Wall clock time and date at job start Tue Mar 31 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47339 * 2 1 4 4 C 1.53006 * 109.46597 * 240.00301 * 2 1 3 5 5 C 1.50697 * 109.47478 * 60.00188 * 4 2 1 6 6 O 1.21281 * 119.99760 * 0.02562 * 5 4 2 7 7 N 1.34769 * 120.00163 * 179.97438 * 5 4 2 8 8 C 1.39274 * 120.00066 * 185.14533 * 7 5 4 9 9 C 1.39669 * 119.57408 * 174.64653 * 8 7 5 10 10 C 1.38652 * 119.49505 * 179.97438 * 9 8 7 11 11 C 1.38348 * 118.67169 * 359.97438 * 10 9 8 12 12 C 1.40575 * 119.12614 * 359.97438 * 11 10 9 13 13 C 1.41339 * 119.78838 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99901 * 0.02562 * 13 12 11 15 15 C 1.40024 * 120.00034 * 180.02562 * 13 12 11 16 16 N 1.30743 * 120.00396 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99961 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47228 * 89.99477 * 17 15 13 19 19 H 1.48496 * 109.47165 * 210.00023 * 17 15 13 20 20 H 1.48503 * 109.47055 * 329.99934 * 17 15 13 21 21 N 1.31900 * 119.57208 * 354.37352 * 8 7 5 22 22 C 1.52995 * 109.47358 * 120.00404 * 2 1 3 23 23 C 1.53002 * 117.49599 * 13.74468 * 22 2 1 24 24 C 1.52997 * 117.49805 * 305.08533 * 22 2 1 25 25 H 1.08994 * 109.47095 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46667 * 299.99952 * 1 2 3 27 27 H 1.08999 * 109.46960 * 59.99658 * 1 2 3 28 28 H 0.96700 * 114.00227 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47281 * 299.99742 * 4 2 1 30 30 H 1.09003 * 109.46676 * 179.97438 * 4 2 1 31 31 H 0.97002 * 120.00346 * 5.14660 * 7 5 4 32 32 H 1.07998 * 120.25534 * 359.95377 * 9 8 7 33 33 H 1.08001 * 120.66882 * 180.02562 * 10 9 8 34 34 H 1.07999 * 120.43835 * 179.97438 * 11 10 9 35 35 H 0.96999 * 120.00291 * 179.97438 * 16 15 13 36 36 H 1.09004 * 115.55499 * 159.41312 * 22 2 1 37 37 H 1.08999 * 117.50260 * 0.02562 * 23 22 2 38 38 H 1.09003 * 117.49791 * 145.02333 * 23 22 2 39 39 H 1.09001 * 117.50199 * 214.97940 * 24 22 2 40 40 H 1.09000 * 117.50175 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5376 -0.0108 -2.4798 6 8 0.8408 0.9756 -2.3684 7 7 1.8635 -0.4709 -3.7038 8 6 1.4901 0.2446 -4.8389 9 6 1.9277 -0.1791 -6.0958 10 6 1.5546 0.5341 -7.2247 11 6 0.7538 1.6514 -7.0694 12 6 0.3452 2.0262 -5.7775 13 6 -0.4726 3.1656 -5.6026 14 1 -0.7819 3.7450 -6.4599 15 6 -0.8816 3.5432 -4.3178 16 7 -0.5076 2.8416 -3.2800 17 14 -1.9631 5.0488 -4.0867 18 1 -3.3912 4.6475 -4.1538 19 1 -1.6826 5.6613 -2.7633 20 1 -1.6750 6.0345 -5.1594 21 7 0.7233 1.3105 -4.7135 22 6 2.0401 -0.7213 1.2491 23 6 1.0326 -1.5534 2.0452 24 6 1.5401 -0.2227 2.6064 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.9704 1.4236 -0.0004 29 1 1.6766 -1.7488 -1.2494 30 1 3.1299 -0.7208 -1.2496 31 1 2.3581 -1.3004 -3.7944 32 1 2.5523 -1.0554 -6.1876 33 1 1.8818 0.2231 -8.2059 34 1 0.4465 2.2282 -7.9292 35 1 -0.7907 3.1034 -2.3899 36 1 3.0648 -1.0890 1.1943 37 1 0.0066 -1.5872 1.6788 38 1 1.3947 -2.4682 2.5145 39 1 2.2357 -0.2626 3.4447 40 1 0.8475 0.6190 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:21 Heat of formation + Delta-G solvation = -19.082284 kcal Electronic energy + Delta-G solvation = -23697.321061 eV Core-core repulsion = 20285.223198 eV Total energy + Delta-G solvation = -3412.097863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18008 -40.06536 -38.75611 -36.32745 -35.77371 -34.74732 -32.61946 -32.13579 -30.94730 -28.78906 -27.35473 -25.12621 -23.60484 -23.21069 -22.88185 -20.83726 -20.46795 -19.53032 -18.11182 -17.84348 -16.97151 -16.73220 -16.33158 -16.32471 -16.21430 -15.51873 -15.31005 -14.81626 -14.71617 -14.24232 -13.94450 -13.85815 -13.64664 -13.27039 -12.94149 -12.72515 -12.65933 -12.54838 -12.47445 -12.29948 -12.02853 -11.77358 -11.70790 -11.39534 -11.31956 -11.02660 -10.78602 -10.75161 -10.28360 -9.85492 -8.98141 -8.73974 -8.01573 -6.39063 0.97048 1.28730 1.38866 1.50918 1.52844 2.26815 2.29618 2.41516 2.86378 3.03197 3.58243 3.67340 3.79719 4.05486 4.08986 4.12776 4.23169 4.31915 4.46064 4.46782 4.67012 4.77713 4.81238 4.89423 4.92604 4.98124 4.98968 5.07112 5.09031 5.11760 5.27923 5.32395 5.36064 5.60713 5.71821 5.93241 5.95641 6.18800 6.42798 6.81181 6.92889 7.03854 7.12889 7.88963 8.40008 8.59139 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.005761 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.981008 B = 4859.255921 C = 6407.310395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.182 3.818 3 O -0.563 6.563 4 C -0.148 4.148 5 C 0.451 3.549 6 O -0.431 6.431 7 N -0.661 5.661 8 C 0.351 3.649 9 C -0.350 4.350 10 C -0.035 4.035 11 C -0.335 4.335 12 C 0.237 3.763 13 C -0.467 4.467 14 H 0.082 0.918 15 C 0.012 3.988 16 N -0.679 5.679 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.256 1.256 21 N -0.504 5.504 22 C -0.182 4.182 23 C -0.170 4.170 24 C -0.173 4.173 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.377 0.623 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.418 0.582 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.269 0.731 36 H 0.127 0.873 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.503 -10.550 10.465 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.141 3.859 3 O -0.369 6.369 4 C -0.189 4.189 5 C 0.235 3.765 6 O -0.296 6.296 7 N -0.311 5.311 8 C 0.111 3.889 9 C -0.375 4.375 10 C -0.060 4.060 11 C -0.358 4.358 12 C 0.112 3.888 13 C -0.498 4.498 14 H 0.101 0.899 15 C -0.214 4.214 16 N -0.298 5.298 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.180 1.180 21 N -0.224 5.224 22 C -0.200 4.200 23 C -0.207 4.207 24 C -0.210 4.210 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.224 0.776 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.255 0.745 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.047 -9.431 11.716 15.864 hybrid contribution 0.571 0.031 -1.080 1.223 sum 5.618 -9.400 10.635 15.265 Atomic orbital electron populations 1.22031 0.94387 1.01901 1.02496 1.20277 0.93773 0.81213 0.90628 1.86751 1.26582 1.26678 1.96901 1.22375 1.03705 1.01506 0.91279 1.21657 0.82943 0.86998 0.84920 1.91138 1.30761 1.22839 1.84822 1.43559 1.57359 1.26111 1.04083 1.19214 0.92159 0.91184 0.86309 1.20984 1.16665 1.08221 0.91656 1.21018 0.93864 0.92987 0.98094 1.21784 1.12361 1.04286 0.97362 1.18863 0.90552 0.92092 0.87314 1.19862 1.26922 1.08788 0.94246 0.89937 1.26962 0.97990 1.00755 0.95714 1.70492 1.28458 1.32200 0.98621 0.85409 0.78731 0.78448 0.78357 1.19063 1.20118 1.18011 1.68703 1.15600 1.06777 1.31327 1.22957 1.00439 1.04666 0.91964 1.23190 0.99246 0.95332 1.02898 1.22878 1.03939 0.97853 0.96296 0.90274 0.93229 0.92604 0.77598 0.86327 0.86579 0.74515 0.85199 0.84798 0.88092 0.92056 0.85552 0.88709 0.86793 0.87378 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 7.18 71.98 0.52 -4.31 16 2 C 0.18 4.87 0.80 -10.79 -0.01 4.86 16 3 O -0.56 -18.57 11.85 -131.52 -1.56 -20.13 16 4 C -0.15 -3.65 4.95 29.85 0.15 -3.51 16 5 C 0.45 17.43 7.35 87.66 0.64 18.08 16 6 O -0.43 -21.55 8.73 14.43 0.13 -21.42 16 7 N -0.66 -25.00 5.38 -308.37 -1.66 -26.66 16 8 C 0.35 17.11 7.43 133.25 0.99 18.10 16 9 C -0.35 -15.18 9.95 22.71 0.23 -14.95 16 10 C -0.04 -1.58 10.15 22.39 0.23 -1.35 16 11 C -0.33 -17.42 9.83 22.87 0.22 -17.19 16 12 C 0.24 14.02 6.55 40.19 0.26 14.28 16 13 C -0.47 -27.34 9.14 23.47 0.21 -27.12 16 14 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 15 C 0.01 0.67 5.50 85.29 0.47 1.14 16 16 N -0.68 -39.86 9.00 21.84 0.20 -39.67 16 17 Si 0.97 42.19 29.56 68.60 2.03 44.22 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 N -0.50 -29.28 5.74 -186.36 -1.07 -30.35 16 22 C -0.18 -3.43 5.32 -10.80 -0.06 -3.48 16 23 C -0.17 -2.85 9.66 30.62 0.30 -2.56 16 24 C -0.17 -3.29 9.86 30.62 0.30 -2.99 16 25 H 0.08 2.10 6.74 -2.39 -0.02 2.08 16 26 H 0.05 1.55 6.96 -2.39 -0.02 1.54 16 27 H 0.06 2.39 5.51 -2.39 -0.01 2.37 16 28 H 0.38 9.43 9.05 -74.06 -0.67 8.76 16 29 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.42 11.37 8.70 -92.71 -0.81 10.57 16 32 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 34 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 35 H 0.27 15.14 8.29 -92.71 -0.77 14.37 16 36 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.09 1.76 5.89 -2.39 -0.01 1.74 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.81 7.28 -2.39 -0.02 1.79 16 Total: -1.00 -77.56 326.39 2.12 -75.44 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -0.39 Total: 39.59 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.45 Total: -21.01 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -2.53 Total: -96.68 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.43 Total: -41.56 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -77.56 2.12 -75.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.355 kcal (2) G-P(sol) polarization free energy of solvation -77.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds