Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 C 1.52991 * 109.47291 * 120.00288 * 2 1 3 5 5 C 1.50701 * 109.47247 * 65.00053 * 4 2 1 6 6 O 1.21305 * 119.99835 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00282 * 180.02562 * 5 4 2 8 8 N 1.40100 * 119.99992 * 179.97438 * 7 5 4 9 9 C 1.29754 * 119.99741 * 179.97438 * 8 7 5 10 10 C 1.47495 * 119.99898 * 180.02562 * 9 8 7 11 11 C 1.39756 * 120.12269 * 359.97438 * 10 9 8 12 12 C 1.37975 * 119.98111 * 180.02562 * 11 10 9 13 13 C 1.38251 * 120.22776 * 359.72746 * 12 11 10 14 14 C 1.38972 * 120.25037 * 0.54994 * 13 12 11 15 15 O 1.35760 * 119.99460 * 179.72404 * 14 13 12 16 16 C 1.34837 * 116.99991 * 174.18527 * 15 14 13 17 17 H 1.07995 * 119.99773 * 5.05821 * 16 15 14 18 18 C 1.38645 * 119.99868 * 185.05741 * 16 15 14 19 19 N 1.31558 * 120.00198 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00389 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47316 * 89.99571 * 20 18 16 22 22 H 1.48497 * 109.47074 * 210.00544 * 20 18 16 23 23 H 1.48505 * 109.46806 * 329.99922 * 20 18 16 24 24 C 1.38616 * 120.01351 * 359.45290 * 14 13 12 25 25 H 1.09006 * 109.47414 * 59.99621 * 1 2 3 26 26 H 1.08995 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47095 * 299.99840 * 1 2 3 28 28 H 1.09002 * 109.46923 * 240.00674 * 2 1 3 29 29 H 1.09004 * 109.47275 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47250 * 300.00480 * 3 2 1 31 31 H 1.09000 * 109.46970 * 60.00083 * 3 2 1 32 32 H 1.08994 * 109.47704 * 304.99953 * 4 2 1 33 33 H 1.09006 * 109.47159 * 184.99525 * 4 2 1 34 34 H 0.96997 * 119.99888 * 359.97438 * 7 5 4 35 35 H 1.08000 * 120.00291 * 0.02562 * 9 8 7 36 36 H 1.08008 * 120.00907 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.88739 * 180.02562 * 12 11 10 38 38 H 1.08007 * 119.87430 * 180.27967 * 13 12 11 39 39 H 0.96998 * 120.00357 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.11499 * 180.25196 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 -2.1733 1.1887 6 8 1.0108 -2.5902 0.2400 7 7 1.9845 -3.0086 2.1893 8 7 1.6134 -4.3584 2.1333 9 6 1.9442 -5.1626 3.0964 10 6 1.5540 -6.5838 3.0372 11 6 0.8276 -7.0668 1.9454 12 6 0.4636 -8.3967 1.8933 13 6 0.8200 -9.2563 2.9157 14 6 1.5374 -8.7850 4.0087 15 8 1.8798 -9.6326 5.0124 16 6 2.6768 -9.1417 5.9830 17 1 2.9463 -8.0960 5.9829 18 6 3.1502 -9.9796 6.9810 19 7 3.9274 -9.5007 7.9282 20 14 2.6845 -11.7887 6.9808 21 1 3.6882 -12.5582 6.2025 22 1 2.6500 -12.2911 8.3778 23 1 1.3448 -11.9548 6.3619 24 6 1.9083 -7.4509 4.0715 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -0.2619 2.1369 33 1 3.1263 -0.6444 1.2950 34 1 2.4883 -2.6752 2.9481 35 1 2.5052 -4.7914 3.9413 36 1 0.5511 -6.3993 1.1426 37 1 -0.0974 -8.7684 1.0486 38 1 0.5360 -10.2973 2.8669 39 1 4.2584 -10.0868 8.6267 40 1 2.4693 -7.0838 4.9181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915950572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -9.736491 kcal Electronic energy + Delta-G solvation = -21443.996680 eV Core-core repulsion = 18032.304081 eV Total energy + Delta-G solvation = -3411.692599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94514 -39.24333 -37.27594 -36.27698 -35.48342 -32.82540 -32.32343 -30.19671 -29.14479 -28.01985 -27.34975 -25.29778 -23.71020 -21.64968 -21.29072 -20.40121 -19.94410 -18.09220 -17.63079 -16.87488 -16.70132 -15.93743 -15.24732 -15.03548 -14.81004 -14.28657 -14.15037 -13.91897 -13.88211 -13.74362 -12.98666 -12.91730 -12.62078 -12.41093 -12.35128 -12.22152 -12.15571 -11.48441 -11.32456 -11.16137 -10.99780 -10.97781 -10.93190 -10.83015 -10.26940 -10.18847 -9.87584 -9.50604 -9.36216 -8.89601 -7.96905 -7.43703 -6.46510 -4.14145 1.13591 2.17541 2.40638 2.44137 2.98127 3.19766 3.23629 3.37757 4.19988 4.32335 4.43949 4.47501 4.59196 4.73694 4.82776 4.94429 5.04894 5.09034 5.15351 5.22139 5.32240 5.41184 5.60530 5.61409 5.67179 5.69385 5.83680 5.85193 6.01494 6.06814 6.18578 6.21636 6.45290 6.58555 7.00165 7.03140 7.10014 7.12702 7.48477 7.53923 7.70728 7.96939 8.36354 8.88820 9.50014 10.61049 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.002563 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.304684 B =10923.242587 C =11706.127806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.081 4.081 3 C -0.148 4.148 4 C -0.132 4.132 5 C 0.528 3.472 6 O -0.504 6.504 7 N -0.590 5.590 8 N -0.243 5.243 9 C 0.131 3.869 10 C -0.025 4.025 11 C -0.156 4.156 12 C -0.087 4.087 13 C -0.170 4.170 14 C 0.152 3.848 15 O -0.217 6.217 16 C -0.391 4.391 17 H 0.106 0.894 18 C 0.064 3.936 19 N -0.880 5.880 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.187 4.187 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.383 0.617 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.280 0.720 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.718 16.386 -10.438 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.174 4.174 5 C 0.315 3.685 6 O -0.376 6.376 7 N -0.332 5.332 8 N -0.047 5.047 9 C -0.079 4.079 10 C -0.028 4.028 11 C -0.177 4.177 12 C -0.105 4.105 13 C -0.190 4.190 14 C 0.100 3.900 15 O -0.122 6.122 16 C -0.467 4.467 17 H 0.123 0.877 18 C -0.139 4.139 19 N -0.518 5.518 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.209 4.209 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.220 0.780 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.527 16.106 -11.769 20.257 hybrid contribution 0.815 -0.359 1.555 1.792 sum -2.712 15.747 -10.214 18.965 Atomic orbital electron populations 1.21983 0.94572 1.03592 1.01138 1.20876 0.96811 0.95365 0.96947 1.21863 1.00906 0.95631 1.02101 1.21800 1.03166 0.90879 1.01506 1.20679 0.79205 0.87253 0.81365 1.90687 1.37394 1.77438 1.32069 1.47130 1.56326 1.05870 1.23836 1.75017 1.16652 0.89337 1.23680 1.24636 0.95460 0.93539 0.94251 1.18018 1.00023 0.88912 0.95802 1.20954 1.02294 0.95722 0.98722 1.20653 0.99200 0.93095 0.97598 1.20423 1.04516 1.00210 0.93862 1.18902 0.93853 0.89031 0.88186 1.83608 1.60741 1.37613 1.30237 1.20724 1.25963 0.97487 1.02515 0.87667 1.24454 0.95021 1.00053 0.94409 1.69637 1.31964 1.37048 1.13120 0.86182 0.80341 0.83012 0.77392 1.19865 1.20810 1.18304 1.21317 1.06110 0.93227 1.00249 0.92794 0.90605 0.93295 0.90211 0.92612 0.92254 0.92579 0.88575 0.88576 0.78000 0.86586 0.85994 0.86322 0.86204 0.91022 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.93 37.15 0.33 -1.10 16 2 C -0.08 -0.66 2.57 -90.63 -0.23 -0.90 16 3 C -0.15 -0.88 9.19 37.16 0.34 -0.54 16 4 C -0.13 -1.01 5.17 -27.89 -0.14 -1.15 16 5 C 0.53 6.53 7.66 -10.98 -0.08 6.45 16 6 O -0.50 -8.30 14.30 5.54 0.08 -8.22 16 7 N -0.59 -7.24 6.26 31.22 0.20 -7.05 16 8 N -0.24 -3.83 10.15 32.16 0.33 -3.50 16 9 C 0.13 1.99 10.75 -14.66 -0.16 1.83 16 10 C -0.02 -0.44 5.87 -105.07 -0.62 -1.06 16 11 C -0.16 -2.71 9.58 -39.11 -0.37 -3.09 16 12 C -0.09 -1.46 10.02 -39.67 -0.40 -1.86 16 13 C -0.17 -3.20 9.98 -39.30 -0.39 -3.60 16 14 C 0.15 3.33 6.64 -39.17 -0.26 3.07 16 15 O -0.22 -5.46 8.58 0.00 0.00 -5.46 16 16 C -0.39 -10.53 9.94 30.88 0.31 -10.23 16 17 H 0.11 2.85 5.43 -52.49 -0.29 2.56 16 18 C 0.06 1.73 5.49 -17.52 -0.10 1.64 16 19 N -0.88 -24.61 13.96 55.48 0.77 -23.84 16 20 Si 0.91 21.06 28.62 -169.99 -4.86 16.19 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.19 -3.76 8.91 -38.96 -0.35 -4.11 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.91 5.95 -51.93 -0.31 0.61 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.77 7.96 -51.93 -0.41 0.35 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.38 3.28 8.65 -182.60 -1.58 1.70 16 35 H 0.12 1.43 8.02 -52.49 -0.42 1.01 16 36 H 0.12 2.07 7.55 -52.48 -0.40 1.68 16 37 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 38 H 0.12 2.08 8.06 -52.48 -0.42 1.65 16 39 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.14 2.83 5.63 -52.49 -0.30 2.53 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -31.61 344.53 -7.06 -38.67 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.64 Total: 2.65 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.12 Total: -14.63 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 1.30 Total: -34.39 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.86 Total: 16.19 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.61 -7.06 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915950572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.929 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds