Wall clock time and date at job start Tue Mar 31 2020 06:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46508 * 2 1 4 4 H 1.08998 * 110.32857 * 304.20150 * 3 2 1 5 5 C 1.54476 * 110.46144 * 181.88969 * 3 2 1 6 6 C 1.54691 * 104.07830 * 217.04889 * 5 3 2 7 7 C 1.54478 * 103.97497 * 0.13571 * 6 5 3 8 8 H 1.09004 * 110.37441 * 264.96578 * 7 6 5 9 9 C 1.50706 * 110.37262 * 142.74201 * 7 6 5 10 10 O 1.21266 * 119.99700 * 246.54921 * 9 7 6 11 11 N 1.34777 * 119.99886 * 66.54518 * 9 7 6 12 12 C 1.39268 * 119.99777 * 175.14395 * 11 9 7 13 13 C 1.39667 * 119.57479 * 185.39417 * 12 11 9 14 14 C 1.38659 * 119.49438 * 179.97438 * 13 12 11 15 15 C 1.38345 * 118.67026 * 359.97438 * 14 13 12 16 16 C 1.40580 * 119.13076 * 0.02562 * 15 14 13 17 17 C 1.41333 * 119.78726 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99774 * 0.02562 * 17 16 15 19 19 C 1.40027 * 119.99780 * 180.02562 * 17 16 15 20 20 N 1.30740 * 120.00026 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99775 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47278 * 59.99495 * 21 19 17 23 23 H 1.48497 * 109.47224 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46718 * 299.99630 * 21 19 17 25 25 N 1.31911 * 119.57424 * 5.11137 * 12 11 9 26 26 O 1.44416 * 104.90426 * 23.85204 * 7 6 5 27 27 H 1.09001 * 109.46474 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47409 * 299.99914 * 1 2 3 29 29 H 1.08997 * 109.47316 * 60.00749 * 1 2 3 30 30 H 1.08995 * 109.47218 * 239.99681 * 2 1 3 31 31 H 1.09003 * 109.46903 * 119.99246 * 2 1 3 32 32 H 1.08996 * 110.51541 * 335.78431 * 5 3 2 33 33 H 1.08995 * 110.51387 * 98.35990 * 5 3 2 34 34 H 1.08997 * 110.60942 * 241.49104 * 6 5 3 35 35 H 1.08996 * 110.48795 * 118.72392 * 6 5 3 36 36 H 0.97002 * 119.99974 * 354.85884 * 11 9 7 37 37 H 1.07998 * 120.25421 * 359.95186 * 13 12 11 38 38 H 1.08001 * 120.66291 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.43452 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99856 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6244 1.9911 -0.8453 5 6 3.5837 1.4697 -0.0477 6 6 3.9672 2.6637 0.8580 7 6 2.6086 3.2125 1.3471 8 1 2.2792 4.0332 0.7098 9 6 2.7126 3.6708 2.7790 10 8 2.1037 3.0850 3.6488 11 7 3.4825 4.7315 3.0928 12 6 3.4999 5.2176 4.3978 13 6 4.2109 6.3837 4.6896 14 6 4.2267 6.8664 5.9894 15 6 3.5316 6.1724 6.9636 16 6 2.8350 5.0047 6.6066 17 6 2.1208 4.2845 7.5909 18 1 2.1111 4.6320 8.6134 19 6 1.4258 3.1206 7.2402 20 7 1.4373 2.7003 6.0023 21 14 0.4813 2.1691 8.5410 22 1 -0.5611 3.0442 9.1351 23 1 -0.1632 0.9852 7.9180 24 1 1.4168 1.7219 9.6040 25 7 2.8400 4.5736 5.3412 26 8 1.6975 2.0970 1.2411 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.9945 0.5410 0.3482 33 1 3.9314 1.6359 -1.0673 34 1 4.5022 3.4223 0.2867 35 1 4.5684 2.3248 1.7017 36 1 4.0276 5.1539 2.4106 37 1 4.7447 6.9054 3.9090 38 1 4.7700 7.7667 6.2361 39 1 3.5243 6.5231 7.9851 40 1 0.9555 1.8942 5.7593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:49 Heat of formation + Delta-G solvation = -51.057259 kcal Electronic energy + Delta-G solvation = -23375.235693 eV Core-core repulsion = 19961.751291 eV Total energy + Delta-G solvation = -3413.484402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35972 -40.24219 -38.85805 -35.93878 -34.88662 -34.51937 -33.06450 -32.23397 -31.15623 -29.38581 -27.45119 -25.54040 -23.70392 -23.04793 -22.64115 -21.89154 -20.91810 -19.62530 -18.11210 -17.87274 -17.44032 -16.88141 -16.40556 -16.26219 -15.74871 -15.44572 -15.40800 -14.78717 -14.65163 -14.49748 -14.24930 -14.04621 -13.86323 -13.70451 -12.91013 -12.76023 -12.73416 -12.62886 -12.58145 -12.36535 -12.32819 -11.87185 -11.80352 -11.70510 -11.50529 -11.48601 -10.87512 -10.84580 -10.45361 -9.90940 -9.07535 -8.83491 -8.05591 -6.43404 0.91224 1.25085 1.36747 1.49475 1.51337 2.01422 2.12908 2.24638 2.97750 3.10779 3.53149 3.66479 3.93439 3.98209 4.04905 4.18957 4.23505 4.33053 4.38245 4.42099 4.61939 4.72998 4.76725 4.87671 4.90432 4.93826 4.95849 5.03962 5.06086 5.07417 5.16682 5.24664 5.26394 5.41786 5.67601 5.83579 5.91464 5.95025 6.13983 6.37371 6.73026 6.84796 7.06600 7.68767 8.34553 8.55425 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.005560 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.761543 B = 5034.427972 C = 6759.951641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.061 3.939 4 H 0.089 0.911 5 C -0.140 4.140 6 C -0.138 4.138 7 C 0.067 3.933 8 H 0.115 0.885 9 C 0.461 3.539 10 O -0.450 6.450 11 N -0.650 5.650 12 C 0.348 3.652 13 C -0.342 4.342 14 C -0.034 4.034 15 C -0.330 4.330 16 C 0.236 3.764 17 C -0.468 4.468 18 H 0.087 0.913 19 C 0.010 3.990 20 N -0.692 5.692 21 Si 0.974 3.026 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.257 1.257 25 N -0.512 5.512 26 O -0.380 6.380 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.422 0.578 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.020 -2.239 -16.566 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.004 3.996 4 H 0.107 0.893 5 C -0.178 4.178 6 C -0.176 4.176 7 C 0.005 3.995 8 H 0.132 0.868 9 C 0.244 3.756 10 O -0.315 6.315 11 N -0.300 5.300 12 C 0.109 3.891 13 C -0.368 4.368 14 C -0.058 4.058 15 C -0.353 4.353 16 C 0.111 3.889 17 C -0.499 4.499 18 H 0.105 0.895 19 C -0.216 4.216 20 N -0.311 5.311 21 Si 0.795 3.205 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.181 1.181 25 N -0.231 5.231 26 O -0.299 6.299 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.074 0.926 36 H 0.260 0.740 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.123 0.877 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.794 -3.737 -16.185 16.844 hybrid contribution 0.297 0.667 0.767 1.059 sum 3.091 -3.070 -15.417 16.021 Atomic orbital electron populations 1.21708 0.95701 1.01885 1.01425 1.21620 0.96519 0.94174 1.02997 1.23413 0.95061 0.94557 0.86597 0.89310 1.23022 0.94631 0.98326 1.01813 1.22962 0.94831 0.99767 1.00051 1.22911 0.92271 0.92153 0.92129 0.86753 1.21411 0.81072 0.81362 0.91757 1.91160 1.40077 1.51187 1.49082 1.43252 1.46179 1.32195 1.08418 1.19167 0.92981 0.90552 0.86410 1.20984 1.15384 1.01828 0.98562 1.21057 0.94987 0.97612 0.92191 1.21813 1.11474 1.02191 0.99791 1.18878 0.90281 0.90120 0.89644 1.19892 1.26749 1.07529 0.95684 0.89493 1.27071 0.97690 0.98722 0.98091 1.70520 1.26461 1.16564 1.17574 0.85401 0.78854 0.77726 0.78562 1.18271 1.20189 1.18140 1.68666 1.22687 1.31662 1.00112 1.89306 1.55967 1.42634 1.41985 0.91773 0.95173 0.91425 0.87580 0.93214 0.90978 0.86705 0.85891 0.92564 0.74022 0.84662 0.84325 0.87720 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.83 71.98 0.71 -2.61 16 2 C -0.12 -2.43 5.58 30.60 0.17 -2.26 16 3 C 0.06 1.36 3.27 31.10 0.10 1.46 16 4 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 5 C -0.14 -2.49 6.64 31.67 0.21 -2.28 16 6 C -0.14 -2.96 6.63 31.67 0.21 -2.75 16 7 C 0.07 2.00 3.71 30.35 0.11 2.11 16 8 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 9 C 0.46 19.75 7.03 87.66 0.62 20.37 16 10 O -0.45 -25.36 12.33 15.38 0.19 -25.17 16 11 N -0.65 -25.48 5.38 -308.37 -1.66 -27.14 16 12 C 0.35 17.23 7.43 133.25 0.99 18.22 16 13 C -0.34 -14.70 9.96 22.72 0.23 -14.47 16 14 C -0.03 -1.51 10.15 22.40 0.23 -1.28 16 15 C -0.33 -17.03 9.83 22.87 0.22 -16.81 16 16 C 0.24 14.09 6.55 40.19 0.26 14.35 16 17 C -0.47 -27.60 9.14 23.47 0.21 -27.38 16 18 H 0.09 4.77 7.85 -2.91 -0.02 4.75 16 19 C 0.01 0.54 5.50 85.29 0.47 1.01 16 20 N -0.69 -42.26 9.00 21.84 0.20 -42.07 16 21 Si 0.97 42.65 29.56 68.60 2.03 44.68 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 25 N -0.51 -30.50 5.74 -186.36 -1.07 -31.57 16 26 O -0.38 -13.17 10.26 -130.61 -1.34 -14.51 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.03 0.87 7.91 -2.39 -0.02 0.85 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.36 7.88 -2.39 -0.02 1.34 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.50 7.86 -2.39 -0.02 1.48 16 36 H 0.42 11.63 8.70 -92.71 -0.81 10.83 16 37 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 40 H 0.27 15.73 8.29 -92.71 -0.77 14.96 16 Total: -1.00 -82.05 332.61 3.33 -78.72 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.24 Total: 29.37 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 4.74 Total: -12.31 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -2.53 Total: -100.77 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.15 Total: -39.68 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -82.05 3.33 -78.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.660 kcal (2) G-P(sol) polarization free energy of solvation -82.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds