Wall clock time and date at job start Tue Mar 31 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47247 * 2 1 4 4 H 1.09003 * 109.82011 * 305.88340 * 3 2 1 5 5 C 1.54381 * 109.83120 * 184.99961 * 3 2 1 6 6 C 1.55310 * 102.25405 * 219.03323 * 5 3 2 7 7 C 1.54945 * 100.93644 * 34.13325 * 6 5 3 8 8 H 1.09007 * 110.31167 * 82.57288 * 7 6 5 9 9 C 1.50701 * 110.30656 * 204.63681 * 7 6 5 10 10 O 1.21268 * 119.99758 * 115.00256 * 9 7 6 11 11 N 1.34781 * 120.00069 * 295.00302 * 9 7 6 12 12 C 1.39270 * 119.99790 * 175.12314 * 11 9 7 13 13 C 1.39673 * 119.57249 * 185.37088 * 12 11 9 14 14 C 1.38658 * 119.49338 * 179.97438 * 13 12 11 15 15 C 1.38346 * 118.66849 * 0.02562 * 14 13 12 16 16 C 1.40571 * 119.13291 * 359.97438 * 15 14 13 17 17 C 1.41339 * 119.79130 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99155 * 0.02562 * 17 16 15 19 19 C 1.40018 * 120.00380 * 180.02562 * 17 16 15 20 20 N 1.30742 * 119.99990 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00131 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47130 * 89.99941 * 21 19 17 23 23 H 1.48506 * 109.47170 * 209.99669 * 21 19 17 24 24 H 1.48498 * 109.47133 * 330.00032 * 21 19 17 25 25 N 1.31898 * 119.57626 * 5.09751 * 12 11 9 26 26 O 1.43233 * 109.90764 * 66.81924 * 3 2 1 27 27 H 1.09002 * 109.47132 * 300.00724 * 1 2 3 28 28 H 1.08998 * 109.46821 * 60.00070 * 1 2 3 29 29 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47482 * 239.99470 * 2 1 3 31 31 H 1.09001 * 109.47002 * 119.99425 * 2 1 3 32 32 H 1.09007 * 110.84873 * 100.84630 * 5 3 2 33 33 H 1.08999 * 111.02430 * 337.30518 * 5 3 2 34 34 H 1.08988 * 111.12671 * 276.21402 * 6 5 3 35 35 H 1.08996 * 111.15778 * 152.06244 * 6 5 3 36 36 H 0.97001 * 119.99634 * 354.84357 * 11 9 7 37 37 H 1.07995 * 120.25038 * 359.96257 * 13 12 11 38 38 H 1.08002 * 120.65890 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.42953 * 179.97438 * 15 14 13 40 40 H 0.97007 * 120.00091 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9913 -0.8308 5 6 3.5786 1.4540 -0.1266 6 6 3.9797 2.6071 0.8334 7 6 2.8992 2.4622 1.9345 8 1 3.1872 1.6899 2.6480 9 6 2.6942 3.7767 2.6424 10 8 1.6304 4.3523 2.5561 11 7 3.6933 4.3125 3.3713 12 6 3.5401 5.5739 3.9415 13 6 4.6192 6.1687 4.5992 14 6 4.4651 7.4248 5.1658 15 6 3.2373 8.0539 5.0613 16 6 2.1900 7.4029 4.3866 17 6 0.9298 8.0326 4.2721 18 1 0.7742 9.0111 4.7020 19 6 -0.1167 7.3879 3.6015 20 7 0.0720 6.2036 3.0807 21 14 -1.7819 8.2205 3.4496 22 1 -1.8175 9.0332 2.2072 23 1 -2.8484 7.1885 3.3966 24 1 -2.0037 9.1018 4.6240 25 7 2.3796 6.1937 3.8487 26 8 1.7028 2.0790 1.2380 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8820 1.6775 -1.1494 33 1 4.0053 0.5073 0.2047 34 1 3.9074 3.5746 0.3370 35 1 4.9787 2.4507 1.2404 36 1 4.5174 3.8179 3.5021 37 1 5.5663 5.6541 4.6661 38 1 5.2870 7.9024 5.6784 39 1 3.0856 9.0324 5.4926 40 1 -0.6529 5.7572 2.6157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:44 Heat of formation + Delta-G solvation = -30.010802 kcal Electronic energy + Delta-G solvation = -23373.051425 eV Core-core repulsion = 19960.479666 eV Total energy + Delta-G solvation = -3412.571759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.03084 -38.69631 -37.13684 -34.08607 -33.48555 -33.01252 -32.04092 -30.29741 -29.46105 -28.12132 -25.53418 -24.29002 -22.13701 -21.72143 -21.24071 -20.65599 -19.23892 -17.80358 -17.14805 -16.40444 -15.80673 -15.40779 -14.63378 -14.43350 -14.25383 -14.18132 -13.94308 -13.57955 -13.22504 -12.98627 -12.93592 -12.74354 -12.10837 -11.90047 -11.80574 -11.69772 -11.43013 -11.11946 -10.96524 -10.91664 -10.88834 -10.70481 -10.62023 -10.43879 -9.90227 -9.64850 -9.56154 -8.98409 -8.72733 -7.93957 -7.16160 -6.93987 -6.09536 -4.36746 2.80615 3.09933 3.20947 3.23319 3.29624 3.42638 3.73045 4.10234 4.20631 4.46167 4.61099 4.90313 4.98030 5.06528 5.09992 5.15956 5.31850 5.44537 5.50464 5.62194 5.73153 5.77831 5.86086 5.90527 6.03309 6.07850 6.13695 6.22058 6.32669 6.50778 6.69357 6.85081 6.87395 7.13366 7.27768 7.58585 7.65963 7.83622 8.09204 8.23620 8.49181 8.78230 9.08139 9.31349 10.27921 10.52680 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014922 B = 0.005423 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.028635 B = 5162.323203 C = 6831.233459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.076 3.924 4 H 0.079 0.921 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.066 3.934 8 H 0.084 0.916 9 C 0.466 3.534 10 O -0.386 6.386 11 N -0.665 5.665 12 C 0.373 3.627 13 C -0.358 4.358 14 C -0.036 4.036 15 C -0.306 4.306 16 C 0.271 3.729 17 C -0.425 4.425 18 H 0.082 0.918 19 C 0.057 3.943 20 N -0.653 5.653 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.264 1.264 25 N -0.474 5.474 26 O -0.341 6.341 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.397 0.603 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.949 -11.872 -6.486 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.018 3.982 4 H 0.097 0.903 5 C -0.187 4.187 6 C -0.183 4.183 7 C 0.004 3.996 8 H 0.102 0.898 9 C 0.246 3.754 10 O -0.247 6.247 11 N -0.314 5.314 12 C 0.135 3.865 13 C -0.384 4.384 14 C -0.060 4.060 15 C -0.329 4.329 16 C 0.146 3.854 17 C -0.455 4.455 18 H 0.100 0.900 19 C -0.173 4.173 20 N -0.272 5.272 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.188 1.188 25 N -0.193 5.193 26 O -0.260 6.260 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.230 0.770 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.024 -12.019 -7.119 14.537 hybrid contribution 0.798 0.366 0.377 0.955 sum 4.822 -11.652 -6.743 14.300 Atomic orbital electron populations 1.21711 0.95236 1.01097 1.02725 1.21889 0.97137 0.95785 1.01996 1.22830 0.94029 0.93393 0.87931 0.90280 1.23172 0.95550 0.99140 1.00829 1.23220 0.98904 1.00036 0.96100 1.22851 0.85952 0.95753 0.95013 0.89793 1.20503 0.86017 0.86961 0.81883 1.91163 1.22001 1.57585 1.53951 1.43328 1.18355 1.17420 1.52249 1.18599 0.91601 0.85105 0.91233 1.20470 0.98368 1.00655 1.18895 1.20555 0.95923 0.93687 0.95883 1.21617 0.95494 1.02265 1.13561 1.18383 0.92392 0.87275 0.87384 1.19590 0.93760 1.02737 1.29432 0.89959 1.26183 1.00238 0.95180 0.95676 1.70293 1.31156 1.08712 1.17014 0.86524 0.82177 0.79839 0.79470 1.19677 1.20281 1.18771 1.68704 1.17461 1.09801 1.23383 1.88586 1.27431 1.77600 1.32343 0.91615 0.92905 0.93175 0.91339 0.91605 0.90016 0.90345 0.89733 0.89450 0.76954 0.89128 0.88660 0.88596 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.83 37.16 0.37 -1.31 16 2 C -0.13 -1.35 5.51 -26.73 -0.15 -1.50 16 3 C 0.08 0.95 3.51 -26.01 -0.09 0.86 16 4 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 5 C -0.15 -1.46 6.54 -24.78 -0.16 -1.63 16 6 C -0.14 -1.71 6.55 -24.48 -0.16 -1.87 16 7 C 0.07 1.02 3.86 -26.86 -0.10 0.91 16 8 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 9 C 0.47 9.75 7.15 -10.98 -0.08 9.67 16 10 O -0.39 -10.25 12.32 -13.78 -0.17 -10.42 16 11 N -0.66 -13.19 5.37 -11.40 -0.06 -13.25 16 12 C 0.37 9.23 7.43 -154.98 -1.15 8.07 16 13 C -0.36 -8.09 9.96 -38.89 -0.39 -8.48 16 14 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 15 C -0.31 -7.83 9.83 -38.66 -0.38 -8.21 16 16 C 0.27 7.74 6.55 -85.00 -0.56 7.19 16 17 C -0.42 -11.92 9.14 -37.74 -0.34 -12.27 16 18 H 0.08 2.16 7.85 -52.49 -0.41 1.74 16 19 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 20 N -0.65 -18.71 9.00 55.55 0.50 -18.21 16 21 Si 0.90 19.77 29.56 -169.99 -5.02 14.74 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 25 N -0.47 -13.59 5.74 -10.26 -0.06 -13.65 16 26 O -0.34 -5.83 9.91 -54.58 -0.54 -6.37 16 27 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.63 7.86 -51.93 -0.41 0.23 16 34 H 0.08 1.16 8.05 -51.94 -0.42 0.74 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.40 5.94 8.70 -40.82 -0.36 5.59 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 40 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -34.16 332.64 -9.82 -43.98 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.79 Total: 6.51 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.69 Total: -8.35 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.38 Total: -45.11 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.71 Total: -16.78 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.16 -9.82 -43.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.974 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds