Wall clock time and date at job start Tue Mar 31 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 C 1.53004 * 109.46825 * 185.00015 * 3 2 1 5 5 N 1.46498 * 109.46801 * 304.99599 * 3 2 1 6 6 C 1.34773 * 120.00506 * 300.00158 * 5 3 2 7 7 O 1.21588 * 119.99833 * 0.02562 * 6 5 3 8 8 C 1.47641 * 120.00572 * 180.02562 * 6 5 3 9 9 C 1.40016 * 119.89124 * 359.71830 * 8 6 5 10 10 C 1.36317 * 120.10684 * 179.76024 * 9 8 6 11 11 C 1.40889 * 119.88650 * 0.51976 * 10 9 8 12 12 C 1.41106 * 120.10074 * 179.71576 * 11 10 9 13 13 H 1.08003 * 120.00256 * 155.08699 * 12 11 10 14 14 C 1.40233 * 120.00004 * 335.08218 * 12 11 10 15 15 N 1.30645 * 120.00143 * 342.20969 * 14 12 11 16 16 Si 1.86800 * 119.99762 * 162.20797 * 14 12 11 17 17 H 1.48489 * 109.47497 * 94.66443 * 16 14 12 18 18 H 1.48506 * 109.46952 * 214.66702 * 16 14 12 19 19 H 1.48502 * 109.47172 * 334.66024 * 16 14 12 20 20 C 1.40890 * 119.79912 * 359.73908 * 11 10 9 21 21 C 1.36318 * 119.88832 * 0.02562 * 20 11 10 22 22 C 1.50697 * 109.47445 * 64.99700 * 3 2 1 23 23 N 1.34772 * 120.00362 * 204.99679 * 22 3 2 24 24 O 1.21285 * 119.99709 * 25.00160 * 22 3 2 25 25 H 1.09005 * 109.47250 * 300.00294 * 1 2 3 26 26 H 1.09002 * 109.47081 * 60.00092 * 1 2 3 27 27 H 1.09003 * 109.47363 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46883 * 119.99458 * 2 1 3 29 29 H 1.08994 * 109.46808 * 239.99556 * 2 1 3 30 30 H 1.08997 * 109.47248 * 59.99484 * 4 3 2 31 31 H 1.09000 * 109.46548 * 179.97438 * 4 3 2 32 32 H 1.09005 * 109.46769 * 299.99676 * 4 3 2 33 33 H 0.97001 * 119.99688 * 120.00363 * 5 3 2 34 34 H 1.07996 * 119.94406 * 0.03273 * 9 8 6 35 35 H 1.07994 * 120.05851 * 180.23573 * 10 9 8 36 36 H 0.96997 * 119.99922 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.05953 * 179.97438 * 20 11 10 38 38 H 1.08002 * 119.94938 * 179.97438 * 21 20 11 39 39 H 0.97004 * 119.99339 * 0.02562 * 23 22 3 40 40 H 0.96996 * 120.00650 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 -0.1257 5 7 1.4559 2.1669 -1.1315 6 6 1.6792 1.7426 -2.3910 7 8 2.3652 0.7582 -2.5883 8 6 1.0910 2.4729 -3.5314 9 6 0.2966 3.6027 -3.3014 10 6 -0.2446 4.2832 -4.3513 11 6 -0.0125 3.8415 -5.6689 12 6 -0.5755 4.5390 -6.7586 13 1 -0.1124 4.4833 -7.7328 14 6 -1.7364 5.3044 -6.5769 15 7 -2.4895 5.1097 -5.5273 16 14 -2.2058 6.6024 -7.8356 17 1 -3.1601 6.0213 -8.8136 18 1 -2.8428 7.7530 -7.1460 19 1 -0.9874 7.0649 -8.5476 20 6 0.7831 2.7009 -5.8950 21 6 1.3240 2.0298 -4.8389 22 6 1.6413 2.1163 1.2876 23 7 1.5145 3.4572 1.3354 24 8 1.4346 1.4519 2.2810 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 3.8532 0.9569 -1.0570 31 1 3.9281 2.4720 -0.1262 32 1 3.9994 0.9052 0.7162 33 1 0.9084 2.9520 -0.9741 34 1 0.1160 3.9381 -2.2909 35 1 -0.8541 5.1568 -4.1732 36 1 -3.2923 5.6394 -5.4015 37 1 0.9634 2.3584 -6.9032 38 1 1.9337 1.1551 -5.0111 39 1 1.6796 3.9885 0.5408 40 1 1.2576 3.8910 2.1640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888548859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:43 Heat of formation + Delta-G solvation = -86.620727 kcal Electronic energy + Delta-G solvation = -23197.090690 eV Core-core repulsion = 19782.064141 eV Total energy + Delta-G solvation = -3415.026550 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87080 -40.24160 -38.92200 -36.67913 -35.65164 -34.82868 -33.40339 -31.80061 -31.26528 -30.84521 -27.66572 -25.73178 -24.08852 -23.63044 -22.78261 -21.46782 -20.25757 -19.57028 -19.30697 -18.04901 -17.61264 -17.18033 -16.38080 -16.18321 -15.81404 -15.73964 -15.55911 -15.02783 -14.92325 -14.46904 -14.40578 -14.18743 -13.88648 -13.71667 -13.42101 -13.27109 -13.09081 -12.82537 -12.66015 -12.51309 -12.33535 -12.16457 -11.92487 -11.73134 -11.34574 -11.23407 -11.08669 -10.78608 -10.38003 -10.13303 -9.53975 -9.37947 -8.77914 -6.46061 0.47628 1.18695 1.34316 1.40000 1.43437 1.55532 2.14563 2.19852 2.26219 2.35011 2.81193 3.57250 3.71925 3.89680 3.93675 4.21020 4.32164 4.36237 4.48835 4.56923 4.59827 4.68078 4.85460 4.95315 5.02184 5.05264 5.12250 5.18549 5.23427 5.28391 5.33251 5.47907 5.61681 5.79911 5.84498 5.96995 6.02245 6.22888 6.26454 6.56779 6.65934 6.80112 6.91833 7.14747 7.46304 8.17214 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.003799 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.129601 B = 7367.994929 C = 7861.447833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C 0.164 3.836 4 C -0.156 4.156 5 N -0.717 5.717 6 C 0.584 3.416 7 O -0.582 6.582 8 C -0.289 4.289 9 C -0.053 4.053 10 C -0.197 4.197 11 C 0.102 3.898 12 C -0.476 4.476 13 H 0.083 0.917 14 C 0.041 3.959 15 N -0.799 5.799 16 Si 0.983 3.017 17 H -0.264 1.264 18 H -0.262 1.262 19 H -0.258 1.258 20 C -0.254 4.254 21 C -0.031 4.031 22 C 0.531 3.469 23 N -0.832 5.832 24 O -0.563 6.563 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.405 0.595 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.296 0.704 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.414 0.586 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 2.392 9.270 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C 0.075 3.925 4 C -0.214 4.214 5 N -0.373 5.373 6 C 0.378 3.622 7 O -0.464 6.464 8 C -0.294 4.294 9 C -0.072 4.072 10 C -0.217 4.217 11 C 0.099 3.901 12 C -0.504 4.504 13 H 0.101 0.899 14 C -0.178 4.178 15 N -0.422 5.422 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.186 1.186 19 H -0.181 1.181 20 C -0.273 4.273 21 C -0.050 4.050 22 C 0.314 3.686 23 N -0.397 5.397 24 O -0.441 6.441 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.243 0.757 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.245 0.755 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.748 1.211 9.830 10.590 hybrid contribution -0.681 1.101 -0.697 1.470 sum 3.066 2.312 9.134 9.908 Atomic orbital electron populations 1.21668 0.95395 1.02100 1.00924 1.21759 0.96690 0.94346 1.03261 1.20520 0.95859 0.93122 0.83010 1.22143 0.91418 1.03684 1.04170 1.45793 1.54601 1.32481 1.04426 1.18185 0.78581 0.82766 0.82644 1.90592 1.41715 1.28386 1.85729 1.19155 1.13646 1.04073 0.92492 1.20718 0.94559 0.93640 0.98273 1.21002 1.05609 1.02557 0.92484 1.18127 0.88686 0.89310 0.93991 1.20110 1.08421 1.24680 0.97165 0.89888 1.26855 0.94776 0.97936 0.98245 1.69754 1.11020 1.33867 1.27578 0.85159 0.79256 0.77186 0.78050 1.18824 1.18567 1.18112 1.20849 1.09308 0.99545 0.97648 1.20508 0.95412 0.96959 0.92109 1.20328 0.75551 0.83425 0.89277 1.43773 1.71255 1.06620 1.18065 1.90738 1.51058 1.65138 1.37151 0.92879 0.93863 0.91938 0.90122 0.90637 0.90763 0.90760 0.90365 0.75698 0.85725 0.86943 0.89244 0.88128 0.87749 0.75515 0.75212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.49 71.98 0.68 -3.46 16 2 C -0.12 -3.56 4.37 30.59 0.13 -3.42 16 3 C 0.16 4.31 0.68 2.86 0.00 4.31 16 4 C -0.16 -3.87 8.38 71.98 0.60 -3.26 16 5 N -0.72 -19.98 3.87 -429.36 -1.66 -21.65 16 6 C 0.58 21.51 6.97 86.73 0.60 22.11 16 7 O -0.58 -23.99 12.58 -3.99 -0.05 -24.04 16 8 C -0.29 -11.99 5.89 -19.93 -0.12 -12.11 16 9 C -0.05 -2.11 9.47 22.25 0.21 -1.90 16 10 C -0.20 -9.16 8.63 22.47 0.19 -8.97 16 11 C 0.10 5.08 5.57 -21.28 -0.12 4.96 16 12 C -0.48 -23.38 9.04 23.46 0.21 -23.17 16 13 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 14 C 0.04 1.84 5.13 85.35 0.44 2.28 16 15 N -0.80 -36.98 10.97 21.87 0.24 -36.74 16 16 Si 0.98 33.79 29.60 68.60 2.03 35.82 16 17 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 18 H -0.26 -8.45 7.11 99.48 0.71 -7.74 16 19 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 20 C -0.25 -12.06 9.73 22.47 0.22 -11.84 16 21 C -0.03 -1.38 9.52 22.25 0.21 -1.17 16 22 C 0.53 12.66 6.16 87.66 0.54 13.20 16 23 N -0.83 -12.82 8.57 -173.54 -1.49 -14.31 16 24 O -0.56 -16.96 16.12 -3.04 -0.05 -17.01 16 25 H 0.05 1.50 6.87 -2.38 -0.02 1.48 16 26 H 0.04 1.35 7.29 -2.39 -0.02 1.34 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 2.25 7.68 -2.38 -0.02 2.23 16 29 H 0.08 2.51 6.32 -2.39 -0.02 2.50 16 30 H 0.07 2.22 6.16 -2.39 -0.01 2.21 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.41 9.52 5.24 -92.71 -0.49 9.03 16 34 H 0.13 3.86 6.37 -2.91 -0.02 3.84 16 35 H 0.11 5.32 6.17 -2.91 -0.02 5.30 16 36 H 0.30 12.18 8.29 -92.71 -0.77 11.42 16 37 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 38 H 0.10 4.54 7.63 -2.91 -0.02 4.52 16 39 H 0.41 4.95 7.57 -92.71 -0.70 4.25 16 40 H 0.41 4.91 8.93 -92.71 -0.83 4.08 16 Total: -1.00 -60.69 327.00 1.93 -58.76 By element: Atomic # 1 Polarization: 42.50 SS G_CDS: -0.91 Total: 41.59 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 3.82 Total: -22.43 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -2.91 Total: -72.69 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.10 Total: -41.05 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 2.03 Total: 35.82 kcal Total: -60.69 1.93 -58.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888548859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.862 kcal (2) G-P(sol) polarization free energy of solvation -60.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds