Wall clock time and date at job start Tue Mar 31 2020 06:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47208 * 2 1 4 4 C 1.53006 * 109.47014 * 119.99939 * 2 1 3 5 5 C 1.50697 * 109.46945 * 177.07948 * 4 2 1 6 6 O 1.21274 * 120.00413 * 3.46109 * 5 4 2 7 7 N 1.34779 * 120.00011 * 183.46360 * 5 4 2 8 8 C 1.39267 * 120.00197 * 183.57321 * 7 5 4 9 9 C 1.39675 * 119.57326 * 339.07469 * 8 7 5 10 10 C 1.38650 * 119.49389 * 180.02562 * 9 8 7 11 11 C 1.38352 * 118.67150 * 359.74889 * 10 9 8 12 12 C 1.40573 * 119.12774 * 0.49544 * 11 10 9 13 13 C 1.41338 * 119.78965 * 179.77276 * 12 11 10 14 14 H 1.08002 * 119.99702 * 4.88823 * 13 12 11 15 15 C 1.40028 * 119.99941 * 184.89593 * 13 12 11 16 16 N 1.30744 * 119.99516 * 184.77643 * 15 13 12 17 17 Si 1.86794 * 120.00244 * 4.77684 * 15 13 12 18 18 H 1.48505 * 109.47121 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47199 * 300.00020 * 17 15 13 20 20 H 1.48498 * 109.47086 * 60.00040 * 17 15 13 21 21 N 1.31900 * 119.57372 * 159.09253 * 8 7 5 22 22 C 1.53005 * 109.47071 * 239.99679 * 2 1 3 23 23 C 1.52992 * 117.49759 * 128.74891 * 22 2 1 24 24 C 1.52998 * 117.49783 * 60.08874 * 22 2 1 25 25 H 1.09002 * 109.47177 * 304.86829 * 1 2 3 26 26 H 1.08992 * 109.46980 * 64.86899 * 1 2 3 27 27 H 1.09008 * 109.47038 * 184.87145 * 1 2 3 28 28 H 0.96703 * 113.99776 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46854 * 57.08213 * 4 2 1 30 30 H 1.08998 * 109.47089 * 297.08349 * 4 2 1 31 31 H 0.96999 * 119.99595 * 3.56756 * 7 5 4 32 32 H 1.07997 * 120.25014 * 0.02562 * 9 8 7 33 33 H 1.08000 * 120.66592 * 180.02562 * 10 9 8 34 34 H 1.08001 * 120.43800 * 180.24301 * 11 10 9 35 35 H 0.97001 * 120.00508 * 354.98484 * 16 15 13 36 36 H 1.09000 * 115.55178 * 274.41851 * 22 2 1 37 37 H 1.09003 * 117.50181 * 359.97438 * 23 22 2 38 38 H 1.08996 * 117.49902 * 145.02121 * 23 22 2 39 39 H 1.08999 * 117.49745 * 214.98208 * 24 22 2 40 40 H 1.09007 * 117.49558 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5453 -0.7843 1.2136 6 8 4.1536 -0.2456 0.3134 7 7 4.2155 -1.4393 2.1822 8 6 5.6081 -1.4348 2.1907 9 6 6.3037 -1.1521 1.0129 10 6 7.6901 -1.1486 1.0230 11 6 8.3460 -1.4222 2.2101 12 6 7.5892 -1.7042 3.3607 13 6 8.2448 -1.9904 4.5797 14 1 9.3202 -1.9147 4.6451 15 6 7.5001 -2.3720 5.7024 16 7 8.0954 -2.5460 6.8534 17 14 5.6563 -2.6326 5.5557 18 1 5.1057 -3.0290 6.8767 19 1 5.0120 -1.3712 5.1098 20 1 5.3852 -3.7043 4.5641 21 7 6.2532 -1.6978 3.3107 22 6 2.0400 -0.7213 -1.2492 23 6 3.0763 0.0038 -2.1100 24 6 1.6375 -0.1485 -2.6096 25 1 -0.3634 0.5875 0.8432 26 1 -0.3633 0.4364 -0.9303 27 1 -0.3633 -1.0240 0.0873 28 1 2.9704 1.4235 -0.0004 29 1 1.6346 -1.7327 1.2758 30 1 1.7200 -0.1781 2.1385 31 1 3.7278 -1.9139 2.8735 32 1 5.7656 -0.9380 0.1013 33 1 8.2470 -0.9321 0.1233 34 1 9.4252 -1.4231 2.2513 35 1 9.0614 -2.4821 6.9144 36 1 2.1253 -1.8047 -1.1647 37 1 3.3945 0.9949 -1.7867 38 1 3.8431 -0.6025 -2.5921 39 1 1.4582 -0.8549 -3.4201 40 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:23 Heat of formation + Delta-G solvation = -34.428808 kcal Electronic energy + Delta-G solvation = -23467.828686 eV Core-core repulsion = 20055.065347 eV Total energy + Delta-G solvation = -3412.763338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68034 -39.06878 -37.76012 -35.00143 -34.59152 -33.57691 -32.29927 -31.15004 -29.84844 -28.06813 -25.36059 -23.72140 -22.32396 -22.12391 -21.75779 -20.11953 -19.76869 -18.41311 -17.47111 -17.06646 -16.51931 -15.75025 -15.59327 -15.08988 -14.71526 -14.32369 -14.11956 -13.65146 -13.18966 -13.08943 -12.83489 -12.74043 -12.52476 -12.33691 -12.21839 -12.03541 -11.91732 -11.32072 -11.23478 -11.06385 -10.87344 -10.43814 -10.37299 -10.17678 -9.95344 -9.86963 -9.69544 -9.23847 -9.08844 -8.59173 -7.78882 -7.52999 -7.26113 -4.82008 2.15124 2.60201 2.96339 3.22388 3.48464 3.59602 3.82411 3.92731 4.18385 4.34651 4.51388 4.58875 4.64097 4.71268 5.01939 5.07240 5.21143 5.31710 5.42445 5.46445 5.49715 5.66808 5.68688 5.77655 5.82521 6.02412 6.04776 6.06345 6.17723 6.28932 6.41300 6.48084 6.53043 7.07897 7.14309 7.39540 7.51155 7.57627 7.69579 7.77138 8.06824 8.23973 8.39275 8.60974 9.35974 9.95916 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.004579 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.315698 B = 6112.886186 C = 6942.061544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.180 3.820 3 O -0.563 6.563 4 C -0.169 4.169 5 C 0.517 3.483 6 O -0.510 6.510 7 N -0.653 5.653 8 C 0.383 3.617 9 C -0.313 4.313 10 C -0.037 4.037 11 C -0.276 4.276 12 C 0.273 3.727 13 C -0.477 4.477 14 H 0.083 0.917 15 C 0.043 3.957 16 N -0.805 5.805 17 Si 1.155 2.845 18 H -0.332 1.332 19 H -0.280 1.280 20 H -0.295 1.295 21 N -0.599 5.599 22 C -0.177 4.177 23 C -0.140 4.140 24 C -0.183 4.183 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.388 0.612 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.406 0.594 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.283 0.717 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 1.914 -11.884 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.139 3.861 3 O -0.375 6.375 4 C -0.209 4.209 5 C 0.305 3.695 6 O -0.386 6.386 7 N -0.297 5.297 8 C 0.152 3.848 9 C -0.337 4.337 10 C -0.061 4.061 11 C -0.299 4.299 12 C 0.149 3.851 13 C -0.509 4.509 14 H 0.101 0.899 15 C -0.178 4.178 16 N -0.427 5.427 17 Si 0.990 3.010 18 H -0.266 1.266 19 H -0.208 1.208 20 H -0.224 1.224 21 N -0.324 5.324 22 C -0.195 4.195 23 C -0.177 4.177 24 C -0.220 4.220 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.241 0.759 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.241 0.759 32 H 0.165 0.835 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.550 1.931 -10.867 19.069 hybrid contribution 2.681 0.003 -1.045 2.878 sum -12.868 1.934 -11.912 17.642 Atomic orbital electron populations 1.21730 0.92129 1.02306 1.03106 1.20273 0.93856 0.81941 0.90068 1.86407 1.29164 1.25233 1.96665 1.22516 0.92193 1.04187 1.02041 1.20603 0.89816 0.77793 0.81329 1.90518 1.68858 1.45102 1.34121 1.43331 1.05573 1.51618 1.29168 1.18160 0.82143 0.94203 0.90255 1.21742 0.94187 1.19047 0.98730 1.20962 0.94018 0.94514 0.96585 1.21616 0.99094 1.15061 0.94116 1.18264 0.85657 0.87967 0.93247 1.20741 0.96144 1.39426 0.94562 0.89868 1.27780 1.10501 0.89130 0.90417 1.70642 1.13722 1.32623 1.25733 0.81848 0.70694 0.77726 0.70711 1.26571 1.20771 1.22360 1.66001 1.10546 1.30852 1.25050 1.22848 1.05696 0.99136 0.91822 1.22720 0.91222 1.02196 1.01514 1.22991 0.99647 1.02938 0.96440 0.91765 0.91495 0.91131 0.75866 0.87852 0.87566 0.75859 0.83532 0.87669 0.87747 0.90542 0.88118 0.88299 0.89376 0.89505 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.76 37.16 0.33 -0.86 16 2 C 0.18 1.96 0.92 -90.61 -0.08 1.88 16 3 O -0.56 -7.38 12.12 -52.59 -0.64 -8.02 16 4 C -0.17 -1.80 4.98 -27.88 -0.14 -1.94 16 5 C 0.52 7.69 7.22 -10.99 -0.08 7.61 16 6 O -0.51 -8.36 8.01 -11.79 -0.09 -8.45 16 7 N -0.65 -11.38 5.41 -11.40 -0.06 -11.44 16 8 C 0.38 8.47 7.51 -154.98 -1.16 7.30 16 9 C -0.31 -6.72 8.90 -38.89 -0.35 -7.07 16 10 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 11 C -0.28 -6.53 9.83 -38.66 -0.38 -6.91 16 12 C 0.27 7.10 6.40 -85.00 -0.54 6.56 16 13 C -0.48 -12.94 9.57 -37.73 -0.36 -13.31 16 14 H 0.08 2.25 8.05 -52.49 -0.42 1.83 16 15 C 0.04 1.16 5.52 -17.34 -0.10 1.06 16 16 N -0.81 -21.83 13.65 55.55 0.76 -21.07 16 17 Si 1.15 27.47 25.61 -169.99 -4.35 23.12 16 18 H -0.33 -7.83 7.11 56.52 0.40 -7.43 16 19 H -0.28 -6.54 6.60 56.52 0.37 -6.16 16 20 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 21 N -0.60 -14.90 4.54 -10.25 -0.05 -14.95 16 22 C -0.18 -1.96 3.98 -90.62 -0.36 -2.32 16 23 C -0.14 -1.67 7.95 -26.70 -0.21 -1.89 16 24 C -0.18 -1.87 9.62 -26.70 -0.26 -2.13 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.59 7.13 -51.93 -0.37 0.22 16 27 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.39 5.34 5.33 45.56 0.24 5.58 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.41 6.26 8.82 -40.82 -0.36 5.90 16 32 H 0.15 2.99 5.17 -52.90 -0.27 2.72 16 33 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.28 7.35 8.72 -40.82 -0.36 6.99 16 36 H 0.10 1.11 8.11 -51.93 -0.42 0.69 16 37 H 0.10 1.27 6.28 -51.93 -0.33 0.94 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.95 7.59 -51.93 -0.39 0.56 16 LS Contribution 321.64 15.07 4.85 4.85 Total: -1.00 -29.64 321.64 -8.57 -38.21 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.89 Total: 10.96 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -4.10 Total: -13.19 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.65 Total: -47.47 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.73 Total: -16.47 kcal Atomic # 14 Polarization: 27.47 SS G_CDS: -4.35 Total: 23.12 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.64 -8.57 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.780 kcal (2) G-P(sol) polarization free energy of solvation -29.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds