Wall clock time and date at job start Tue Mar 31 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47025 * 2 1 4 4 C 1.53005 * 109.47152 * 240.00081 * 2 1 3 5 5 H 1.08998 * 109.47253 * 177.49139 * 4 2 1 6 6 N 1.46496 * 109.47144 * 57.48566 * 4 2 1 7 7 C 1.34774 * 119.99960 * 84.99998 * 6 4 2 8 8 O 1.21286 * 119.99854 * 0.02562 * 7 6 4 9 9 C 1.50699 * 109.46793 * 297.48791 * 4 2 1 10 10 O 1.21291 * 119.99924 * 100.78725 * 9 4 2 11 11 N 1.34774 * 120.00421 * 280.78177 * 9 4 2 12 12 C 1.39933 * 120.00348 * 175.41375 * 11 9 4 13 13 C 1.39290 * 119.94665 * 327.47116 * 12 11 9 14 14 C 1.38491 * 120.42728 * 179.76434 * 13 12 11 15 15 C 1.37686 * 120.32149 * 0.51466 * 14 13 12 16 16 C 1.40738 * 119.88213 * 359.74247 * 15 14 13 17 17 C 1.41407 * 120.20721 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00350 * 207.10814 * 17 16 15 19 19 C 1.39938 * 120.00056 * 27.10502 * 17 16 15 20 20 N 1.30831 * 119.99670 * 13.65217 * 19 17 16 21 21 Si 1.86795 * 120.00029 * 193.65026 * 19 17 16 22 22 H 1.48501 * 109.47033 * 60.00380 * 21 19 17 23 23 H 1.48507 * 109.47047 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47312 * 300.00269 * 21 19 17 25 25 C 1.38243 * 119.94832 * 147.75201 * 12 11 9 26 26 H 1.09004 * 109.47602 * 59.99990 * 1 2 3 27 27 H 1.09003 * 109.47338 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47073 * 299.99879 * 1 2 3 29 29 H 1.08997 * 109.46998 * 119.99793 * 2 1 3 30 30 H 1.08994 * 109.47367 * 67.20681 * 3 2 1 31 31 H 1.09005 * 109.47247 * 187.20747 * 3 2 1 32 32 H 1.08999 * 109.46894 * 307.20146 * 3 2 1 33 33 H 0.96998 * 120.00102 * 265.00072 * 6 4 2 34 34 H 1.07994 * 120.00321 * 179.97438 * 7 6 4 35 35 H 0.97005 * 119.99509 * 355.41681 * 11 9 4 36 36 H 1.08000 * 119.78688 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.83817 * 180.26337 * 14 13 12 38 38 H 1.07995 * 120.05163 * 179.76681 * 15 14 13 39 39 H 0.96997 * 119.99925 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.16082 * 359.94955 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 3.1290 -0.6825 -1.2721 6 7 1.5028 -0.0665 -2.4447 7 6 2.1310 1.0063 -2.9652 8 8 3.1413 1.4293 -2.4442 9 6 1.5891 -2.1589 -1.2185 10 8 0.6350 -2.5095 -1.8802 11 7 2.2461 -3.0551 -0.4559 12 6 1.7710 -4.3671 -0.3518 13 6 0.4020 -4.6176 -0.4096 14 6 -0.0788 -5.9127 -0.3125 15 6 0.7915 -6.9667 -0.1471 16 6 2.1770 -6.7284 -0.0817 17 6 3.0770 -7.8058 0.0875 18 1 4.0332 -7.6413 0.5620 19 6 2.7289 -9.0852 -0.3598 20 7 1.7077 -9.2421 -1.1625 21 14 3.7221 -10.5690 0.1891 22 1 3.6696 -10.6798 1.6690 23 1 3.1535 -11.7981 -0.4203 24 1 5.1329 -10.4086 -0.2456 25 6 2.6606 -5.4122 -0.1860 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7857 1.9178 0.9473 31 1 3.1223 1.4452 -0.1289 32 1 1.5752 1.9921 -0.8186 33 1 0.6951 -0.4051 -2.8615 34 1 1.7353 1.4887 -3.8466 35 1 3.0484 -2.7905 0.0210 36 1 -0.2887 -3.7969 -0.5351 37 1 -1.1419 -6.0964 -0.3628 38 1 0.4115 -7.9745 -0.0682 39 1 1.4665 -10.1289 -1.4728 40 1 3.7220 -5.2187 -0.1374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861929736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:39 Heat of formation + Delta-G solvation = -79.151007 kcal Electronic energy + Delta-G solvation = -22887.908277 eV Core-core repulsion = 19473.205638 eV Total energy + Delta-G solvation = -3414.702638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.85623 -40.26938 -38.99100 -37.00425 -36.18149 -34.89054 -33.96870 -31.76859 -30.57466 -28.31999 -28.06575 -27.16357 -23.68373 -22.96919 -22.81994 -21.72794 -20.57035 -19.56396 -19.38284 -17.73623 -17.31496 -17.16625 -16.90573 -16.54265 -16.41523 -15.85107 -15.20361 -15.00687 -14.83479 -14.55977 -14.52498 -14.18898 -13.99544 -13.54012 -13.32003 -12.97670 -12.94155 -12.88301 -12.73026 -12.39382 -12.28568 -12.04708 -11.95295 -11.84972 -11.44889 -11.16168 -10.99312 -10.89975 -10.66281 -10.06082 -9.40559 -8.77568 -8.57626 -6.37180 0.81189 0.97467 1.40086 1.49333 1.52022 1.65158 1.82465 1.95617 2.22639 2.58066 2.77130 3.49802 3.70580 3.74750 3.90675 4.12787 4.25564 4.41367 4.49463 4.61601 4.65578 4.79251 4.92824 4.99338 5.00377 5.03519 5.10676 5.10815 5.17623 5.30515 5.33201 5.39946 5.44373 5.72544 5.81860 6.08012 6.10969 6.27136 6.55264 6.56264 6.69266 6.93233 6.96860 7.17074 7.26477 8.36593 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.003338 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.661989 B = 8387.234910 C = 8625.571601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.126 4.126 4 C 0.137 3.863 5 H 0.111 0.889 6 N -0.714 5.714 7 C 0.495 3.505 8 O -0.589 6.589 9 C 0.509 3.491 10 O -0.548 6.548 11 N -0.655 5.655 12 C 0.162 3.838 13 C -0.232 4.232 14 C -0.099 4.099 15 C -0.191 4.191 16 C 0.095 3.905 17 C -0.499 4.499 18 H 0.080 0.920 19 C 0.033 3.967 20 N -0.831 5.831 21 Si 0.985 3.015 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.260 1.260 25 C -0.254 4.254 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.416 0.584 34 H 0.183 0.817 35 H 0.419 0.581 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.287 0.713 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 16.092 0.294 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.183 4.183 4 C 0.028 3.972 5 H 0.128 0.872 6 N -0.370 5.370 7 C 0.265 3.735 8 O -0.467 6.467 9 C 0.296 3.704 10 O -0.426 6.426 11 N -0.300 5.300 12 C 0.069 3.931 13 C -0.253 4.253 14 C -0.118 4.118 15 C -0.211 4.211 16 C 0.092 3.908 17 C -0.529 4.529 18 H 0.098 0.902 19 C -0.181 4.181 20 N -0.457 5.457 21 Si 0.805 3.195 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.184 1.184 25 C -0.275 4.275 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.253 0.747 34 H 0.199 0.801 35 H 0.256 0.744 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.669 16.053 0.025 16.067 hybrid contribution 0.207 -1.142 0.043 1.161 sum -0.463 14.911 0.068 14.919 Atomic orbital electron populations 1.21798 0.94269 1.01200 1.02861 1.21454 0.96957 0.97617 0.95493 1.21751 1.01163 0.93764 1.01609 1.20797 1.00760 0.86826 0.88836 0.87171 1.46448 1.30720 1.31558 1.28272 1.23501 0.83276 0.78886 0.87813 1.90709 1.27326 1.64749 1.63917 1.21140 0.82876 0.88114 0.78227 1.90692 1.28656 1.80469 1.42734 1.43371 1.29940 1.08519 1.48132 1.17437 0.92579 0.83119 0.99984 1.20493 0.93489 0.96392 1.14950 1.20836 0.98541 0.92802 0.99645 1.21336 0.93570 0.97950 1.08234 1.17739 0.92790 0.92139 0.88145 1.19799 1.03345 0.93362 1.36370 0.90207 1.26771 0.96000 1.03123 0.92202 1.69878 1.25656 1.26076 1.24120 0.85213 0.78824 0.75802 0.79615 1.18305 1.19474 1.18400 1.20896 0.97475 0.92180 1.16995 0.91683 0.94557 0.91222 0.89443 0.91851 0.92557 0.93020 0.74658 0.80114 0.74391 0.87197 0.87255 0.87859 0.90243 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.79 71.98 0.63 -2.24 16 2 C -0.10 -1.86 2.76 -10.79 -0.03 -1.89 16 3 C -0.13 -2.30 7.65 71.98 0.55 -1.75 16 4 C 0.14 3.07 2.38 44.25 0.11 3.18 16 5 H 0.11 2.47 7.58 -2.39 -0.02 2.45 16 6 N -0.71 -13.34 4.10 -459.83 -1.89 -15.23 16 7 C 0.49 8.20 11.18 129.79 1.45 9.65 16 8 O -0.59 -14.47 14.16 -3.05 -0.04 -14.51 16 9 C 0.51 15.55 5.78 87.66 0.51 16.05 16 10 O -0.55 -20.35 13.26 -3.06 -0.04 -20.39 16 11 N -0.65 -21.41 5.34 -303.65 -1.62 -23.03 16 12 C 0.16 7.03 6.29 38.10 0.24 7.27 16 13 C -0.23 -10.65 8.67 22.58 0.20 -10.46 16 14 C -0.10 -4.81 10.02 22.20 0.22 -4.58 16 15 C -0.19 -10.21 8.67 22.75 0.20 -10.01 16 16 C 0.09 5.10 5.56 -21.31 -0.12 4.98 16 17 C -0.50 -26.60 9.06 23.46 0.21 -26.39 16 18 H 0.08 4.03 7.88 -2.91 -0.02 4.01 16 19 C 0.03 1.67 5.21 85.25 0.44 2.12 16 20 N -0.83 -43.91 10.89 21.83 0.24 -43.67 16 21 Si 0.98 37.96 29.58 68.60 2.03 39.99 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 25 C -0.25 -12.12 9.70 22.85 0.22 -11.90 16 26 H 0.06 1.18 7.54 -2.38 -0.02 1.16 16 27 H 0.04 0.91 7.11 -2.39 -0.02 0.89 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.18 7.24 -2.38 -0.02 1.16 16 32 H 0.05 0.96 6.35 -2.39 -0.02 0.95 16 33 H 0.42 7.46 7.84 -92.71 -0.73 6.73 16 34 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.42 10.75 8.81 -92.70 -0.82 9.93 16 36 H 0.11 4.86 6.31 -2.91 -0.02 4.84 16 37 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 38 H 0.10 5.76 6.19 -2.91 -0.02 5.74 16 39 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 40 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -67.72 330.09 3.04 -64.68 By element: Atomic # 1 Polarization: 38.61 SS G_CDS: -0.47 Total: 38.14 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 4.83 Total: -25.99 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -3.27 Total: -81.93 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.08 Total: -34.90 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -67.72 3.04 -64.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861929736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.467 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds