Wall clock time and date at job start Tue Mar 31 2020 06:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47184 * 2 1 4 4 H 1.09007 * 109.99072 * 53.91650 * 3 2 1 5 5 C 1.54100 * 109.87863 * 174.99837 * 3 2 1 6 6 C 1.54805 * 104.18751 * 121.45727 * 5 3 2 7 7 C 1.55001 * 102.09460 * 20.87922 * 6 5 3 8 8 H 1.08995 * 110.61718 * 81.47603 * 7 6 5 9 9 C 1.50697 * 110.61932 * 204.32282 * 7 6 5 10 10 O 1.21275 * 120.00160 * 22.45911 * 9 7 6 11 11 N 1.34775 * 119.99633 * 202.47084 * 9 7 6 12 12 C 1.37217 * 119.99858 * 182.54424 * 11 9 7 13 13 H 1.08005 * 119.99878 * 117.22245 * 12 11 9 14 14 C 1.38891 * 120.00074 * 297.22853 * 12 11 9 15 15 N 1.31409 * 119.99744 * 3.41105 * 14 12 11 16 16 Si 1.86796 * 119.99913 * 183.40674 * 14 12 11 17 17 H 1.48493 * 109.47306 * 60.00110 * 16 14 12 18 18 H 1.48502 * 109.47160 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47497 * 299.99874 * 16 14 12 20 20 C 1.39422 * 120.00310 * 2.54299 * 11 9 7 21 21 C 1.39059 * 119.70159 * 63.47881 * 20 11 9 22 22 C 1.38376 * 119.10494 * 179.97438 * 21 20 11 23 23 C 1.38831 * 118.48901 * 0.02562 * 22 21 20 24 24 C 1.38147 * 119.31221 * 359.97438 * 23 22 21 25 25 N 1.31879 * 120.84997 * 359.74835 * 24 23 22 26 26 O 1.43741 * 109.87936 * 292.83153 * 3 2 1 27 27 H 1.08997 * 109.47020 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46972 * 300.00244 * 1 2 3 29 29 H 1.08999 * 109.46612 * 60.00103 * 1 2 3 30 30 H 1.09001 * 109.46972 * 239.99756 * 2 1 3 31 31 H 1.08999 * 109.46612 * 119.99897 * 2 1 3 32 32 H 1.09005 * 110.48693 * 240.13300 * 5 3 2 33 33 H 1.09004 * 110.48597 * 2.77655 * 5 3 2 34 34 H 1.08997 * 110.90976 * 139.07985 * 6 5 3 35 35 H 1.09000 * 110.90686 * 262.64754 * 6 5 3 36 36 H 0.97011 * 119.99886 * 184.99451 * 15 14 12 37 37 H 1.08000 * 120.44526 * 0.02562 * 21 20 11 38 38 H 1.08003 * 120.75703 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.34122 * 180.02562 * 23 22 21 40 40 H 1.08002 * 119.57180 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5955 1.9949 0.8279 5 6 3.5758 1.4552 0.1263 6 6 4.0546 2.2041 -1.1411 7 6 2.7842 2.9910 -1.5528 8 1 2.6916 3.9046 -0.9656 9 6 2.8108 3.3089 -3.0256 10 8 3.4893 2.6420 -3.7777 11 7 2.0809 4.3345 -3.5068 12 6 2.0640 4.5917 -4.8546 13 1 1.1391 4.5158 -5.4072 14 6 3.2362 4.9493 -5.5081 15 7 4.3733 4.9763 -4.8500 16 14 3.1963 5.3918 -7.3224 17 1 2.3008 6.5584 -7.5279 18 1 4.5675 5.7333 -7.7789 19 1 2.6891 4.2349 -8.1031 20 6 1.3428 5.1343 -2.6353 21 6 1.9999 5.8926 -1.6725 22 6 1.2553 6.6824 -0.8143 23 6 -0.1265 6.6861 -0.9488 24 6 -0.7128 5.9077 -1.9280 25 7 0.0231 5.1689 -2.7354 26 8 1.7085 2.0781 -1.2458 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8803 1.9924 1.0247 33 1 3.9661 0.4375 0.1386 34 1 4.8737 2.8835 -0.9055 35 1 4.3470 1.5010 -1.9211 36 1 5.1788 5.2953 -5.2864 37 1 3.0769 5.8662 -1.5962 38 1 1.7380 7.2824 -0.0570 39 1 -0.7367 7.2918 -0.2951 40 1 -1.7874 5.9071 -2.0361 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892470604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:54 Heat of formation + Delta-G solvation = -54.314297 kcal Electronic energy + Delta-G solvation = -24126.940823 eV Core-core repulsion = 20713.315185 eV Total energy + Delta-G solvation = -3413.625638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74006 -40.58945 -39.31317 -36.34747 -34.63373 -33.98431 -33.29355 -33.01645 -30.75907 -29.72028 -27.17880 -25.26053 -24.23221 -23.96008 -22.84905 -21.85145 -21.16825 -19.47164 -18.62048 -17.56116 -17.32343 -17.13511 -16.97380 -16.53949 -16.13256 -15.86804 -15.13796 -14.91560 -14.59042 -14.49683 -14.36117 -14.27918 -13.91642 -13.87831 -13.46309 -13.14252 -12.82029 -12.77909 -12.68579 -12.62420 -12.45644 -12.18003 -11.91427 -11.72714 -11.48134 -11.01267 -10.85073 -10.68218 -10.59963 -10.34282 -9.86600 -9.07955 -8.32929 -6.36704 0.25753 0.50456 1.32689 1.39226 1.45313 1.80769 2.20658 2.71481 2.87517 3.03897 3.18150 3.51714 3.65828 3.84503 3.90837 4.01602 4.10804 4.15747 4.17067 4.30289 4.34890 4.35769 4.38360 4.59535 4.71157 4.74885 4.85607 4.90847 4.90992 5.03406 5.08313 5.18562 5.25154 5.26896 5.33042 5.40989 5.41496 5.83833 5.93047 6.24710 6.83614 6.87512 7.11017 7.54263 8.00837 8.75163 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.006927 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.690356 B = 4041.342625 C = 5142.666697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.063 3.937 4 H 0.084 0.916 5 C -0.136 4.136 6 C -0.135 4.135 7 C 0.063 3.937 8 H 0.090 0.910 9 C 0.503 3.497 10 O -0.557 6.557 11 N -0.420 5.420 12 C -0.365 4.365 13 H 0.062 0.938 14 C 0.021 3.979 15 N -0.877 5.877 16 Si 0.985 3.015 17 H -0.259 1.259 18 H -0.272 1.272 19 H -0.275 1.275 20 C 0.347 3.653 21 C -0.199 4.199 22 C -0.055 4.055 23 C -0.180 4.180 24 C 0.102 3.898 25 N -0.535 5.535 26 O -0.382 6.382 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.268 0.732 37 H 0.120 0.880 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 0.407 16.471 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.006 3.994 4 H 0.102 0.898 5 C -0.173 4.173 6 C -0.173 4.173 7 C 0.002 3.998 8 H 0.107 0.893 9 C 0.291 3.709 10 O -0.434 6.434 11 N -0.141 5.141 12 C -0.492 4.492 13 H 0.080 0.920 14 C -0.185 4.185 15 N -0.511 5.511 16 Si 0.807 3.193 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.200 1.200 20 C 0.122 3.878 21 C -0.222 4.222 22 C -0.081 4.081 23 C -0.200 4.200 24 C -0.056 4.056 25 N -0.248 5.248 26 O -0.302 6.302 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.138 0.862 38 H 0.192 0.808 39 H 0.198 0.802 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.218 -0.552 15.247 16.124 hybrid contribution 0.797 0.677 -0.876 1.364 sum -4.421 0.124 14.371 15.036 Atomic orbital electron populations 1.21697 0.95360 1.02034 1.01342 1.21759 0.96854 0.93878 1.03127 1.23179 0.95438 0.94916 0.85911 0.89840 1.23022 0.94179 1.02614 0.97498 1.22943 0.96408 0.99424 0.98571 1.23243 0.89022 0.94871 0.92614 0.89270 1.20644 0.80936 0.79718 0.89631 1.90463 1.41649 1.50760 1.60544 1.40882 1.41492 1.25802 1.05885 1.19122 0.95478 1.51565 0.82989 0.92008 1.26423 0.94314 0.93578 1.04166 1.69953 0.99435 1.41943 1.39780 0.85178 0.77902 0.78900 0.77315 1.18362 1.19615 1.19996 1.18997 0.88004 0.91278 0.89514 1.22129 1.01108 0.99588 0.99336 1.21875 0.94358 0.95089 0.96786 1.22477 0.95473 1.01607 1.00401 1.23214 1.00836 0.91206 0.90361 1.67275 1.07011 1.22271 1.28268 1.88943 1.42526 1.57125 1.41615 0.91299 0.91477 0.95318 0.93092 0.87389 0.87614 0.88570 0.89342 0.92118 0.92271 0.86212 0.80814 0.80190 0.80179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.83 71.98 0.71 -2.85 16 2 C -0.12 -2.91 5.42 30.60 0.17 -2.75 16 3 C 0.06 1.80 3.41 30.97 0.11 1.90 16 4 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 5 C -0.14 -3.45 6.64 31.58 0.21 -3.24 16 6 C -0.14 -4.97 6.42 31.90 0.20 -4.77 16 7 C 0.06 2.76 3.03 30.53 0.09 2.85 16 8 H 0.09 3.60 5.28 -2.39 -0.01 3.59 16 9 C 0.50 28.50 6.46 87.66 0.57 29.06 16 10 O -0.56 -35.90 14.42 -3.01 -0.04 -35.95 16 11 N -0.42 -24.10 2.53 -464.38 -1.18 -25.28 16 12 C -0.36 -22.61 8.80 84.01 0.74 -21.87 16 13 H 0.06 3.92 7.83 -2.91 -0.02 3.90 16 14 C 0.02 1.25 5.07 84.91 0.43 1.68 16 15 N -0.88 -53.67 12.04 21.65 0.26 -53.41 16 16 Si 0.98 46.77 29.56 68.60 2.03 48.80 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 20 C 0.35 16.75 5.49 132.90 0.73 17.48 16 21 C -0.20 -7.80 7.70 22.50 0.17 -7.62 16 22 C -0.06 -1.50 10.17 22.44 0.23 -1.27 16 23 C -0.18 -4.36 10.11 22.39 0.23 -4.14 16 24 C 0.10 3.22 11.18 84.66 0.95 4.17 16 25 N -0.53 -24.03 10.36 -192.96 -2.00 -26.03 16 26 O -0.38 -16.03 10.53 -148.98 -1.57 -17.59 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.03 0.88 7.91 -2.39 -0.02 0.86 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.10 2.10 7.70 -2.38 -0.02 2.08 16 34 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.06 2.60 7.25 -2.39 -0.02 2.58 16 36 H 0.27 15.40 8.32 -92.70 -0.77 14.63 16 37 H 0.12 4.86 7.83 -2.91 -0.02 4.84 16 38 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -84.38 333.76 4.06 -80.32 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 1.03 Total: 20.50 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.53 Total: 8.64 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -2.91 Total: -104.72 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.61 Total: -53.54 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -84.38 4.06 -80.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.008 kcal (2) G-P(sol) polarization free energy of solvation -84.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds