Wall clock time and date at job start Tue Mar 31 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47275 * 2 1 4 4 N 1.46898 * 109.47107 * 120.00612 * 2 1 3 5 5 C 1.46903 * 111.00254 * 168.59235 * 4 2 1 6 6 C 1.50692 * 109.46934 * 293.95373 * 5 4 2 7 7 H 1.07997 * 120.00571 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99804 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99953 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99842 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47153 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47075 * 120.00425 * 10 8 6 13 13 H 1.48506 * 109.47112 * 240.00358 * 10 8 6 14 14 C 1.46906 * 110.99848 * 292.54564 * 4 2 1 15 15 C 1.50699 * 109.47040 * 159.59977 * 14 4 2 16 16 C 1.38042 * 120.05307 * 263.07443 * 15 14 4 17 17 C 1.38621 * 120.45841 * 179.73143 * 16 15 14 18 18 C 1.37794 * 120.39320 * 0.57088 * 17 16 15 19 19 C 1.39500 * 119.73478 * 359.70836 * 18 17 16 20 20 N 1.36159 * 133.71458 * 180.02562 * 19 18 17 21 21 C 1.30619 * 108.72060 * 179.97438 * 20 19 18 22 22 O 1.35187 * 124.92779 * 180.02562 * 21 20 19 23 23 O 1.34388 * 110.14236 * 0.02562 * 21 20 19 24 24 C 1.35267 * 108.19399 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.47143 * 299.77736 * 1 2 3 26 26 H 1.09000 * 109.47180 * 59.77618 * 1 2 3 27 27 H 1.09003 * 109.47291 * 179.77283 * 1 2 3 28 28 H 1.09003 * 109.47167 * 239.99951 * 2 1 3 29 29 H 1.09006 * 109.46970 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47692 * 300.00029 * 3 2 1 31 31 H 1.09003 * 109.46889 * 60.00654 * 3 2 1 32 32 H 1.09002 * 109.46934 * 53.95314 * 5 4 2 33 33 H 1.08998 * 109.46990 * 173.94915 * 5 4 2 34 34 H 0.96998 * 119.99702 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46807 * 279.60188 * 14 4 2 36 36 H 1.09004 * 109.46829 * 39.60181 * 14 4 2 37 37 H 1.07999 * 119.77203 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.79886 * 180.30200 * 17 16 15 39 39 H 1.08005 * 120.13497 * 179.68586 * 18 17 16 40 40 H 0.96696 * 114.00192 * 359.96464 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 3.4626 -0.9517 1.1055 6 6 3.7254 -1.9329 -0.0075 7 1 2.9028 -2.3253 -0.5870 8 6 5.0161 -2.3299 -0.2862 9 7 6.0178 -1.8525 0.4198 10 14 5.3418 -3.5468 -1.6654 11 1 4.0558 -3.9300 -2.3015 12 1 6.2277 -2.9204 -2.6793 13 1 6.0010 -4.7572 -1.1123 14 6 1.6993 0.0684 2.4144 15 6 1.7455 -0.8494 3.6088 16 6 0.5815 -1.4095 4.0956 17 6 0.6149 -2.2593 5.1903 18 6 1.8097 -2.5464 5.8137 19 6 2.9927 -1.9825 5.3355 20 7 4.2967 -2.0659 5.7182 21 6 5.0169 -1.3278 4.9166 22 8 6.3574 -1.1747 5.0007 23 8 4.2318 -0.7426 3.9961 24 6 2.9552 -1.1274 4.2236 25 1 -0.3633 0.5104 0.8919 26 1 -0.3633 0.5173 -0.8880 27 1 -0.3634 -1.0277 -0.0041 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 3.9865 -0.0185 0.8985 33 1 3.8191 -1.3671 2.0480 34 1 6.9257 -2.1321 0.2240 35 1 2.4269 0.8697 2.5435 36 1 0.7007 0.4956 2.3228 37 1 -0.3612 -1.1879 3.6174 38 1 -0.3016 -2.6955 5.5593 39 1 1.8302 -3.2050 6.6695 40 1 6.7650 -1.6687 5.7251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891694866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:21 Heat of formation + Delta-G solvation = 10.194020 kcal Electronic energy + Delta-G solvation = -23991.341750 eV Core-core repulsion = 20580.513403 eV Total energy + Delta-G solvation = -3410.828347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.88190 -38.62718 -37.73034 -37.09494 -34.26137 -32.75761 -31.85092 -29.96182 -28.95886 -27.16544 -26.59713 -24.64498 -23.24531 -22.70964 -22.03337 -20.78551 -18.70413 -18.68099 -17.92058 -16.85143 -16.67490 -16.10415 -15.41922 -14.80419 -14.71450 -14.38229 -14.12030 -13.47889 -13.33797 -13.16929 -12.89801 -12.73101 -12.32542 -12.14204 -11.97133 -11.93257 -11.46097 -11.29825 -11.08476 -11.00580 -10.65426 -10.62725 -10.61050 -10.47007 -10.18320 -9.98053 -9.66912 -9.09732 -8.40205 -8.33462 -7.86764 -7.20912 -5.97472 -3.98454 1.10421 1.55709 2.01554 2.77161 3.31865 3.39300 3.43932 3.85045 3.95374 4.45842 4.70962 4.92445 5.08725 5.21942 5.36838 5.40465 5.46093 5.53307 5.61540 5.77245 5.83780 5.88778 5.98360 6.03277 6.08863 6.24812 6.27162 6.32327 6.41648 6.53071 6.60823 6.74780 6.77893 6.85804 6.89235 7.21533 7.39821 7.46448 7.83557 7.96581 8.15644 8.24441 8.57935 9.08803 9.64388 11.12510 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.007512 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.449523 B = 3726.453629 C = 5150.447527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 C -0.181 4.181 4 N -0.524 5.524 5 C 0.188 3.812 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.892 5.892 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.084 3.916 15 C -0.018 4.018 16 C -0.098 4.098 17 C -0.112 4.112 18 C -0.085 4.085 19 C 0.049 3.951 20 N -0.540 5.540 21 C 0.457 3.543 22 O -0.410 6.410 23 O -0.180 6.180 24 C 0.020 3.980 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.045 0.955 32 H -0.006 1.006 33 H 0.039 0.961 34 H 0.259 0.741 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 3.172 9.296 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.240 4.240 4 N -0.247 5.247 5 C 0.063 3.937 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.532 5.532 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.044 4.044 15 C -0.020 4.020 16 C -0.117 4.117 17 C -0.131 4.131 18 C -0.105 4.105 19 C -0.062 4.062 20 N -0.292 5.292 21 C 0.208 3.792 22 O -0.210 6.210 23 O -0.073 6.073 24 C -0.030 4.030 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.011 0.989 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -8.199 2.807 9.268 12.689 hybrid contribution 1.122 0.125 -0.962 1.483 sum -7.077 2.932 8.306 11.299 Atomic orbital electron populations 1.21877 0.96066 1.01682 1.00222 1.21617 0.93746 0.91991 0.95494 1.22453 1.02478 0.98526 1.00561 1.62406 1.20256 1.43214 0.98873 1.19899 0.80132 0.95527 0.98102 1.21185 0.92242 1.25128 1.15894 0.91939 1.24978 0.96239 0.96660 0.96700 1.69992 0.99082 1.44097 1.40011 0.86524 0.78236 0.81108 0.82062 1.19670 1.21153 1.21134 1.21050 1.00887 0.93107 0.89321 1.18764 0.87801 0.99424 0.96009 1.20747 0.96805 0.97505 0.96668 1.20915 0.97261 0.98656 0.96267 1.20080 0.88916 1.00616 1.00873 1.19446 0.91518 0.99657 0.95602 1.71129 1.02765 1.26017 1.29268 1.22290 0.85631 0.87601 0.83634 1.84745 1.10168 1.69827 1.56242 1.84620 1.16183 1.59838 1.46633 1.19809 0.82833 1.01376 0.98951 0.93488 0.93277 0.92220 0.88767 0.91981 0.93206 0.93575 0.98856 0.94354 0.93155 0.94417 0.90305 0.84654 0.85022 0.85261 0.70849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.19 37.16 0.34 -1.75 16 2 C 0.08 1.51 2.77 -67.72 -0.19 1.32 16 3 C -0.18 -3.16 8.52 37.15 0.32 -2.84 16 4 N -0.52 -11.18 4.35 -229.52 -1.00 -12.18 16 5 C 0.19 4.95 4.38 -4.98 -0.02 4.93 16 6 C -0.51 -14.41 8.35 -34.44 -0.29 -14.69 16 7 H 0.06 1.77 7.20 -52.49 -0.38 1.39 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 10 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.08 1.54 3.72 -4.97 -0.02 1.52 16 15 C -0.02 -0.33 5.29 -104.59 -0.55 -0.89 16 16 C -0.10 -1.42 9.66 -39.51 -0.38 -1.80 16 17 C -0.11 -1.45 10.02 -39.60 -0.40 -1.85 16 18 C -0.09 -1.27 10.10 -39.27 -0.40 -1.67 16 19 C 0.05 0.91 7.23 -84.69 -0.61 0.29 16 20 N -0.54 -9.92 11.38 -12.79 -0.15 -10.07 16 21 C 0.46 8.71 9.54 52.25 0.50 9.21 16 22 O -0.41 -6.35 13.62 -40.54 -0.55 -6.90 16 23 O -0.18 -3.96 8.93 -20.54 -0.18 -4.14 16 24 C 0.02 0.40 5.97 -38.70 -0.23 0.17 16 25 H 0.05 0.63 6.30 -51.93 -0.33 0.30 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.09 2.01 6.63 -51.93 -0.34 1.66 16 29 H 0.06 1.25 6.63 -51.93 -0.34 0.91 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.73 6.72 -51.93 -0.35 0.38 16 32 H -0.01 -0.18 6.47 -51.93 -0.34 -0.52 16 33 H 0.04 1.10 4.47 -51.93 -0.23 0.86 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.04 0.74 7.34 -51.93 -0.38 0.35 16 36 H 0.08 1.20 5.76 -51.93 -0.30 0.90 16 37 H 0.14 1.59 8.05 -52.49 -0.42 1.17 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.43 3.84 9.06 45.56 0.41 4.25 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -34.20 326.11 -7.53 -41.72 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.25 Total: 2.36 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.03 Total: -6.54 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.41 Total: -48.49 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.74 Total: -11.05 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.20 -7.53 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891694866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.918 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds