Wall clock time and date at job start Tue Mar 31 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47339 * 2 1 4 4 C 1.53006 * 109.46597 * 240.00301 * 2 1 3 5 5 C 1.50697 * 109.47478 * 60.00188 * 4 2 1 6 6 O 1.21281 * 119.99760 * 0.02562 * 5 4 2 7 7 N 1.34769 * 120.00163 * 179.97438 * 5 4 2 8 8 C 1.39274 * 120.00066 * 185.14533 * 7 5 4 9 9 C 1.39669 * 119.57408 * 174.64653 * 8 7 5 10 10 C 1.38652 * 119.49505 * 179.97438 * 9 8 7 11 11 C 1.38348 * 118.67169 * 359.97438 * 10 9 8 12 12 C 1.40575 * 119.12614 * 359.97438 * 11 10 9 13 13 C 1.41339 * 119.78838 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99901 * 0.02562 * 13 12 11 15 15 C 1.40024 * 120.00034 * 180.02562 * 13 12 11 16 16 N 1.30743 * 120.00396 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99961 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47228 * 89.99477 * 17 15 13 19 19 H 1.48496 * 109.47165 * 210.00023 * 17 15 13 20 20 H 1.48503 * 109.47055 * 329.99934 * 17 15 13 21 21 N 1.31900 * 119.57208 * 354.37352 * 8 7 5 22 22 C 1.52995 * 109.47358 * 120.00404 * 2 1 3 23 23 C 1.53002 * 117.49599 * 13.74468 * 22 2 1 24 24 C 1.52997 * 117.49805 * 305.08533 * 22 2 1 25 25 H 1.08994 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46667 * 299.99952 * 1 2 3 27 27 H 1.08999 * 109.46960 * 59.99658 * 1 2 3 28 28 H 0.96700 * 114.00227 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47281 * 299.99742 * 4 2 1 30 30 H 1.09003 * 109.46676 * 179.97438 * 4 2 1 31 31 H 0.97002 * 120.00346 * 5.14660 * 7 5 4 32 32 H 1.07998 * 120.25534 * 359.95377 * 9 8 7 33 33 H 1.08001 * 120.66882 * 180.02562 * 10 9 8 34 34 H 1.07999 * 120.43835 * 179.97438 * 11 10 9 35 35 H 0.96999 * 120.00291 * 179.97438 * 16 15 13 36 36 H 1.09004 * 115.55499 * 159.41312 * 22 2 1 37 37 H 1.08999 * 117.50260 * 0.02562 * 23 22 2 38 38 H 1.09003 * 117.49791 * 145.02333 * 23 22 2 39 39 H 1.09001 * 117.50199 * 214.97940 * 24 22 2 40 40 H 1.09000 * 117.50175 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5376 -0.0108 -2.4798 6 8 0.8408 0.9756 -2.3684 7 7 1.8635 -0.4709 -3.7038 8 6 1.4901 0.2446 -4.8389 9 6 1.9277 -0.1791 -6.0958 10 6 1.5546 0.5341 -7.2247 11 6 0.7538 1.6514 -7.0694 12 6 0.3452 2.0262 -5.7775 13 6 -0.4726 3.1656 -5.6026 14 1 -0.7819 3.7450 -6.4599 15 6 -0.8816 3.5432 -4.3178 16 7 -0.5076 2.8416 -3.2800 17 14 -1.9631 5.0488 -4.0867 18 1 -3.3912 4.6475 -4.1538 19 1 -1.6826 5.6613 -2.7633 20 1 -1.6750 6.0345 -5.1594 21 7 0.7233 1.3105 -4.7135 22 6 2.0401 -0.7213 1.2491 23 6 1.0326 -1.5534 2.0452 24 6 1.5401 -0.2227 2.6064 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.9704 1.4236 -0.0004 29 1 1.6766 -1.7488 -1.2494 30 1 3.1299 -0.7208 -1.2496 31 1 2.3581 -1.3004 -3.7944 32 1 2.5523 -1.0554 -6.1876 33 1 1.8818 0.2231 -8.2059 34 1 0.4465 2.2282 -7.9292 35 1 -0.7907 3.1034 -2.3899 36 1 3.0648 -1.0890 1.1943 37 1 0.0066 -1.5872 1.6788 38 1 1.3947 -2.4682 2.5145 39 1 2.2357 -0.2626 3.4447 40 1 0.8475 0.6190 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:22 Heat of formation + Delta-G solvation = 2.741512 kcal Electronic energy + Delta-G solvation = -23696.374710 eV Core-core repulsion = 20285.223198 eV Total energy + Delta-G solvation = -3411.151512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80587 -38.58444 -37.19116 -35.23009 -33.99165 -32.91624 -31.36133 -30.23573 -29.17673 -27.43522 -25.45189 -23.96637 -22.43116 -21.83986 -21.08256 -19.46503 -19.17394 -17.70637 -16.83942 -16.18923 -15.69407 -15.43695 -15.06614 -14.62464 -14.40505 -14.15573 -13.64315 -13.44975 -13.02106 -12.81529 -12.66902 -12.25611 -12.18479 -11.85975 -11.45509 -11.35705 -11.14344 -10.94834 -10.88870 -10.68917 -10.60266 -10.47286 -10.41424 -10.14603 -9.87841 -9.67177 -9.54480 -8.94466 -8.68028 -7.90733 -7.12246 -6.89259 -6.07439 -4.34314 2.84505 3.12956 3.22035 3.24144 3.31226 3.63803 3.83763 3.90821 4.11680 4.61947 4.63177 4.82698 4.97838 4.98552 5.04997 5.22756 5.38926 5.55729 5.59223 5.73653 5.80293 5.94072 6.02462 6.09180 6.10188 6.16050 6.23627 6.33624 6.53625 6.73672 6.87938 6.89397 6.93889 7.32170 7.61097 7.69408 7.86137 8.03818 8.13742 8.26618 8.54354 8.81088 9.11052 9.40226 10.30805 10.54441 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.005761 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.981008 B = 4859.255921 C = 6407.310395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.184 3.816 3 O -0.531 6.531 4 C -0.165 4.165 5 C 0.465 3.535 6 O -0.383 6.383 7 N -0.671 5.671 8 C 0.373 3.627 9 C -0.361 4.361 10 C -0.037 4.037 11 C -0.308 4.308 12 C 0.270 3.730 13 C -0.425 4.425 14 H 0.081 0.919 15 C 0.057 3.943 16 N -0.649 5.649 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.264 1.264 21 N -0.472 5.472 22 C -0.186 4.186 23 C -0.179 4.179 24 C -0.166 4.166 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.364 0.636 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.396 0.604 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.274 0.726 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -8.382 9.760 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.143 3.857 3 O -0.335 6.335 4 C -0.206 4.206 5 C 0.246 3.754 6 O -0.245 6.245 7 N -0.319 5.319 8 C 0.134 3.866 9 C -0.386 4.386 10 C -0.061 4.061 11 C -0.331 4.331 12 C 0.146 3.854 13 C -0.456 4.456 14 H 0.099 0.901 15 C -0.172 4.172 16 N -0.267 5.267 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.203 1.203 20 H -0.189 1.189 21 N -0.191 5.191 22 C -0.205 4.205 23 C -0.216 4.216 24 C -0.203 4.203 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.209 0.791 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.229 0.771 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.410 -7.205 11.015 13.597 hybrid contribution 0.983 -0.500 -0.810 1.369 sum 4.394 -7.705 10.204 13.520 Atomic orbital electron populations 1.22114 0.92395 1.01493 1.05218 1.20222 0.95144 0.81627 0.88719 1.86778 1.25233 1.24781 1.96676 1.22424 1.01905 1.01199 0.95094 1.20540 0.83909 0.87237 0.83690 1.91114 1.28835 1.20514 1.84066 1.43511 1.57595 1.25691 1.05067 1.18649 0.92624 0.91445 0.83894 1.20489 1.17884 1.07740 0.92526 1.20548 0.95321 0.94259 0.95960 1.21612 1.10820 1.02619 0.98049 1.18387 0.89804 0.91354 0.85901 1.19570 1.25016 1.07602 0.93399 0.90094 1.26154 0.96870 0.97779 0.96411 1.70285 1.27149 1.30603 0.98710 0.86557 0.80745 0.82393 0.78511 1.19750 1.20295 1.18854 1.68723 1.14245 1.05303 1.30808 1.23098 0.99106 1.04538 0.93733 1.23117 0.99849 0.94843 1.03817 1.22857 1.03749 0.97982 0.95731 0.92274 0.92778 0.87755 0.79055 0.89254 0.89910 0.77137 0.89282 0.88787 0.88697 0.91442 0.88103 0.87886 0.89180 0.89222 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 7.18 37.16 0.27 -2.17 16 2 C 0.18 2.58 0.80 -90.62 -0.07 2.51 16 3 O -0.53 -8.71 11.85 -53.50 -0.63 -9.34 16 4 C -0.17 -2.25 4.95 -27.88 -0.14 -2.39 16 5 C 0.46 9.08 7.35 -10.99 -0.08 9.00 16 6 O -0.38 -9.23 8.73 -12.71 -0.11 -9.34 16 7 N -0.67 -13.13 5.38 -11.40 -0.06 -13.19 16 8 C 0.37 9.15 7.43 -154.98 -1.15 8.00 16 9 C -0.36 -8.22 9.95 -38.89 -0.39 -8.61 16 10 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 11 C -0.31 -7.90 9.83 -38.66 -0.38 -8.28 16 12 C 0.27 7.69 6.55 -85.00 -0.56 7.14 16 13 C -0.43 -11.86 9.14 -37.73 -0.34 -12.21 16 14 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 15 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 16 N -0.65 -18.04 9.00 55.55 0.50 -17.54 16 17 Si 0.89 19.63 29.56 -169.99 -5.02 14.60 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 21 N -0.47 -13.28 5.74 -10.25 -0.06 -13.33 16 22 C -0.19 -2.04 5.32 -90.62 -0.48 -2.52 16 23 C -0.18 -1.78 9.66 -26.69 -0.26 -2.04 16 24 C -0.17 -1.75 9.86 -26.69 -0.26 -2.01 16 25 H 0.06 0.80 6.74 -51.93 -0.35 0.45 16 26 H 0.05 0.81 6.96 -51.93 -0.36 0.45 16 27 H 0.10 2.11 5.51 -51.93 -0.29 1.82 16 28 H 0.36 4.65 9.05 45.56 0.41 5.06 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.40 5.97 8.70 -40.82 -0.36 5.62 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.06 5.89 -51.93 -0.31 0.76 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.17 7.28 -51.93 -0.38 0.79 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -33.17 326.39 -9.37 -42.53 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -4.55 Total: 14.07 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -4.34 Total: -13.38 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.38 Total: -44.07 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.75 Total: -18.68 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.17 -9.37 -42.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.275 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds