Wall clock time and date at job start Tue Mar 31 2020 06:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 C 1.53004 * 109.46825 * 185.00015 * 3 2 1 5 5 N 1.46498 * 109.46801 * 304.99599 * 3 2 1 6 6 C 1.34773 * 120.00506 * 300.00158 * 5 3 2 7 7 O 1.21588 * 119.99833 * 0.02562 * 6 5 3 8 8 C 1.47641 * 120.00572 * 180.02562 * 6 5 3 9 9 C 1.40016 * 119.89124 * 359.71830 * 8 6 5 10 10 C 1.36317 * 120.10684 * 179.76024 * 9 8 6 11 11 C 1.40889 * 119.88650 * 0.51976 * 10 9 8 12 12 C 1.41106 * 120.10074 * 179.71576 * 11 10 9 13 13 H 1.08003 * 120.00256 * 155.08699 * 12 11 10 14 14 C 1.40233 * 120.00004 * 335.08218 * 12 11 10 15 15 N 1.30645 * 120.00143 * 342.20969 * 14 12 11 16 16 Si 1.86800 * 119.99762 * 162.20797 * 14 12 11 17 17 H 1.48489 * 109.47497 * 94.66443 * 16 14 12 18 18 H 1.48506 * 109.46952 * 214.66702 * 16 14 12 19 19 H 1.48502 * 109.47172 * 334.66024 * 16 14 12 20 20 C 1.40890 * 119.79912 * 359.73908 * 11 10 9 21 21 C 1.36318 * 119.88832 * 0.02562 * 20 11 10 22 22 C 1.50697 * 109.47445 * 64.99700 * 3 2 1 23 23 N 1.34772 * 120.00362 * 204.99679 * 22 3 2 24 24 O 1.21285 * 119.99709 * 25.00160 * 22 3 2 25 25 H 1.09005 * 109.47250 * 300.00294 * 1 2 3 26 26 H 1.09002 * 109.47081 * 60.00092 * 1 2 3 27 27 H 1.09003 * 109.47363 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46883 * 119.99458 * 2 1 3 29 29 H 1.08994 * 109.46808 * 239.99556 * 2 1 3 30 30 H 1.08997 * 109.47248 * 59.99484 * 4 3 2 31 31 H 1.09000 * 109.46548 * 179.97438 * 4 3 2 32 32 H 1.09005 * 109.46769 * 299.99676 * 4 3 2 33 33 H 0.97001 * 119.99688 * 120.00363 * 5 3 2 34 34 H 1.07996 * 119.94406 * 0.03273 * 9 8 6 35 35 H 1.07994 * 120.05851 * 180.23573 * 10 9 8 36 36 H 0.96997 * 119.99922 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.05953 * 179.97438 * 20 11 10 38 38 H 1.08002 * 119.94938 * 179.97438 * 21 20 11 39 39 H 0.97004 * 119.99339 * 0.02562 * 23 22 3 40 40 H 0.96996 * 120.00650 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 7 1.4559 2.1669 -1.1315 6 6 1.6792 1.7426 -2.3910 7 8 2.3652 0.7582 -2.5883 8 6 1.0910 2.4729 -3.5314 9 6 0.2966 3.6027 -3.3014 10 6 -0.2446 4.2832 -4.3513 11 6 -0.0125 3.8415 -5.6689 12 6 -0.5755 4.5390 -6.7586 13 1 -0.1124 4.4833 -7.7328 14 6 -1.7364 5.3044 -6.5769 15 7 -2.4895 5.1097 -5.5273 16 14 -2.2058 6.6024 -7.8356 17 1 -3.1601 6.0213 -8.8136 18 1 -2.8428 7.7530 -7.1460 19 1 -0.9874 7.0649 -8.5476 20 6 0.7831 2.7009 -5.8950 21 6 1.3240 2.0298 -4.8389 22 6 1.6413 2.1163 1.2876 23 7 1.5145 3.4572 1.3354 24 8 1.4346 1.4519 2.2810 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 3.8532 0.9569 -1.0570 31 1 3.9281 2.4720 -0.1262 32 1 3.9994 0.9052 0.7162 33 1 0.9084 2.9520 -0.9741 34 1 0.1160 3.9381 -2.2909 35 1 -0.8541 5.1568 -4.1732 36 1 -3.2923 5.6394 -5.4015 37 1 0.9634 2.3584 -6.9032 38 1 1.9337 1.1551 -5.0111 39 1 1.6796 3.9885 0.5408 40 1 1.2576 3.8910 2.1640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888548859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:44 Heat of formation + Delta-G solvation = -68.409221 kcal Electronic energy + Delta-G solvation = -23196.300980 eV Core-core repulsion = 19782.064141 eV Total energy + Delta-G solvation = -3414.236839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.63475 -38.82728 -37.29226 -35.32387 -33.99322 -33.81036 -31.99455 -30.33920 -29.55316 -29.46361 -25.99644 -24.53608 -22.85273 -22.09709 -21.05911 -20.08247 -18.95327 -18.29983 -17.58068 -17.06849 -16.20988 -15.54952 -15.22036 -14.78129 -14.52699 -14.30207 -14.04009 -13.68756 -13.29583 -13.17671 -12.97864 -12.81995 -12.35665 -12.21851 -12.07967 -11.95675 -11.43548 -11.32313 -11.31304 -11.04064 -10.99136 -10.72336 -10.63457 -10.13762 -10.01344 -9.85813 -9.63148 -9.41011 -8.86945 -8.77548 -7.79774 -7.61578 -7.10336 -4.67004 2.14720 2.42988 2.85642 2.90561 2.96316 2.96914 3.32023 3.57602 3.68670 3.78283 4.48606 4.64039 4.94709 5.08033 5.50198 5.53890 5.59811 5.72885 5.75408 5.92949 5.93938 6.04905 6.21549 6.25036 6.33057 6.39112 6.49196 6.61545 6.70033 6.75958 6.76568 6.96136 7.05890 7.14557 7.36156 7.56005 7.70399 7.79036 7.99984 8.06317 8.10451 8.32824 8.56383 8.68065 8.96608 9.81634 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.003799 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.129601 B = 7367.994929 C = 7861.447833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.166 3.834 4 C -0.159 4.159 5 N -0.736 5.736 6 C 0.580 3.420 7 O -0.563 6.563 8 C -0.286 4.286 9 C -0.063 4.063 10 C -0.178 4.178 11 C 0.129 3.871 12 C -0.441 4.441 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.771 5.771 16 Si 0.912 3.088 17 H -0.267 1.267 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.239 4.239 21 C -0.020 4.020 22 C 0.526 3.474 23 N -0.854 5.854 24 O -0.534 6.534 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.395 0.605 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.403 0.597 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 1.137 7.995 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.077 3.923 4 C -0.218 4.218 5 N -0.393 5.393 6 C 0.375 3.625 7 O -0.445 6.445 8 C -0.291 4.291 9 C -0.082 4.082 10 C -0.197 4.197 11 C 0.126 3.874 12 C -0.469 4.469 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.394 5.394 16 Si 0.736 3.264 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.180 1.180 20 C -0.258 4.258 21 C -0.039 4.039 22 C 0.310 3.690 23 N -0.418 5.418 24 O -0.409 6.409 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.233 0.767 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.899 -0.083 8.529 9.378 hybrid contribution -0.781 1.576 -0.396 1.803 sum 3.118 1.494 8.133 8.838 Atomic orbital electron populations 1.21723 0.95511 1.01662 1.01715 1.21801 0.96642 0.93675 1.03935 1.20452 0.95325 0.93578 0.82981 1.22191 0.92098 1.02672 1.04794 1.46053 1.55297 1.32543 1.05368 1.18499 0.78842 0.83206 0.81929 1.90582 1.41002 1.27674 1.85214 1.18856 1.14162 1.04002 0.92056 1.20431 0.96176 0.94666 0.96961 1.20965 1.04551 1.02040 0.92139 1.17786 0.87957 0.88688 0.92986 1.19872 1.07093 1.22811 0.97105 0.89668 1.26102 0.95535 0.96673 0.96349 1.69738 1.10463 1.33032 1.26130 0.86214 0.79766 0.79830 0.80622 1.19194 1.19710 1.18046 1.20723 1.08720 0.99285 0.97084 1.20356 0.95251 0.96816 0.91474 1.20646 0.75539 0.82461 0.90374 1.43969 1.72996 1.07925 1.16948 1.90735 1.49401 1.64227 1.36536 0.93084 0.92376 0.92768 0.90755 0.88739 0.88562 0.92396 0.91671 0.76930 0.89599 0.86261 0.90185 0.88381 0.88030 0.76732 0.76728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.49 37.16 0.35 -1.89 16 2 C -0.12 -1.85 4.37 -26.73 -0.12 -1.97 16 3 C 0.17 2.35 0.68 -132.97 -0.09 2.26 16 4 C -0.16 -2.14 8.38 37.16 0.31 -1.82 16 5 N -0.74 -11.06 3.87 -49.68 -0.19 -11.25 16 6 C 0.58 11.03 6.97 -12.42 -0.09 10.94 16 7 O -0.56 -11.77 12.58 5.29 0.07 -11.70 16 8 C -0.29 -6.04 5.89 -104.73 -0.62 -6.66 16 9 C -0.06 -1.30 9.47 -39.61 -0.38 -1.67 16 10 C -0.18 -4.12 8.63 -39.27 -0.34 -4.46 16 11 C 0.13 3.15 5.57 -106.80 -0.60 2.55 16 12 C -0.44 -10.59 9.04 -37.75 -0.34 -10.93 16 13 H 0.09 1.95 7.91 -52.48 -0.42 1.54 16 14 C 0.07 1.68 5.13 -17.31 -0.09 1.60 16 15 N -0.77 -17.83 10.97 55.56 0.61 -17.22 16 16 Si 0.91 16.66 29.60 -169.99 -5.03 11.63 16 17 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 18 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 19 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 20 C -0.24 -5.52 9.73 -39.27 -0.38 -5.90 16 21 C -0.02 -0.44 9.52 -39.61 -0.38 -0.82 16 22 C 0.53 6.99 6.16 -10.99 -0.07 6.92 16 23 N -0.85 -8.04 8.57 31.22 0.27 -7.77 16 24 O -0.53 -8.66 16.12 5.55 0.09 -8.57 16 25 H 0.05 0.77 6.87 -51.93 -0.36 0.41 16 26 H 0.06 0.95 7.29 -51.93 -0.38 0.57 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 29 H 0.09 1.59 6.32 -51.93 -0.33 1.27 16 30 H 0.10 1.50 6.16 -51.93 -0.32 1.18 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.39 5.25 5.24 -40.82 -0.21 5.04 16 34 H 0.09 1.45 6.37 -52.49 -0.33 1.12 16 35 H 0.12 2.81 6.17 -52.49 -0.32 2.49 16 36 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 37 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 38 H 0.10 2.18 7.63 -52.49 -0.40 1.78 16 39 H 0.40 3.19 7.57 -40.82 -0.31 2.88 16 40 H 0.40 3.09 8.93 -40.82 -0.36 2.72 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -27.96 327.00 -7.04 -35.01 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -4.97 Total: 16.80 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.81 Total: -11.84 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.68 Total: -36.25 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.16 Total: -20.27 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.63 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.96 -7.04 -35.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888548859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.403 kcal (2) G-P(sol) polarization free energy of solvation -27.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds