Wall clock time and date at job start Tue Mar 31 2020 06:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47208 * 2 1 4 4 C 1.53006 * 109.47014 * 119.99939 * 2 1 3 5 5 C 1.50697 * 109.46945 * 177.07948 * 4 2 1 6 6 O 1.21274 * 120.00413 * 3.46109 * 5 4 2 7 7 N 1.34779 * 120.00011 * 183.46360 * 5 4 2 8 8 C 1.39267 * 120.00197 * 183.57321 * 7 5 4 9 9 C 1.39675 * 119.57326 * 339.07469 * 8 7 5 10 10 C 1.38650 * 119.49389 * 180.02562 * 9 8 7 11 11 C 1.38352 * 118.67150 * 359.74889 * 10 9 8 12 12 C 1.40573 * 119.12774 * 0.49544 * 11 10 9 13 13 C 1.41338 * 119.78965 * 179.77276 * 12 11 10 14 14 H 1.08002 * 119.99702 * 4.88823 * 13 12 11 15 15 C 1.40028 * 119.99941 * 184.89593 * 13 12 11 16 16 N 1.30744 * 119.99516 * 184.77643 * 15 13 12 17 17 Si 1.86794 * 120.00244 * 4.77684 * 15 13 12 18 18 H 1.48505 * 109.47121 * 180.02562 * 17 15 13 19 19 H 1.48494 * 109.47199 * 300.00020 * 17 15 13 20 20 H 1.48498 * 109.47086 * 60.00040 * 17 15 13 21 21 N 1.31900 * 119.57372 * 159.09253 * 8 7 5 22 22 C 1.53005 * 109.47071 * 239.99679 * 2 1 3 23 23 C 1.52992 * 117.49759 * 128.74891 * 22 2 1 24 24 C 1.52998 * 117.49783 * 60.08874 * 22 2 1 25 25 H 1.09002 * 109.47177 * 304.86829 * 1 2 3 26 26 H 1.08992 * 109.46980 * 64.86899 * 1 2 3 27 27 H 1.09008 * 109.47038 * 184.87145 * 1 2 3 28 28 H 0.96703 * 113.99776 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46854 * 57.08213 * 4 2 1 30 30 H 1.08998 * 109.47089 * 297.08349 * 4 2 1 31 31 H 0.96999 * 119.99595 * 3.56756 * 7 5 4 32 32 H 1.07997 * 120.25014 * 0.02562 * 9 8 7 33 33 H 1.08000 * 120.66592 * 180.02562 * 10 9 8 34 34 H 1.08001 * 120.43800 * 180.24301 * 11 10 9 35 35 H 0.97001 * 120.00508 * 354.98484 * 16 15 13 36 36 H 1.09000 * 115.55178 * 274.41851 * 22 2 1 37 37 H 1.09003 * 117.50181 * 359.97438 * 23 22 2 38 38 H 1.08996 * 117.49902 * 145.02121 * 23 22 2 39 39 H 1.08999 * 117.49745 * 214.98208 * 24 22 2 40 40 H 1.09007 * 117.49558 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5453 -0.7843 1.2136 6 8 4.1536 -0.2456 0.3134 7 7 4.2155 -1.4393 2.1822 8 6 5.6081 -1.4348 2.1907 9 6 6.3037 -1.1521 1.0129 10 6 7.6901 -1.1486 1.0230 11 6 8.3460 -1.4222 2.2101 12 6 7.5892 -1.7042 3.3607 13 6 8.2448 -1.9904 4.5797 14 1 9.3202 -1.9147 4.6451 15 6 7.5001 -2.3720 5.7024 16 7 8.0954 -2.5460 6.8534 17 14 5.6563 -2.6326 5.5557 18 1 5.1057 -3.0290 6.8767 19 1 5.0120 -1.3712 5.1098 20 1 5.3852 -3.7043 4.5641 21 7 6.2532 -1.6978 3.3107 22 6 2.0400 -0.7213 -1.2492 23 6 3.0763 0.0038 -2.1100 24 6 1.6375 -0.1485 -2.6096 25 1 -0.3634 0.5875 0.8432 26 1 -0.3633 0.4364 -0.9303 27 1 -0.3633 -1.0240 0.0873 28 1 2.9704 1.4235 -0.0004 29 1 1.6346 -1.7327 1.2758 30 1 1.7200 -0.1781 2.1385 31 1 3.7278 -1.9139 2.8735 32 1 5.7656 -0.9380 0.1013 33 1 8.2470 -0.9321 0.1233 34 1 9.4252 -1.4231 2.2513 35 1 9.0614 -2.4821 6.9144 36 1 2.1253 -1.8047 -1.1647 37 1 3.3945 0.9949 -1.7867 38 1 3.8431 -0.6025 -2.5921 39 1 1.4582 -0.8549 -3.4201 40 1 1.0089 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:23 Heat of formation + Delta-G solvation = -52.410874 kcal Electronic energy + Delta-G solvation = -23468.608447 eV Core-core repulsion = 20055.065347 eV Total energy + Delta-G solvation = -3413.543099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.92527 -40.47511 -39.08767 -36.21932 -35.85859 -35.35994 -33.25180 -32.98089 -31.42527 -29.11162 -27.20762 -24.74942 -23.71742 -23.46404 -23.02041 -21.51544 -20.77401 -20.28542 -18.89972 -18.18092 -17.70223 -17.01026 -16.79879 -16.69691 -16.21751 -15.64070 -15.41333 -15.16799 -14.76710 -14.64980 -14.27407 -13.87713 -13.72716 -13.64533 -13.34965 -13.06290 -12.90626 -12.83488 -12.68184 -12.22657 -12.15966 -11.92656 -11.70122 -11.65679 -11.29809 -11.14573 -10.98415 -10.75110 -10.48677 -10.29174 -9.70044 -9.35523 -9.16698 -6.83094 0.53169 0.73896 1.54550 1.57139 1.74797 1.87720 2.09172 2.45722 2.66858 2.97661 3.33422 3.50894 3.57485 3.76511 3.82994 4.08956 4.14376 4.23980 4.42321 4.43231 4.51946 4.65276 4.68227 4.69490 4.77971 4.84929 4.88076 4.95861 5.04354 5.19769 5.34225 5.34931 5.36662 5.39722 5.41380 5.43751 5.75113 5.81797 5.93935 6.30976 6.42396 6.65374 6.74440 7.11231 7.50635 7.93955 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.004579 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.315698 B = 6112.886186 C = 6942.061544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.174 3.826 3 O -0.576 6.576 4 C -0.160 4.160 5 C 0.516 3.484 6 O -0.524 6.524 7 N -0.654 5.654 8 C 0.374 3.626 9 C -0.305 4.305 10 C -0.030 4.030 11 C -0.296 4.296 12 C 0.258 3.742 13 C -0.512 4.512 14 H 0.065 0.935 15 C 0.013 3.987 16 N -0.831 5.831 17 Si 1.189 2.811 18 H -0.330 1.330 19 H -0.274 1.274 20 H -0.290 1.290 21 N -0.612 5.612 22 C -0.176 4.176 23 C -0.157 4.157 24 C -0.168 4.168 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.382 0.618 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.417 0.583 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.110 0.890 35 H 0.280 0.720 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.594 1.833 -13.759 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.133 3.867 3 O -0.387 6.387 4 C -0.200 4.200 5 C 0.306 3.694 6 O -0.401 6.401 7 N -0.299 5.299 8 C 0.143 3.857 9 C -0.329 4.329 10 C -0.054 4.054 11 C -0.319 4.319 12 C 0.133 3.867 13 C -0.545 4.545 14 H 0.083 0.917 15 C -0.203 4.203 16 N -0.455 5.455 17 Si 1.020 2.980 18 H -0.264 1.264 19 H -0.202 1.202 20 H -0.218 1.218 21 N -0.338 5.338 22 C -0.195 4.195 23 C -0.195 4.195 24 C -0.205 4.205 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.234 0.766 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.254 0.746 32 H 0.180 0.820 33 H 0.159 0.841 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.481 1.858 -12.764 22.537 hybrid contribution 3.519 0.119 -0.739 3.598 sum -14.962 1.977 -13.503 20.251 Atomic orbital electron populations 1.21762 0.90142 1.03927 1.03201 1.20542 0.95218 0.80974 0.89979 1.86417 1.28646 1.26865 1.96743 1.22602 0.88332 1.06461 1.02559 1.21466 0.91476 0.76402 0.80101 1.90501 1.69658 1.45314 1.34586 1.43471 1.03649 1.52391 1.30412 1.18560 0.84354 0.93118 0.89658 1.22159 0.94472 1.17068 0.99168 1.21375 0.94338 0.92645 0.97038 1.21757 0.99592 1.16099 0.94405 1.18412 0.86665 0.88079 0.93547 1.20729 0.95556 1.42297 0.95935 0.91681 1.28655 1.12907 0.88611 0.90165 1.70671 1.13585 1.35071 1.26135 0.81432 0.67970 0.77872 0.70682 1.26389 1.20153 1.21837 1.65991 1.10172 1.31188 1.26466 1.22920 1.04971 0.99283 0.92296 1.22646 0.92097 1.01682 1.03026 1.23004 0.97963 1.03032 0.96464 0.91485 0.91659 0.88770 0.76558 0.84449 0.86022 0.74633 0.81974 0.84092 0.87187 0.90964 0.87622 0.89638 0.90111 0.88145 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.76 71.98 0.63 -1.18 16 2 C 0.17 3.21 0.92 -10.79 -0.01 3.20 16 3 O -0.58 -13.87 12.12 -132.39 -1.60 -15.47 16 4 C -0.16 -2.74 4.98 29.85 0.15 -2.59 16 5 C 0.52 13.72 7.22 87.66 0.63 14.35 16 6 O -0.52 -15.88 8.01 13.58 0.11 -15.77 16 7 N -0.65 -20.93 5.41 -308.37 -1.67 -22.60 16 8 C 0.37 15.80 7.51 133.25 1.00 16.80 16 9 C -0.30 -12.37 8.90 22.72 0.20 -12.16 16 10 C -0.03 -1.21 10.15 22.40 0.23 -0.98 16 11 C -0.30 -13.88 9.83 22.87 0.22 -13.65 16 12 C 0.26 13.53 6.40 40.19 0.26 13.79 16 13 C -0.51 -28.79 9.57 23.47 0.22 -28.56 16 14 H 0.06 3.74 8.05 -2.91 -0.02 3.71 16 15 C 0.01 0.70 5.52 85.29 0.47 1.17 16 16 N -0.83 -46.51 13.65 21.84 0.30 -46.21 16 17 Si 1.19 55.59 25.61 68.60 1.76 57.35 16 18 H -0.33 -15.15 7.11 99.48 0.71 -14.45 16 19 H -0.27 -12.38 6.60 99.48 0.66 -11.72 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 N -0.61 -29.89 4.54 -186.36 -0.85 -30.74 16 22 C -0.18 -3.39 3.98 -10.80 -0.04 -3.43 16 23 C -0.16 -3.51 7.95 30.62 0.24 -3.27 16 24 C -0.17 -3.00 9.62 30.62 0.29 -2.70 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.92 7.13 -2.39 -0.02 0.91 16 27 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.38 9.98 5.33 -74.06 -0.39 9.59 16 29 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.42 11.53 8.82 -92.71 -0.82 10.71 16 32 H 0.16 6.14 5.17 -9.42 -0.05 6.09 16 33 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.28 15.21 8.72 -92.71 -0.81 14.40 16 36 H 0.11 1.94 8.11 -2.39 -0.02 1.92 16 37 H 0.09 2.13 6.28 -2.39 -0.01 2.11 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.68 7.59 -2.38 -0.02 1.66 16 Total: -1.00 -64.62 321.64 2.29 -62.33 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.26 Total: 30.33 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 4.50 Total: -19.22 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -2.22 Total: -99.55 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.50 Total: -31.24 kcal Atomic # 14 Polarization: 55.59 SS G_CDS: 1.76 Total: 57.35 kcal Total: -64.62 2.29 -62.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.919 kcal (2) G-P(sol) polarization free energy of solvation -64.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds