Wall clock time and date at job start Tue Mar 31 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47423 * 2 1 4 4 C 1.53007 * 109.47196 * 239.99722 * 2 1 3 5 5 C 1.50701 * 109.47247 * 120.00022 * 2 1 3 6 6 O 1.21305 * 119.99835 * 359.97438 * 5 2 1 7 7 N 1.34778 * 120.00282 * 180.02562 * 5 2 1 8 8 N 1.40100 * 119.99992 * 179.97438 * 7 5 2 9 9 C 1.29754 * 119.99741 * 179.97438 * 8 7 5 10 10 C 1.47495 * 119.99898 * 180.02562 * 9 8 7 11 11 C 1.39756 * 120.12269 * 359.97438 * 10 9 8 12 12 C 1.37975 * 119.98111 * 180.02562 * 11 10 9 13 13 C 1.38251 * 120.22776 * 359.72746 * 12 11 10 14 14 C 1.38972 * 120.25037 * 0.54994 * 13 12 11 15 15 O 1.35760 * 119.99460 * 179.72404 * 14 13 12 16 16 C 1.34837 * 116.99991 * 174.18527 * 15 14 13 17 17 H 1.07995 * 119.99773 * 5.05821 * 16 15 14 18 18 C 1.38645 * 119.99868 * 185.05741 * 16 15 14 19 19 N 1.31558 * 120.00198 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00389 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47316 * 89.99571 * 20 18 16 22 22 H 1.48497 * 109.47074 * 210.00544 * 20 18 16 23 23 H 1.48505 * 109.46806 * 329.99922 * 20 18 16 24 24 C 1.38616 * 120.01351 * 359.45290 * 14 13 12 25 25 H 1.08998 * 109.47315 * 300.00183 * 1 2 3 26 26 H 1.09005 * 109.47147 * 60.00341 * 1 2 3 27 27 H 1.09007 * 109.47595 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47342 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46680 * 299.99945 * 3 2 1 30 30 H 1.08998 * 109.47025 * 59.99639 * 3 2 1 31 31 H 1.09005 * 109.46963 * 299.99911 * 4 2 1 32 32 H 1.08996 * 109.46941 * 59.99694 * 4 2 1 33 33 H 1.09003 * 109.47012 * 180.02562 * 4 2 1 34 34 H 0.96997 * 119.99888 * 359.97438 * 7 5 2 35 35 H 1.08000 * 120.00291 * 0.02562 * 9 8 7 36 36 H 1.08008 * 120.00907 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.88739 * 180.02562 * 12 11 10 38 38 H 1.08007 * 119.87430 * 180.27967 * 13 12 11 39 39 H 0.96998 * 120.00357 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.11499 * 180.25196 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2440 -1.1710 2.0292 7 7 3.3574 -0.8331 1.4440 8 7 3.8243 -1.4931 2.5882 9 6 5.1000 -1.6116 2.7935 10 6 5.5917 -2.3069 3.9978 11 6 4.6858 -2.8386 4.9197 12 6 5.1489 -3.4880 6.0456 13 6 6.5077 -3.6202 6.2633 14 6 7.4170 -3.0902 5.3558 15 8 8.7503 -3.2182 5.5776 16 6 9.5770 -2.7897 4.6023 17 1 9.1737 -2.2937 3.7319 18 6 10.9447 -2.9859 4.7171 19 7 11.7514 -2.5674 3.7659 20 14 11.6421 -3.8446 6.2224 21 1 11.7040 -5.3073 5.9737 22 1 13.0081 -3.3307 6.4968 23 1 10.7685 -3.5781 7.3934 24 6 6.9630 -2.4358 4.2213 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 -1.7490 -1.2492 32 1 1.6766 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.9877 -0.4645 0.8056 35 1 5.8019 -1.2012 2.0827 36 1 3.6234 -2.7411 4.7509 37 1 4.4475 -3.8986 6.7568 38 1 6.8640 -4.1336 7.1442 39 1 12.7083 -2.7044 3.8463 40 1 7.6682 -2.0269 3.5129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915966192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:21 Heat of formation + Delta-G solvation = -7.394019 kcal Electronic energy + Delta-G solvation = -21800.671653 eV Core-core repulsion = 18389.080631 eV Total energy + Delta-G solvation = -3411.591022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23973 -39.24796 -37.24377 -36.13987 -35.74705 -32.69987 -32.26167 -29.93074 -28.97804 -27.77210 -27.44828 -25.35019 -24.33405 -22.59651 -21.60566 -20.32949 -19.58963 -18.08325 -17.41138 -16.82224 -16.68954 -15.44794 -15.24578 -15.06504 -14.75052 -14.27553 -14.05051 -13.96892 -13.85896 -13.74056 -12.94372 -12.75281 -12.73553 -12.45227 -12.36954 -12.28450 -12.20918 -12.09375 -11.41606 -11.34547 -11.31636 -10.99746 -10.92813 -10.83564 -10.26744 -10.17705 -9.84662 -9.50340 -9.36886 -8.89492 -7.96805 -7.43529 -6.46412 -4.14053 1.13691 2.17742 2.40446 2.42377 2.98121 3.19854 3.23724 3.37870 4.15015 4.20187 4.34627 4.46452 4.48757 4.73129 4.78850 4.82993 5.04962 5.08903 5.13244 5.21406 5.30425 5.41759 5.50619 5.52033 5.60327 5.67357 5.69986 5.81205 5.84547 5.95924 6.01766 6.19474 6.45370 6.58712 6.99782 7.03230 7.10072 7.12762 7.48603 7.52970 7.70830 7.97064 8.35863 8.88949 9.50152 10.61174 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.002885 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.631354 B = 9703.911993 C =10575.307284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.538 3.462 6 O -0.506 6.506 7 N -0.585 5.585 8 N -0.243 5.243 9 C 0.131 3.869 10 C -0.025 4.025 11 C -0.156 4.156 12 C -0.087 4.087 13 C -0.170 4.170 14 C 0.152 3.848 15 O -0.217 6.217 16 C -0.392 4.392 17 H 0.106 0.894 18 C 0.064 3.936 19 N -0.880 5.880 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.187 4.187 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.382 0.618 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.280 0.720 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.900 5.493 -8.282 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.085 4.085 3 C -0.201 4.201 4 C -0.201 4.201 5 C 0.324 3.676 6 O -0.378 6.378 7 N -0.327 5.327 8 N -0.046 5.046 9 C -0.079 4.079 10 C -0.027 4.027 11 C -0.177 4.177 12 C -0.105 4.105 13 C -0.190 4.190 14 C 0.101 3.899 15 O -0.122 6.122 16 C -0.467 4.467 17 H 0.123 0.877 18 C -0.139 4.139 19 N -0.518 5.518 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.209 4.209 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.220 0.780 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.122 4.987 -7.408 19.311 hybrid contribution 1.684 0.199 -0.416 1.746 sum -15.438 5.186 -7.824 18.068 Atomic orbital electron populations 1.21679 0.91390 1.03162 1.02315 1.20850 0.98383 0.96381 0.92926 1.21908 1.01263 0.93606 1.03280 1.21911 1.01268 1.00895 0.95991 1.20524 0.80321 0.79399 0.87305 1.90708 1.54554 1.46290 1.46219 1.47059 1.07992 1.56366 1.21286 1.75021 1.16391 1.10249 1.02975 1.24636 0.91208 0.95330 0.96711 1.18016 0.92784 0.99359 0.92589 1.20955 0.99092 1.02390 0.95255 1.20652 0.94224 0.98589 0.97068 1.20424 0.92020 1.05612 1.00965 1.18898 0.84410 0.93678 0.92956 1.83608 1.11764 1.74023 1.42805 1.20725 0.87760 1.38255 0.99963 0.87672 1.24450 0.94716 0.96551 0.98187 1.69637 1.04549 1.45057 1.32542 0.86185 0.78165 0.79767 0.82828 1.19865 1.20809 1.18297 1.21314 0.94040 1.05251 1.00282 0.91701 0.91686 0.91694 0.92141 0.90931 0.91743 0.91742 0.90926 0.92137 0.78031 0.86611 0.85994 0.86318 0.86202 0.91022 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 7.76 37.15 0.29 -0.78 16 2 C -0.08 -0.70 0.87 -155.66 -0.14 -0.83 16 3 C -0.14 -0.97 8.37 37.16 0.31 -0.66 16 4 C -0.14 -0.97 8.37 37.16 0.31 -0.66 16 5 C 0.54 7.12 6.60 -10.98 -0.07 7.05 16 6 O -0.51 -8.91 16.32 5.54 0.09 -8.82 16 7 N -0.59 -7.51 6.05 31.22 0.19 -7.32 16 8 N -0.24 -3.89 10.15 32.16 0.33 -3.57 16 9 C 0.13 2.01 10.75 -14.66 -0.16 1.86 16 10 C -0.02 -0.45 5.87 -105.07 -0.62 -1.06 16 11 C -0.16 -2.73 9.58 -39.11 -0.37 -3.10 16 12 C -0.09 -1.46 10.02 -39.67 -0.40 -1.86 16 13 C -0.17 -3.21 9.98 -39.30 -0.39 -3.61 16 14 C 0.15 3.34 6.64 -39.17 -0.26 3.08 16 15 O -0.22 -5.46 8.58 0.00 0.00 -5.46 16 16 C -0.39 -10.55 9.94 30.88 0.31 -10.24 16 17 H 0.11 2.85 5.43 -52.49 -0.29 2.56 16 18 C 0.06 1.74 5.49 -17.52 -0.10 1.65 16 19 N -0.88 -24.63 13.96 55.48 0.77 -23.85 16 20 Si 0.91 21.07 28.62 -169.99 -4.86 16.20 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.19 -3.77 8.91 -38.96 -0.35 -4.12 16 25 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 28 H 0.06 0.37 7.56 -51.93 -0.39 -0.03 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 7.56 -51.93 -0.39 -0.02 16 34 H 0.38 3.60 7.49 -182.60 -1.37 2.23 16 35 H 0.12 1.45 8.02 -52.49 -0.42 1.03 16 36 H 0.12 2.09 7.55 -52.48 -0.40 1.70 16 37 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 39 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.14 2.83 5.63 -52.49 -0.30 2.54 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -31.86 344.74 -6.41 -38.26 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.49 Total: 2.65 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -1.63 Total: -13.28 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 1.29 Total: -34.74 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.29 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.86 -6.41 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915966192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.870 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds