Wall clock time and date at job start Tue Mar 31 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47247 * 2 1 4 4 H 1.09003 * 109.82011 * 305.88340 * 3 2 1 5 5 C 1.54381 * 109.83120 * 184.99961 * 3 2 1 6 6 C 1.55310 * 102.25405 * 219.03323 * 5 3 2 7 7 C 1.54945 * 100.93644 * 34.13325 * 6 5 3 8 8 H 1.09007 * 110.31167 * 82.57288 * 7 6 5 9 9 C 1.50701 * 110.30656 * 204.63681 * 7 6 5 10 10 O 1.21268 * 119.99758 * 115.00256 * 9 7 6 11 11 N 1.34781 * 120.00069 * 295.00302 * 9 7 6 12 12 C 1.39270 * 119.99790 * 175.12314 * 11 9 7 13 13 C 1.39673 * 119.57249 * 185.37088 * 12 11 9 14 14 C 1.38658 * 119.49338 * 179.97438 * 13 12 11 15 15 C 1.38346 * 118.66849 * 0.02562 * 14 13 12 16 16 C 1.40571 * 119.13291 * 359.97438 * 15 14 13 17 17 C 1.41339 * 119.79130 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99155 * 0.02562 * 17 16 15 19 19 C 1.40018 * 120.00380 * 180.02562 * 17 16 15 20 20 N 1.30742 * 119.99990 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00131 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47130 * 89.99941 * 21 19 17 23 23 H 1.48506 * 109.47170 * 209.99669 * 21 19 17 24 24 H 1.48498 * 109.47133 * 330.00032 * 21 19 17 25 25 N 1.31898 * 119.57626 * 5.09751 * 12 11 9 26 26 O 1.43233 * 109.90764 * 66.81924 * 3 2 1 27 27 H 1.09002 * 109.47132 * 300.00724 * 1 2 3 28 28 H 1.08998 * 109.46821 * 60.00070 * 1 2 3 29 29 H 1.08994 * 109.47025 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47482 * 239.99470 * 2 1 3 31 31 H 1.09001 * 109.47002 * 119.99425 * 2 1 3 32 32 H 1.09007 * 110.84873 * 100.84630 * 5 3 2 33 33 H 1.08999 * 111.02430 * 337.30518 * 5 3 2 34 34 H 1.08988 * 111.12671 * 276.21402 * 6 5 3 35 35 H 1.08996 * 111.15778 * 152.06244 * 6 5 3 36 36 H 0.97001 * 119.99634 * 354.84357 * 11 9 7 37 37 H 1.07995 * 120.25038 * 359.96257 * 13 12 11 38 38 H 1.08002 * 120.65890 * 180.02562 * 14 13 12 39 39 H 1.08003 * 120.42953 * 179.97438 * 15 14 13 40 40 H 0.97007 * 120.00091 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9913 -0.8308 5 6 3.5786 1.4540 -0.1266 6 6 3.9797 2.6071 0.8334 7 6 2.8992 2.4622 1.9345 8 1 3.1872 1.6899 2.6480 9 6 2.6942 3.7767 2.6424 10 8 1.6304 4.3523 2.5561 11 7 3.6933 4.3125 3.3713 12 6 3.5401 5.5739 3.9415 13 6 4.6192 6.1687 4.5992 14 6 4.4651 7.4248 5.1658 15 6 3.2373 8.0539 5.0613 16 6 2.1900 7.4029 4.3866 17 6 0.9298 8.0326 4.2721 18 1 0.7742 9.0111 4.7020 19 6 -0.1167 7.3879 3.6015 20 7 0.0720 6.2036 3.0807 21 14 -1.7819 8.2205 3.4496 22 1 -1.8175 9.0332 2.2072 23 1 -2.8484 7.1885 3.3966 24 1 -2.0037 9.1018 4.6240 25 7 2.3796 6.1937 3.8487 26 8 1.7028 2.0790 1.2380 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8820 1.6775 -1.1494 33 1 4.0053 0.5073 0.2047 34 1 3.9074 3.5746 0.3370 35 1 4.9787 2.4507 1.2404 36 1 4.5174 3.8179 3.5021 37 1 5.5663 5.6541 4.6661 38 1 5.2870 7.9024 5.6784 39 1 3.0856 9.0324 5.4926 40 1 -0.6529 5.7572 2.6157 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:44 Heat of formation + Delta-G solvation = -51.518209 kcal Electronic energy + Delta-G solvation = -23373.984056 eV Core-core repulsion = 19960.479666 eV Total energy + Delta-G solvation = -3413.504390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37517 -40.27198 -38.86118 -35.93121 -34.88028 -34.45015 -33.11220 -32.23095 -31.15310 -29.42751 -27.45204 -25.49132 -23.72254 -23.06358 -22.69950 -21.82147 -20.79844 -19.61021 -18.41400 -18.10153 -17.24229 -16.63588 -16.42064 -16.26062 -15.73791 -15.53539 -15.37058 -14.95650 -14.67763 -14.40295 -14.07162 -13.90669 -13.77732 -13.68398 -12.97352 -12.86099 -12.74283 -12.71928 -12.56856 -12.38325 -12.32202 -11.84757 -11.78741 -11.77470 -11.58716 -11.49035 -10.87738 -10.79228 -10.29635 -9.90590 -9.05918 -8.82642 -8.05511 -6.43243 0.91345 1.25093 1.36890 1.49471 1.52008 2.05712 2.11127 2.24620 2.97522 3.04822 3.48761 3.73711 3.80468 4.03844 4.07432 4.16311 4.23674 4.33392 4.41925 4.46933 4.56927 4.75292 4.84198 4.86493 4.89427 4.96050 4.96508 5.01482 5.06164 5.07239 5.15016 5.26567 5.35604 5.42282 5.68061 5.85146 5.92405 6.06965 6.16495 6.38211 6.74072 6.85801 7.07077 7.70759 8.35150 8.55643 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014922 B = 0.005423 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.028635 B = 5162.323203 C = 6831.233459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.063 3.937 4 H 0.064 0.936 5 C -0.134 4.134 6 C -0.138 4.138 7 C 0.073 3.927 8 H 0.116 0.884 9 C 0.455 3.545 10 O -0.452 6.452 11 N -0.649 5.649 12 C 0.348 3.652 13 C -0.342 4.342 14 C -0.034 4.034 15 C -0.330 4.330 16 C 0.236 3.764 17 C -0.468 4.468 18 H 0.087 0.913 19 C 0.009 3.991 20 N -0.692 5.692 21 Si 0.974 3.026 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.252 1.252 25 N -0.512 5.512 26 O -0.383 6.383 27 H 0.032 0.968 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.422 0.578 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.104 0.896 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.451 -13.563 -6.875 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C 0.006 3.994 4 H 0.082 0.918 5 C -0.172 4.172 6 C -0.176 4.176 7 C 0.012 3.988 8 H 0.134 0.866 9 C 0.238 3.762 10 O -0.317 6.317 11 N -0.300 5.300 12 C 0.109 3.891 13 C -0.367 4.367 14 C -0.059 4.059 15 C -0.353 4.353 16 C 0.111 3.889 17 C -0.499 4.499 18 H 0.105 0.895 19 C -0.216 4.216 20 N -0.311 5.311 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.176 1.176 25 N -0.231 5.231 26 O -0.302 6.302 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.260 0.740 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.122 0.878 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.600 -13.744 -7.504 16.993 hybrid contribution 0.209 0.839 0.530 1.014 sum 6.809 -12.905 -6.974 16.172 Atomic orbital electron populations 1.21720 0.96468 1.01743 1.01013 1.21876 0.96051 0.94498 1.03646 1.23100 0.96452 0.94103 0.85792 0.91757 1.23173 0.92967 0.99539 1.01480 1.23240 0.99432 0.99757 0.95180 1.22897 0.86806 0.92886 0.96245 0.86639 1.21670 0.85078 0.88376 0.81032 1.91155 1.24544 1.59884 1.56092 1.43277 1.19408 1.16042 1.51309 1.19175 0.91468 0.86739 0.91705 1.20989 0.99284 1.00344 1.16114 1.21057 0.96010 0.93725 0.95066 1.21810 0.96269 1.03019 1.14224 1.18880 0.93672 0.88066 0.88290 1.19914 0.94900 1.03525 1.31522 0.89533 1.27069 1.04073 0.95659 0.94777 1.70532 1.31883 1.10364 1.18352 0.85341 0.76756 0.78634 0.79786 1.19005 1.20077 1.17590 1.68666 1.19826 1.10310 1.24330 1.88567 1.29137 1.78299 1.34214 0.94911 0.93076 0.91296 0.88278 0.91066 0.88147 0.87353 0.92340 0.85738 0.74037 0.84641 0.84346 0.87760 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.83 71.98 0.71 -2.63 16 2 C -0.12 -2.29 5.51 30.59 0.17 -2.12 16 3 C 0.06 1.49 3.51 31.06 0.11 1.60 16 4 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 5 C -0.13 -2.16 6.54 31.86 0.21 -1.95 16 6 C -0.14 -2.92 6.55 32.05 0.21 -2.71 16 7 C 0.07 2.16 3.86 30.51 0.12 2.28 16 8 H 0.12 2.70 8.14 -2.38 -0.02 2.68 16 9 C 0.46 19.40 7.15 87.66 0.63 20.03 16 10 O -0.45 -25.38 12.32 15.51 0.19 -25.19 16 11 N -0.65 -25.29 5.37 -308.37 -1.65 -26.95 16 12 C 0.35 17.18 7.43 133.25 0.99 18.17 16 13 C -0.34 -14.62 9.96 22.72 0.23 -14.40 16 14 C -0.03 -1.51 10.15 22.40 0.23 -1.28 16 15 C -0.33 -17.05 9.83 22.86 0.22 -16.82 16 16 C 0.24 14.09 6.55 40.19 0.26 14.35 16 17 C -0.47 -27.60 9.14 23.46 0.21 -27.38 16 18 H 0.09 4.76 7.85 -2.91 -0.02 4.74 16 19 C 0.01 0.53 5.50 85.29 0.47 1.00 16 20 N -0.69 -42.24 9.00 21.83 0.20 -42.04 16 21 Si 0.97 42.66 29.56 68.60 2.03 44.69 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 25 N -0.51 -30.45 5.74 -186.36 -1.07 -31.51 16 26 O -0.38 -13.26 9.91 -130.48 -1.29 -14.55 16 27 H 0.03 0.91 7.90 -2.39 -0.02 0.89 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.11 1.16 7.86 -2.39 -0.02 1.14 16 34 H 0.06 1.55 8.05 -2.39 -0.02 1.53 16 35 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.42 11.49 8.70 -92.71 -0.81 10.68 16 37 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 38 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 39 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 40 H 0.27 15.67 8.29 -92.70 -0.77 14.91 16 Total: -1.00 -81.98 332.64 3.40 -78.58 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.24 Total: 28.83 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 4.76 Total: -11.86 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -2.53 Total: -100.50 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.10 Total: -39.74 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -81.98 3.40 -78.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.061 kcal (2) G-P(sol) polarization free energy of solvation -81.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds