Wall clock time and date at job start Tue Mar 31 2020 06:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47275 * 2 1 4 4 N 1.46898 * 109.47107 * 120.00612 * 2 1 3 5 5 C 1.46903 * 111.00254 * 168.59235 * 4 2 1 6 6 C 1.50692 * 109.46934 * 293.95373 * 5 4 2 7 7 H 1.07997 * 120.00571 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99804 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99953 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99842 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47153 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47075 * 120.00425 * 10 8 6 13 13 H 1.48506 * 109.47112 * 240.00358 * 10 8 6 14 14 C 1.46906 * 110.99848 * 292.54564 * 4 2 1 15 15 C 1.50699 * 109.47040 * 159.59977 * 14 4 2 16 16 C 1.38042 * 120.05307 * 263.07443 * 15 14 4 17 17 C 1.38621 * 120.45841 * 179.73143 * 16 15 14 18 18 C 1.37794 * 120.39320 * 0.57088 * 17 16 15 19 19 C 1.39500 * 119.73478 * 359.70836 * 18 17 16 20 20 N 1.36159 * 133.71458 * 180.02562 * 19 18 17 21 21 C 1.30619 * 108.72060 * 179.97438 * 20 19 18 22 22 O 1.35187 * 124.92779 * 180.02562 * 21 20 19 23 23 O 1.34388 * 110.14236 * 0.02562 * 21 20 19 24 24 C 1.35267 * 108.19399 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.47143 * 299.77736 * 1 2 3 26 26 H 1.09000 * 109.47180 * 59.77618 * 1 2 3 27 27 H 1.09003 * 109.47291 * 179.77283 * 1 2 3 28 28 H 1.09003 * 109.47167 * 239.99951 * 2 1 3 29 29 H 1.09006 * 109.46970 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47692 * 300.00029 * 3 2 1 31 31 H 1.09003 * 109.46889 * 60.00654 * 3 2 1 32 32 H 1.09002 * 109.46934 * 53.95314 * 5 4 2 33 33 H 1.08998 * 109.46990 * 173.94915 * 5 4 2 34 34 H 0.96998 * 119.99702 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46807 * 279.60188 * 14 4 2 36 36 H 1.09004 * 109.46829 * 39.60181 * 14 4 2 37 37 H 1.07999 * 119.77203 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.79886 * 180.30200 * 17 16 15 39 39 H 1.08005 * 120.13497 * 179.68586 * 18 17 16 40 40 H 0.96696 * 114.00192 * 359.96464 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 3.4626 -0.9517 1.1055 6 6 3.7254 -1.9329 -0.0075 7 1 2.9028 -2.3253 -0.5870 8 6 5.0161 -2.3299 -0.2862 9 7 6.0178 -1.8525 0.4198 10 14 5.3418 -3.5468 -1.6654 11 1 4.0558 -3.9300 -2.3015 12 1 6.2277 -2.9204 -2.6793 13 1 6.0010 -4.7572 -1.1123 14 6 1.6993 0.0684 2.4144 15 6 1.7455 -0.8494 3.6088 16 6 0.5815 -1.4095 4.0956 17 6 0.6149 -2.2593 5.1903 18 6 1.8097 -2.5464 5.8137 19 6 2.9927 -1.9825 5.3355 20 7 4.2967 -2.0659 5.7182 21 6 5.0169 -1.3278 4.9166 22 8 6.3574 -1.1747 5.0007 23 8 4.2318 -0.7426 3.9961 24 6 2.9552 -1.1274 4.2236 25 1 -0.3633 0.5104 0.8919 26 1 -0.3633 0.5173 -0.8880 27 1 -0.3634 -1.0277 -0.0041 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 3.9865 -0.0185 0.8985 33 1 3.8191 -1.3671 2.0480 34 1 6.9257 -2.1321 0.2240 35 1 2.4269 0.8697 2.5435 36 1 0.7007 0.4956 2.3228 37 1 -0.3612 -1.1879 3.6174 38 1 -0.3016 -2.6955 5.5593 39 1 1.8302 -3.2050 6.6695 40 1 6.7650 -1.6687 5.7251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891694866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:20 Heat of formation + Delta-G solvation = -18.393577 kcal Electronic energy + Delta-G solvation = -23992.581401 eV Core-core repulsion = 20580.513403 eV Total energy + Delta-G solvation = -3412.067998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.26246 -40.01010 -39.12933 -38.43818 -35.62948 -34.90205 -33.20078 -31.58666 -30.23497 -28.93573 -27.96618 -26.30655 -24.60402 -24.20464 -23.75421 -22.13816 -20.26345 -20.01054 -19.22653 -18.43699 -18.20670 -17.91668 -17.01559 -16.46179 -16.04322 -15.79595 -15.70921 -14.95966 -14.77458 -14.50586 -14.46852 -14.10264 -14.04965 -13.52495 -13.43543 -13.21939 -13.00398 -12.84140 -12.69256 -12.51873 -12.44466 -12.34041 -12.02965 -11.91228 -11.80869 -11.60777 -11.27223 -11.12265 -10.60925 -9.61959 -9.15314 -8.94592 -8.19115 -6.28833 -0.17832 0.30766 0.75643 1.34536 1.35214 1.40458 1.48701 2.36896 2.55970 2.70060 3.12258 3.40523 3.51757 3.80373 4.01887 4.09523 4.16596 4.31567 4.36601 4.42663 4.52203 4.61063 4.64391 4.73268 4.82773 4.85301 5.02560 5.08227 5.09598 5.21528 5.29664 5.31928 5.44287 5.48502 5.52888 5.57846 5.68154 5.71038 6.06992 6.09732 6.41879 6.65676 6.67769 6.88814 7.39282 8.90850 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.007512 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.449523 B = 3726.453629 C = 5150.447527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.072 3.928 3 C -0.172 4.172 4 N -0.527 5.527 5 C 0.208 3.792 6 C -0.520 4.520 7 H 0.061 0.939 8 C -0.001 4.001 9 N -0.929 5.929 10 Si 0.963 3.037 11 H -0.261 1.261 12 H -0.278 1.278 13 H -0.282 1.282 14 C 0.091 3.909 15 C -0.052 4.052 16 C -0.082 4.082 17 C -0.095 4.095 18 C -0.084 4.084 19 C 0.019 3.981 20 N -0.535 5.535 21 C 0.438 3.562 22 O -0.414 6.414 23 O -0.220 6.220 24 C -0.016 4.016 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.075 0.925 31 H 0.063 0.937 32 H -0.046 1.046 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.012 0.988 36 H 0.118 0.882 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.157 0.843 40 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.041 2.170 9.518 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.036 4.036 3 C -0.231 4.231 4 N -0.250 5.250 5 C 0.082 3.918 6 C -0.558 4.558 7 H 0.079 0.921 8 C -0.199 4.199 9 N -0.570 5.570 10 Si 0.788 3.212 11 H -0.185 1.185 12 H -0.204 1.204 13 H -0.208 1.208 14 C -0.037 4.037 15 C -0.054 4.054 16 C -0.101 4.101 17 C -0.113 4.113 18 C -0.103 4.103 19 C -0.091 4.091 20 N -0.287 5.287 21 C 0.189 3.811 22 O -0.218 6.218 23 O -0.114 6.114 24 C -0.065 4.065 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.094 0.906 31 H 0.082 0.918 32 H -0.029 1.029 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.135 0.865 37 H 0.191 0.809 38 H 0.201 0.799 39 H 0.175 0.825 40 H 0.318 0.682 Dipole moment (debyes) X Y Z Total from point charges -11.773 1.802 9.507 15.240 hybrid contribution 2.154 0.450 -0.958 2.400 sum -9.619 2.253 8.550 13.065 Atomic orbital electron populations 1.21771 0.91945 1.02338 1.02482 1.21730 0.96844 0.91811 0.93201 1.22354 0.99679 0.98411 1.02673 1.62338 1.16557 1.44976 1.01143 1.19439 0.83168 0.93005 0.96185 1.21517 0.92432 1.25401 1.16447 0.92077 1.25906 0.96028 0.98617 0.99305 1.70149 0.99467 1.45577 1.41799 0.85426 0.78465 0.78459 0.78858 1.18455 1.20386 1.20758 1.21081 1.01905 0.92436 0.88230 1.19085 0.88511 1.01172 0.96628 1.21284 0.96658 0.95774 0.96359 1.21504 0.98304 0.96853 0.94654 1.20616 0.88200 1.00064 1.01466 1.20008 0.92463 1.00639 0.96026 1.71092 1.03120 1.25599 1.28931 1.22624 0.86479 0.88204 0.83757 1.84714 1.08947 1.70470 1.57676 1.84526 1.17736 1.61028 1.48158 1.20365 0.82704 1.02900 1.00500 0.91276 0.90925 0.92355 0.92082 0.96232 0.90558 0.91849 1.02882 0.96707 0.93125 0.96978 0.86457 0.80946 0.79881 0.82549 0.68169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.19 71.98 0.66 -2.73 16 2 C 0.07 2.72 2.77 44.91 0.12 2.84 16 3 C -0.17 -6.05 8.52 71.98 0.61 -5.43 16 4 N -0.53 -22.86 4.35 -880.07 -3.83 -26.69 16 5 C 0.21 11.63 4.38 85.55 0.38 12.01 16 6 C -0.52 -30.77 8.35 25.60 0.21 -30.56 16 7 H 0.06 3.54 7.20 -2.91 -0.02 3.52 16 8 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 9 N -0.93 -58.85 13.29 21.45 0.28 -58.57 16 10 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 11 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 C 0.09 3.31 3.72 85.56 0.32 3.63 16 15 C -0.05 -1.87 5.29 -19.84 -0.10 -1.97 16 16 C -0.08 -2.08 9.66 22.31 0.22 -1.86 16 17 C -0.09 -2.02 10.02 22.26 0.22 -1.80 16 18 C -0.08 -2.29 10.10 22.47 0.23 -2.06 16 19 C 0.02 0.72 7.23 39.28 0.28 1.01 16 20 N -0.53 -20.35 11.38 -422.73 -4.81 -25.16 16 21 C 0.44 17.90 9.54 130.42 1.24 19.15 16 22 O -0.41 -13.85 13.62 -62.40 -0.85 -14.70 16 23 O -0.22 -10.51 8.93 9.17 0.08 -10.43 16 24 C -0.02 -0.67 5.97 22.84 0.14 -0.53 16 25 H 0.07 1.52 6.30 -2.39 -0.02 1.51 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 2.67 6.63 -2.39 -0.02 2.65 16 29 H 0.02 0.82 6.63 -2.38 -0.02 0.80 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 1.97 6.72 -2.39 -0.02 1.95 16 32 H -0.05 -2.89 6.47 -2.39 -0.02 -2.91 16 33 H 0.02 0.92 4.47 -2.39 -0.01 0.90 16 34 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.01 0.49 7.34 -2.39 -0.02 0.48 16 36 H 0.12 3.24 5.76 -2.39 -0.01 3.22 16 37 H 0.17 3.03 8.05 -2.91 -0.02 3.00 16 38 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.46 8.79 9.06 -74.06 -0.67 8.12 16 Total: -1.00 -80.78 326.11 -1.69 -82.47 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.41 Total: 12.63 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 4.99 Total: -7.91 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -8.35 Total: -110.42 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.77 Total: -25.13 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -80.78 -1.69 -82.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891694866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.077 kcal (2) G-P(sol) polarization free energy of solvation -80.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds