Wall clock time and date at job start Tue Mar 31 2020 06:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46508 * 2 1 4 4 H 1.08998 * 110.32857 * 304.20150 * 3 2 1 5 5 C 1.54476 * 110.46144 * 181.88969 * 3 2 1 6 6 C 1.54691 * 104.07830 * 217.04889 * 5 3 2 7 7 C 1.54478 * 103.97497 * 0.13571 * 6 5 3 8 8 H 1.09004 * 110.37441 * 264.96578 * 7 6 5 9 9 C 1.50706 * 110.37262 * 142.74201 * 7 6 5 10 10 O 1.21266 * 119.99700 * 246.54921 * 9 7 6 11 11 N 1.34777 * 119.99886 * 66.54518 * 9 7 6 12 12 C 1.39268 * 119.99777 * 175.14395 * 11 9 7 13 13 C 1.39667 * 119.57479 * 185.39417 * 12 11 9 14 14 C 1.38659 * 119.49438 * 179.97438 * 13 12 11 15 15 C 1.38345 * 118.67026 * 359.97438 * 14 13 12 16 16 C 1.40580 * 119.13076 * 0.02562 * 15 14 13 17 17 C 1.41333 * 119.78726 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99774 * 0.02562 * 17 16 15 19 19 C 1.40027 * 119.99780 * 180.02562 * 17 16 15 20 20 N 1.30740 * 120.00026 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99775 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47278 * 59.99495 * 21 19 17 23 23 H 1.48497 * 109.47224 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46718 * 299.99630 * 21 19 17 25 25 N 1.31911 * 119.57424 * 5.11137 * 12 11 9 26 26 O 1.44416 * 104.90426 * 23.85204 * 7 6 5 27 27 H 1.09001 * 109.46474 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47409 * 299.99914 * 1 2 3 29 29 H 1.08997 * 109.47316 * 60.00749 * 1 2 3 30 30 H 1.08995 * 109.47218 * 239.99681 * 2 1 3 31 31 H 1.09003 * 109.46903 * 119.99246 * 2 1 3 32 32 H 1.08996 * 110.51541 * 335.78431 * 5 3 2 33 33 H 1.08995 * 110.51387 * 98.35990 * 5 3 2 34 34 H 1.08997 * 110.60942 * 241.49104 * 6 5 3 35 35 H 1.08996 * 110.48795 * 118.72392 * 6 5 3 36 36 H 0.97002 * 119.99974 * 354.85884 * 11 9 7 37 37 H 1.07998 * 120.25421 * 359.95186 * 13 12 11 38 38 H 1.08001 * 120.66291 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.43452 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99856 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6244 1.9911 -0.8453 5 6 3.5837 1.4697 -0.0477 6 6 3.9672 2.6637 0.8580 7 6 2.6086 3.2125 1.3471 8 1 2.2792 4.0332 0.7098 9 6 2.7126 3.6708 2.7790 10 8 2.1037 3.0850 3.6488 11 7 3.4825 4.7315 3.0928 12 6 3.4999 5.2176 4.3978 13 6 4.2109 6.3837 4.6896 14 6 4.2267 6.8664 5.9894 15 6 3.5316 6.1724 6.9636 16 6 2.8350 5.0047 6.6066 17 6 2.1208 4.2845 7.5909 18 1 2.1111 4.6320 8.6134 19 6 1.4258 3.1206 7.2402 20 7 1.4373 2.7003 6.0023 21 14 0.4813 2.1691 8.5410 22 1 -0.5611 3.0442 9.1351 23 1 -0.1632 0.9852 7.9180 24 1 1.4168 1.7219 9.6040 25 7 2.8400 4.5736 5.3412 26 8 1.6975 2.0970 1.2411 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.9945 0.5410 0.3482 33 1 3.9314 1.6359 -1.0673 34 1 4.5022 3.4223 0.2867 35 1 4.5684 2.3248 1.7017 36 1 4.0276 5.1539 2.4106 37 1 4.7447 6.9054 3.9090 38 1 4.7700 7.7667 6.2361 39 1 3.5243 6.5231 7.9851 40 1 0.9555 1.8942 5.7593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:49 Heat of formation + Delta-G solvation = -29.490001 kcal Electronic energy + Delta-G solvation = -23374.300466 eV Core-core repulsion = 19961.751291 eV Total energy + Delta-G solvation = -3412.549175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.99217 -38.67970 -37.13787 -34.09084 -33.53655 -33.01147 -31.98512 -30.29856 -29.45206 -28.08297 -25.53780 -24.32961 -22.11508 -21.59880 -21.08775 -20.95563 -19.28322 -17.78427 -16.59809 -16.36054 -16.21307 -15.57249 -14.62796 -14.42555 -14.33818 -13.94069 -13.66251 -13.62098 -13.47427 -13.19326 -12.96839 -12.74587 -12.11082 -11.92079 -11.67542 -11.60561 -11.39830 -11.08948 -10.94720 -10.93018 -10.75210 -10.64785 -10.63323 -10.43544 -9.92122 -9.74166 -9.61939 -8.98379 -8.80362 -7.94130 -7.17072 -6.94486 -6.09569 -4.36860 2.80847 3.10483 3.20608 3.21854 3.29957 3.41477 3.74247 4.10243 4.24838 4.52718 4.68230 4.88801 4.95449 5.06156 5.07932 5.20737 5.29253 5.41987 5.58685 5.61045 5.69735 5.79450 5.89495 5.96416 6.04766 6.07368 6.12900 6.16804 6.34072 6.50579 6.68182 6.83131 6.87211 6.96431 7.27546 7.58101 7.65406 7.83481 8.08269 8.23221 8.48396 8.77913 9.07846 9.29904 10.27605 10.52680 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.005560 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.761543 B = 5034.427972 C = 6759.951641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.070 3.930 4 H 0.067 0.933 5 C -0.148 4.148 6 C -0.145 4.145 7 C 0.059 3.941 8 H 0.083 0.917 9 C 0.472 3.528 10 O -0.385 6.385 11 N -0.665 5.665 12 C 0.373 3.627 13 C -0.358 4.358 14 C -0.036 4.036 15 C -0.306 4.306 16 C 0.271 3.729 17 C -0.425 4.425 18 H 0.082 0.918 19 C 0.057 3.943 20 N -0.654 5.654 21 Si 0.896 3.104 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.267 1.267 25 N -0.475 5.475 26 O -0.334 6.334 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.398 0.602 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 -3.062 -14.058 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C 0.012 3.988 4 H 0.084 0.916 5 C -0.186 4.186 6 C -0.183 4.183 7 C -0.003 4.003 8 H 0.101 0.899 9 C 0.252 3.748 10 O -0.246 6.246 11 N -0.313 5.313 12 C 0.135 3.865 13 C -0.384 4.384 14 C -0.060 4.060 15 C -0.329 4.329 16 C 0.146 3.854 17 C -0.455 4.455 18 H 0.100 0.900 19 C -0.173 4.173 20 N -0.272 5.272 21 Si 0.720 3.280 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.192 1.192 25 N -0.194 5.194 26 O -0.252 6.252 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.231 0.769 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.389 -4.598 -13.622 14.444 hybrid contribution 0.610 0.787 0.117 1.002 sum 1.999 -3.812 -13.505 14.174 Atomic orbital electron populations 1.21725 0.95236 1.01420 1.02473 1.21561 0.96884 0.94346 1.02520 1.23078 0.93532 0.94342 0.87881 0.91551 1.23008 0.96174 0.99313 1.00124 1.22931 0.97079 0.98085 1.00200 1.22883 0.90069 0.91273 0.96043 0.89902 1.20269 0.82607 0.82270 0.89654 1.91168 1.37631 1.49237 1.46550 1.43303 1.46151 1.32403 1.09475 1.18591 0.93065 0.89689 0.85197 1.20466 1.17313 1.03132 0.97458 1.20555 0.96016 0.96778 0.92691 1.21618 1.10580 1.02294 0.98418 1.18374 0.89312 0.88718 0.89018 1.19557 1.24735 1.06005 0.95215 0.89992 1.26181 0.97114 0.98117 0.95852 1.70278 1.25140 1.16332 1.15451 0.86584 0.80318 0.79453 0.81634 1.19178 1.20363 1.19193 1.68702 1.21216 1.30044 0.99393 1.89318 1.54942 1.41686 1.39241 0.92926 0.91521 0.93100 0.91013 0.90893 0.90439 0.90598 0.90032 0.90029 0.76911 0.89114 0.88645 0.88586 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.83 37.16 0.37 -1.33 16 2 C -0.12 -1.28 5.58 -26.73 -0.15 -1.43 16 3 C 0.07 0.85 3.27 -25.95 -0.08 0.76 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 5 C -0.15 -1.55 6.64 -25.07 -0.17 -1.72 16 6 C -0.14 -1.74 6.63 -25.07 -0.17 -1.91 16 7 C 0.06 0.92 3.71 -27.10 -0.10 0.82 16 8 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 9 C 0.47 9.92 7.03 -10.98 -0.08 9.84 16 10 O -0.38 -10.24 12.33 -13.64 -0.17 -10.41 16 11 N -0.66 -13.24 5.38 -11.40 -0.06 -13.30 16 12 C 0.37 9.24 7.43 -154.98 -1.15 8.09 16 13 C -0.36 -8.11 9.96 -38.89 -0.39 -8.49 16 14 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 15 C -0.31 -7.82 9.83 -38.66 -0.38 -8.20 16 16 C 0.27 7.75 6.55 -85.00 -0.56 7.19 16 17 C -0.42 -11.92 9.14 -37.74 -0.34 -12.26 16 18 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 19 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 20 N -0.65 -18.72 9.00 55.55 0.50 -18.22 16 21 Si 0.90 19.77 29.56 -169.99 -5.02 14.74 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 N -0.47 -13.61 5.74 -10.26 -0.06 -13.66 16 26 O -0.33 -5.74 10.26 -54.44 -0.56 -6.30 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.92 7.91 -51.93 -0.41 0.51 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.12 7.86 -51.93 -0.41 0.72 16 36 H 0.40 5.98 8.70 -40.82 -0.36 5.63 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.27 7.49 8.29 -40.82 -0.34 7.15 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -34.14 332.61 -9.83 -43.97 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.78 Total: 6.59 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -3.69 Total: -8.43 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.38 Total: -45.19 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.73 Total: -16.70 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.14 -9.83 -43.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.483 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds