Wall clock time and date at job start Tue Mar 31 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46879 * 2 1 4 4 H 1.08997 * 110.55151 * 307.87453 * 3 2 1 5 5 C 1.55002 * 110.61851 * 184.99626 * 3 2 1 6 6 C 1.54803 * 102.09361 * 204.31776 * 5 3 2 7 7 C 1.54100 * 104.19014 * 20.88146 * 6 5 3 8 8 H 1.08994 * 109.88146 * 242.45398 * 7 6 5 9 9 C 1.50704 * 109.87889 * 121.45118 * 7 6 5 10 10 O 1.21271 * 120.00249 * 245.00073 * 9 7 6 11 11 N 1.34778 * 119.99668 * 65.00653 * 9 7 6 12 12 C 1.37204 * 120.00241 * 359.97438 * 11 9 7 13 13 H 1.08010 * 120.00253 * 305.40447 * 12 11 9 14 14 C 1.38889 * 120.00141 * 125.68270 * 12 11 9 15 15 N 1.31420 * 120.00217 * 156.27699 * 14 12 11 16 16 Si 1.86798 * 120.00059 * 336.27753 * 14 12 11 17 17 H 1.48501 * 109.47193 * 95.28039 * 16 14 12 18 18 H 1.48503 * 109.47404 * 215.28354 * 16 14 12 19 19 H 1.48503 * 109.46846 * 335.28370 * 16 14 12 20 20 C 1.39426 * 119.99737 * 180.02562 * 11 9 7 21 21 C 1.39067 * 119.69603 * 168.07108 * 20 11 9 22 22 C 1.38388 * 119.09531 * 179.97438 * 21 20 11 23 23 C 1.38825 * 118.49222 * 359.97438 * 22 21 20 24 24 C 1.38146 * 119.31322 * 0.02562 * 23 22 21 25 25 N 1.31883 * 120.85207 * 359.73335 * 24 23 22 26 26 O 1.43746 * 107.29325 * 2.03283 * 7 6 5 27 27 H 1.09002 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47123 * 299.99916 * 1 2 3 29 29 H 1.09003 * 109.47124 * 60.00163 * 1 2 3 30 30 H 1.08992 * 109.47878 * 239.99847 * 2 1 3 31 31 H 1.09003 * 109.47124 * 119.99837 * 2 1 3 32 32 H 1.08998 * 110.90522 * 86.11623 * 5 3 2 33 33 H 1.09004 * 110.93773 * 322.52961 * 5 3 2 34 34 H 1.08996 * 110.49073 * 262.20465 * 6 5 3 35 35 H 1.09008 * 110.59905 * 139.61362 * 6 5 3 36 36 H 0.97003 * 120.00201 * 179.97438 * 15 14 12 37 37 H 1.07995 * 120.45097 * 359.97438 * 21 20 11 38 38 H 1.07999 * 120.74667 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.33876 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.57415 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0121 -0.8056 5 6 3.5844 1.4755 -0.1263 6 6 3.9329 2.8427 0.5105 7 6 2.7067 3.1770 1.3820 8 1 2.2326 4.0894 1.0204 9 6 3.1311 3.3543 2.8171 10 8 2.7394 2.5811 3.6653 11 7 3.9458 4.3724 3.1580 12 6 4.3893 5.2471 2.1984 13 1 4.8937 4.8740 1.3192 14 6 4.1946 6.6127 2.3602 15 7 4.9786 7.4662 1.7404 16 14 2.8185 7.2363 3.4587 17 1 3.3560 7.5176 4.8141 18 1 2.2513 8.4821 2.8828 19 1 1.7541 6.2050 3.5525 20 6 4.3388 4.5362 4.4856 21 6 5.3645 5.4225 4.7962 22 6 5.7442 5.5758 6.1181 23 6 5.0821 4.8348 7.0875 24 6 4.0719 3.9727 6.7071 25 7 3.7283 3.8508 5.4397 26 8 1.7929 2.0725 1.2755 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8899 1.4443 -1.1722 33 1 4.0386 0.6583 0.4341 34 1 4.0696 3.5996 -0.2618 35 1 4.8283 2.7617 1.1268 36 1 4.8424 8.4200 1.8531 37 1 5.8579 5.9835 4.0164 38 1 6.5377 6.2564 6.3892 39 1 5.3545 4.9309 8.1281 40 1 3.5537 3.3946 7.4578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892470605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:56 Heat of formation + Delta-G solvation = -27.742674 kcal Electronic energy + Delta-G solvation = -23963.374399 eV Core-core repulsion = 20550.900993 eV Total energy + Delta-G solvation = -3412.473406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26001 -39.20978 -37.57541 -35.12074 -33.41070 -32.39462 -31.75568 -31.47533 -29.73901 -27.98971 -25.35942 -24.20056 -22.66151 -22.13123 -21.36310 -20.73544 -19.26185 -18.35059 -16.61827 -16.19040 -15.94925 -15.54153 -15.03396 -14.88002 -14.72993 -14.01197 -13.70805 -13.54986 -13.43392 -13.30468 -12.96336 -12.76308 -12.58592 -12.38976 -12.33185 -11.48527 -11.42267 -11.39402 -11.20109 -11.11006 -10.84882 -10.76079 -10.45902 -10.42779 -10.17545 -9.62607 -9.47876 -9.12091 -8.96612 -8.84126 -8.11020 -7.27001 -6.74556 -4.54461 1.88070 2.09302 3.02353 3.14941 3.28613 3.56641 3.72147 4.03827 4.37223 4.54795 4.80935 4.89085 5.02037 5.19975 5.27813 5.29373 5.42683 5.47161 5.49770 5.59145 5.69657 5.79456 5.92902 5.98278 6.00616 6.00830 6.06270 6.09844 6.17257 6.34962 6.35319 6.44194 6.50276 6.57533 6.75878 6.94304 7.15430 7.29907 7.50488 7.91599 8.06002 8.59701 8.80751 9.11327 9.53027 10.30639 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.006056 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.486183 B = 4622.384528 C = 5387.053636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.073 3.927 4 H 0.068 0.932 5 C -0.152 4.152 6 C -0.130 4.130 7 C 0.081 3.919 8 H 0.097 0.903 9 C 0.495 3.505 10 O -0.499 6.499 11 N -0.405 5.405 12 C -0.379 4.379 13 H 0.116 0.884 14 C 0.097 3.903 15 N -0.836 5.836 16 Si 0.847 3.153 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.259 1.259 20 C 0.361 3.639 21 C -0.189 4.189 22 C -0.066 4.066 23 C -0.234 4.234 24 C 0.116 3.884 25 N -0.493 5.493 26 O -0.351 6.351 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.280 0.720 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -5.988 -2.030 6.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.015 3.985 4 H 0.086 0.914 5 C -0.190 4.190 6 C -0.168 4.168 7 C 0.020 3.980 8 H 0.115 0.885 9 C 0.284 3.716 10 O -0.371 6.371 11 N -0.121 5.121 12 C -0.505 4.505 13 H 0.133 0.867 14 C -0.115 4.115 15 N -0.467 5.467 16 Si 0.671 3.329 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.182 1.182 20 C 0.131 3.869 21 C -0.212 4.212 22 C -0.092 4.092 23 C -0.256 4.256 24 C -0.043 4.043 25 N -0.209 5.209 26 O -0.269 6.269 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.170 0.830 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.982 -6.868 -1.860 7.386 hybrid contribution 0.259 1.461 0.617 1.607 sum -1.723 -5.407 -1.243 5.810 Atomic orbital electron populations 1.21733 0.95503 1.01200 1.02313 1.21529 0.96541 0.94748 1.02466 1.23185 0.94289 0.94009 0.87006 0.91392 1.23220 0.96080 0.98371 1.01344 1.22784 0.98282 0.96524 0.99249 1.22305 0.90801 0.91198 0.93724 0.88542 1.20850 0.78513 0.82216 0.90059 1.90675 1.51979 1.43471 1.51006 1.41420 1.40842 1.26072 1.03766 1.19069 1.41868 0.86665 1.02915 0.86672 1.25400 0.94887 0.95978 0.95235 1.69795 1.32858 1.03493 1.40587 0.87117 0.84381 0.79695 0.81692 1.18927 1.20144 1.18224 1.19265 0.89830 0.91275 0.86519 1.21849 0.99145 1.02588 0.97632 1.21292 0.98112 0.97255 0.92526 1.21790 1.01718 1.02308 0.99808 1.22459 0.94160 0.95340 0.92299 1.67675 1.28542 1.24399 1.00257 1.88952 1.56972 1.44932 1.36069 0.93055 0.91838 0.93028 0.91016 0.91005 0.90404 0.90741 0.89443 0.90102 0.90920 0.83038 0.85723 0.86125 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.86 37.16 0.37 -1.43 16 2 C -0.12 -1.46 5.70 -26.73 -0.15 -1.61 16 3 C 0.07 1.08 3.28 -25.67 -0.08 1.00 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 5 C -0.15 -2.15 6.59 -24.72 -0.16 -2.32 16 6 C -0.13 -2.24 4.84 -25.21 -0.12 -2.36 16 7 C 0.08 1.65 3.12 -27.31 -0.09 1.57 16 8 H 0.10 1.97 8.00 -51.93 -0.42 1.56 16 9 C 0.50 12.20 6.80 -10.98 -0.07 12.13 16 10 O -0.50 -13.60 14.86 -14.01 -0.21 -13.81 16 11 N -0.41 -10.03 2.06 -60.71 -0.13 -10.16 16 12 C -0.38 -9.24 7.27 -14.91 -0.11 -9.35 16 13 H 0.12 2.79 6.04 -52.48 -0.32 2.47 16 14 C 0.10 2.42 3.92 -17.49 -0.07 2.35 16 15 N -0.84 -20.99 13.96 55.49 0.77 -20.22 16 16 Si 0.85 20.38 26.21 -169.99 -4.46 15.92 16 17 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 H -0.26 -6.69 7.11 56.52 0.40 -6.28 16 20 C 0.36 8.85 5.59 -154.64 -0.86 7.98 16 21 C -0.19 -4.20 7.80 -39.22 -0.31 -4.51 16 22 C -0.07 -1.23 10.17 -39.31 -0.40 -1.63 16 23 C -0.23 -4.10 10.11 -39.40 -0.40 -4.50 16 24 C 0.12 2.30 11.18 -17.56 -0.20 2.11 16 25 N -0.49 -12.01 7.99 -12.34 -0.10 -12.11 16 26 O -0.35 -6.99 10.31 -54.81 -0.56 -7.56 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 34 H 0.09 1.39 7.94 -51.93 -0.41 0.98 16 35 H 0.08 1.51 7.19 -51.92 -0.37 1.13 16 36 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.15 3.51 6.27 -52.49 -0.33 3.18 16 38 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 40 H 0.14 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -30.39 325.82 -8.05 -38.44 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.62 Total: 5.16 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -2.66 Total: -0.58 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.55 Total: -42.49 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.77 Total: -21.37 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.46 Total: 15.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.39 -8.05 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.698 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds