Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 C 1.52991 * 109.47291 * 120.00288 * 2 1 3 5 5 C 1.50701 * 109.47247 * 65.00053 * 4 2 1 6 6 O 1.21305 * 119.99835 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00282 * 180.02562 * 5 4 2 8 8 N 1.40100 * 119.99992 * 179.97438 * 7 5 4 9 9 C 1.29754 * 119.99741 * 179.97438 * 8 7 5 10 10 C 1.47495 * 119.99898 * 180.02562 * 9 8 7 11 11 C 1.39756 * 120.12269 * 359.97438 * 10 9 8 12 12 C 1.37975 * 119.98111 * 180.02562 * 11 10 9 13 13 C 1.38251 * 120.22776 * 359.72746 * 12 11 10 14 14 C 1.38972 * 120.25037 * 0.54994 * 13 12 11 15 15 O 1.35760 * 119.99460 * 179.72404 * 14 13 12 16 16 C 1.34837 * 116.99991 * 174.18527 * 15 14 13 17 17 H 1.07995 * 119.99773 * 5.05821 * 16 15 14 18 18 C 1.38645 * 119.99868 * 185.05741 * 16 15 14 19 19 N 1.31558 * 120.00198 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00389 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47316 * 89.99571 * 20 18 16 22 22 H 1.48497 * 109.47074 * 210.00544 * 20 18 16 23 23 H 1.48505 * 109.46806 * 329.99922 * 20 18 16 24 24 C 1.38616 * 120.01351 * 359.45290 * 14 13 12 25 25 H 1.09006 * 109.47414 * 59.99621 * 1 2 3 26 26 H 1.08995 * 109.47348 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47095 * 299.99840 * 1 2 3 28 28 H 1.09002 * 109.46923 * 240.00674 * 2 1 3 29 29 H 1.09004 * 109.47275 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47250 * 300.00480 * 3 2 1 31 31 H 1.09000 * 109.46970 * 60.00083 * 3 2 1 32 32 H 1.08994 * 109.47704 * 304.99953 * 4 2 1 33 33 H 1.09006 * 109.47159 * 184.99525 * 4 2 1 34 34 H 0.96997 * 119.99888 * 359.97438 * 7 5 4 35 35 H 1.08000 * 120.00291 * 0.02562 * 9 8 7 36 36 H 1.08008 * 120.00907 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.88739 * 180.02562 * 12 11 10 38 38 H 1.08007 * 119.87430 * 180.27967 * 13 12 11 39 39 H 0.96998 * 120.00357 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.11499 * 180.25196 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 -2.1733 1.1887 6 8 1.0108 -2.5902 0.2400 7 7 1.9845 -3.0086 2.1893 8 7 1.6134 -4.3584 2.1333 9 6 1.9442 -5.1626 3.0964 10 6 1.5540 -6.5838 3.0372 11 6 0.8276 -7.0668 1.9454 12 6 0.4636 -8.3967 1.8933 13 6 0.8200 -9.2563 2.9157 14 6 1.5374 -8.7850 4.0087 15 8 1.8798 -9.6326 5.0124 16 6 2.6768 -9.1417 5.9830 17 1 2.9463 -8.0960 5.9829 18 6 3.1502 -9.9796 6.9810 19 7 3.9274 -9.5007 7.9282 20 14 2.6845 -11.7887 6.9808 21 1 3.6882 -12.5582 6.2025 22 1 2.6500 -12.2911 8.3778 23 1 1.3448 -11.9548 6.3619 24 6 1.9083 -7.4509 4.0715 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6054 -0.2619 2.1369 33 1 3.1263 -0.6444 1.2950 34 1 2.4883 -2.6752 2.9481 35 1 2.5052 -4.7914 3.9413 36 1 0.5511 -6.3993 1.1426 37 1 -0.0974 -8.7684 1.0486 38 1 0.5360 -10.2973 2.8669 39 1 4.2584 -10.0868 8.6267 40 1 2.4693 -7.0838 4.9181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915950572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -29.304131 kcal Electronic energy + Delta-G solvation = -21444.845197 eV Core-core repulsion = 18032.304081 eV Total energy + Delta-G solvation = -3412.541116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99910 -40.80768 -38.71444 -37.49344 -36.34648 -34.47840 -33.85845 -31.53114 -30.64225 -28.88487 -27.95271 -27.18262 -25.00610 -23.19205 -22.30047 -21.65181 -20.80424 -19.86136 -19.03040 -18.02597 -17.99557 -16.85079 -16.76306 -16.45110 -15.93899 -15.71322 -15.51172 -15.45500 -15.03296 -14.77390 -14.40283 -14.14376 -14.05610 -13.97298 -13.37802 -13.08217 -12.95050 -12.75698 -12.57636 -12.50278 -12.44546 -12.08674 -11.99347 -11.79576 -11.59425 -11.46446 -11.27657 -10.92182 -10.88779 -10.52857 -9.38515 -9.01596 -8.46448 -6.18778 -0.21306 0.65605 1.21089 1.35710 1.39186 1.45216 1.55444 1.84632 2.31292 2.82946 3.06689 3.19008 3.48442 3.64130 3.81370 3.98282 4.00482 4.23759 4.31133 4.35358 4.36825 4.57507 4.63835 4.68163 4.71109 4.77626 4.85526 4.94075 5.04526 5.10153 5.11961 5.30043 5.40603 5.44688 5.50617 5.58612 5.62974 5.77526 5.88159 6.10686 6.18787 6.47426 6.88466 7.36973 7.61614 8.64589 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.002563 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.304684 B =10923.242587 C =11706.127806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.122 4.122 5 C 0.522 3.478 6 O -0.550 6.550 7 N -0.581 5.581 8 N -0.265 5.265 9 C 0.127 3.873 10 C -0.024 4.024 11 C -0.149 4.149 12 C -0.075 4.075 13 C -0.169 4.169 14 C 0.118 3.882 15 O -0.242 6.242 16 C -0.397 4.397 17 H 0.088 0.912 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.271 1.271 23 H -0.262 1.262 24 C -0.196 4.196 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.404 0.596 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.159 0.841 38 H 0.136 0.864 39 H 0.284 0.716 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 17.729 -11.635 21.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.101 4.101 3 C -0.199 4.199 4 C -0.163 4.163 5 C 0.312 3.688 6 O -0.425 6.425 7 N -0.326 5.326 8 N -0.069 5.069 9 C -0.083 4.083 10 C -0.027 4.027 11 C -0.170 4.170 12 C -0.093 4.093 13 C -0.189 4.189 14 C 0.069 3.931 15 O -0.150 6.150 16 C -0.473 4.473 17 H 0.106 0.894 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.196 1.196 23 H -0.186 1.186 24 C -0.218 4.218 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.245 0.755 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.093 0.907 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.900 17.482 -12.980 22.120 hybrid contribution 0.819 -0.516 1.637 1.902 sum -3.081 16.966 -11.343 20.640 Atomic orbital electron populations 1.21953 0.95613 1.01601 1.02027 1.20882 0.95965 0.96838 0.96448 1.21810 1.01580 0.93723 1.02758 1.21899 1.05043 0.87063 1.02285 1.21713 0.77980 0.88809 0.80329 1.90676 1.39467 1.78503 1.33877 1.47124 1.56228 1.04422 1.24795 1.74861 1.16571 0.91304 1.24184 1.24510 0.96208 0.92355 0.95254 1.18192 0.99309 0.90197 0.94986 1.21243 1.01059 0.96297 0.98395 1.21069 0.98089 0.92352 0.97792 1.20721 1.03542 1.01494 0.93172 1.19437 0.95289 0.89642 0.88746 1.83558 1.61898 1.38440 1.31100 1.20722 1.26276 0.97016 1.03302 0.89424 1.25211 0.95243 1.04045 0.94210 1.69715 1.33836 1.38509 1.14217 0.85280 0.79753 0.78274 0.77848 1.19264 1.19579 1.18589 1.21279 1.06494 0.93248 1.00733 0.92427 0.93900 0.91949 0.92264 0.91484 0.92221 0.91358 0.85857 0.85693 0.75546 0.84143 0.85149 0.82335 0.84622 0.90677 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.93 71.98 0.64 -2.04 16 2 C -0.08 -1.19 2.57 -10.80 -0.03 -1.22 16 3 C -0.14 -1.26 9.19 71.98 0.66 -0.60 16 4 C -0.12 -1.51 5.17 29.85 0.15 -1.35 16 5 C 0.52 12.09 7.66 87.66 0.67 12.77 16 6 O -0.55 -18.02 14.30 -3.11 -0.04 -18.06 16 7 N -0.58 -13.14 6.26 -173.51 -1.09 -14.22 16 8 N -0.27 -7.97 10.15 -52.16 -0.53 -8.50 16 9 C 0.13 3.70 10.75 87.44 0.94 4.64 16 10 C -0.02 -0.85 5.87 -20.16 -0.12 -0.97 16 11 C -0.15 -4.90 9.58 22.57 0.22 -4.68 16 12 C -0.08 -2.31 10.02 22.21 0.22 -2.09 16 13 C -0.17 -6.15 9.98 22.45 0.22 -5.93 16 14 C 0.12 5.21 6.64 22.54 0.15 5.36 16 15 O -0.24 -12.50 8.58 -22.93 -0.20 -12.70 16 16 C -0.40 -22.18 9.94 67.92 0.68 -21.51 16 17 H 0.09 5.02 5.43 -2.91 -0.02 5.01 16 18 C 0.01 0.64 5.49 84.83 0.47 1.10 16 19 N -0.92 -53.16 13.96 21.61 0.30 -52.86 16 20 Si 0.97 44.01 28.62 68.60 1.96 45.98 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 24 C -0.20 -8.01 8.91 22.67 0.20 -7.81 16 25 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.04 1.04 5.95 -2.39 -0.01 1.02 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.10 7.96 -2.39 -0.02 1.08 16 29 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.13 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.40 5.83 8.65 -213.32 -1.85 3.98 16 35 H 0.14 3.29 8.02 -2.91 -0.02 3.26 16 36 H 0.13 4.14 7.55 -2.91 -0.02 4.12 16 37 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 39 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.13 5.40 5.63 -2.91 -0.02 5.39 16 Total: -1.00 -71.42 344.53 4.70 -66.72 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.79 Total: 17.96 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 5.08 Total: -24.32 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.31 Total: -75.58 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.24 Total: -30.76 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.96 Total: 45.98 kcal Total: -71.42 4.70 -66.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915950572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.420 kcal (2) G-P(sol) polarization free energy of solvation -71.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds