552 1.17436 0.93128 0.81279 1.02349 1.20321 0.92698 0.96601 1.14963 1.20603 0.97725 0.92766 1.00509 1.21409 0.93068 0.98146 1.05658 1.17367 0.92383 0.90771 0.87530 1.19489 1.02859 0.92155 1.35068 0.90533 1.25882 0.94996 1.00522 0.92797 1.69803 1.24193 1.25030 1.23351 0.86337 0.80425 0.79718 0.80022 1.18862 1.20360 1.19080 1.20729 0.96468 0.92433 1.16718 0.92446 0.92050 0.92509 0.89893 0.93157 0.91449 0.92873 0.75081 0.85088 0.76406 0.87938 0.89021 0.86208 0.90847 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.79 37.16 0.33 -1.29 16 2 C -0.10 -1.07 2.76 -90.62 -0.25 -1.32 16 3 C -0.14 -1.40 7.65 37.16 0.28 -1.11 16 4 C 0.13 1.53 2.38 -69.08 -0.16 1.37 16 5 H 0.11 1.30 7.58 -51.93 -0.39 0.91 16 6 N -0.71 -7.46 4.10 -59.27 -0.24 -7.71 16 7 C 0.49 4.77 11.18 54.05 0.60 5.38 16 8 O -0.55 -7.40 14.16 5.55 0.08 -7.32 16 9 C 0.51 8.03 5.78 -10.99 -0.06 7.97 16 10 O -0.52 -9.86 13.26 5.55 0.07 -9.78 16 11 N -0.66 -11.13 5.34 -9.91 -0.05 -11.18 16 12 C 0.15 3.26 6.29 -83.77 -0.53 2.74 16 13 C -0.22 -5.16 8.67 -39.10 -0.34 -5.49 16 14 C -0.10 -2.31 10.02 -39.69 -0.40 -2.70 16 15 C -0.16 -4.22 8.67 -38.84 -0.34 -4.55 16 16 C 0.12 3.21 5.56 -106.85 -0.59 2.61 16 17 C -0.47 -12.14 9.06 -37.74 -0.34 -12.48 16 18 H 0.08 1.90 7.88 -52.48 -0.41 1.49 16 19 C 0.08 1.87 5.21 -17.34 -0.09 1.78 16 20 N -0.80 -20.60 10.89 55.55 0.60 -20.00 16 21 Si 0.91 18.49 29.58 -169.99 -5.03 13.46 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.24 -5.72 9.70 -38.69 -0.38 -6.10 16 26 H 0.06 0.58 7.54 -51.93 -0.39 0.19 16 27 H 0.06 0.81 7.11 -51.93 -0.37 0.44 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.77 7.24 -51.93 -0.38 0.40 16 32 H 0.05 0.56 6.35 -51.93 -0.33 0.23 16 33 H 0.41 4.12 7.84 -40.82 -0.32 3.80 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.40 5.45 8.81 -40.82 -0.36 5.09 16 36 H 0.10 2.28 6.31 -52.49 -0.33 1.95 16 37 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 38 H 0.12 3.19 6.19 -52.49 -0.33 2.86 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 330.09 15.07 4.97 4.97 Total: -1.00 -30.82 330.09 -7.14 -37.96 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.28 Total: 12.80 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -2.26 Total: -13.22 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.31 Total: -38.88 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.15 Total: -17.10 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.82 -7.14 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861929736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.207 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds