Wall clock time and date at job start Tue Mar 31 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47423 * 2 1 4 4 C 1.53007 * 109.47196 * 239.99722 * 2 1 3 5 5 C 1.50701 * 109.47247 * 120.00022 * 2 1 3 6 6 O 1.21305 * 119.99835 * 359.97438 * 5 2 1 7 7 N 1.34778 * 120.00282 * 180.02562 * 5 2 1 8 8 N 1.40100 * 119.99992 * 179.97438 * 7 5 2 9 9 C 1.29754 * 119.99741 * 179.97438 * 8 7 5 10 10 C 1.47495 * 119.99898 * 180.02562 * 9 8 7 11 11 C 1.39756 * 120.12269 * 359.97438 * 10 9 8 12 12 C 1.37975 * 119.98111 * 180.02562 * 11 10 9 13 13 C 1.38251 * 120.22776 * 359.72746 * 12 11 10 14 14 C 1.38972 * 120.25037 * 0.54994 * 13 12 11 15 15 O 1.35760 * 119.99460 * 179.72404 * 14 13 12 16 16 C 1.34837 * 116.99991 * 174.18527 * 15 14 13 17 17 H 1.07995 * 119.99773 * 5.05821 * 16 15 14 18 18 C 1.38645 * 119.99868 * 185.05741 * 16 15 14 19 19 N 1.31558 * 120.00198 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00389 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47316 * 89.99571 * 20 18 16 22 22 H 1.48497 * 109.47074 * 210.00544 * 20 18 16 23 23 H 1.48505 * 109.46806 * 329.99922 * 20 18 16 24 24 C 1.38616 * 120.01351 * 359.45290 * 14 13 12 25 25 H 1.08998 * 109.47315 * 300.00183 * 1 2 3 26 26 H 1.09005 * 109.47147 * 60.00341 * 1 2 3 27 27 H 1.09007 * 109.47595 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47342 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46680 * 299.99945 * 3 2 1 30 30 H 1.08998 * 109.47025 * 59.99639 * 3 2 1 31 31 H 1.09005 * 109.46963 * 299.99911 * 4 2 1 32 32 H 1.08996 * 109.46941 * 59.99694 * 4 2 1 33 33 H 1.09003 * 109.47012 * 180.02562 * 4 2 1 34 34 H 0.96997 * 119.99888 * 359.97438 * 7 5 2 35 35 H 1.08000 * 120.00291 * 0.02562 * 9 8 7 36 36 H 1.08008 * 120.00907 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.88739 * 180.02562 * 12 11 10 38 38 H 1.08007 * 119.87430 * 180.27967 * 13 12 11 39 39 H 0.96998 * 120.00357 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.11499 * 180.25196 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2440 -1.1710 2.0292 7 7 3.3574 -0.8331 1.4440 8 7 3.8243 -1.4931 2.5882 9 6 5.1000 -1.6116 2.7935 10 6 5.5917 -2.3069 3.9978 11 6 4.6858 -2.8386 4.9197 12 6 5.1489 -3.4880 6.0456 13 6 6.5077 -3.6202 6.2633 14 6 7.4170 -3.0902 5.3558 15 8 8.7503 -3.2182 5.5776 16 6 9.5770 -2.7897 4.6023 17 1 9.1737 -2.2937 3.7319 18 6 10.9447 -2.9859 4.7171 19 7 11.7514 -2.5674 3.7659 20 14 11.6421 -3.8446 6.2224 21 1 11.7040 -5.3073 5.9737 22 1 13.0081 -3.3307 6.4968 23 1 10.7685 -3.5781 7.3934 24 6 6.9630 -2.4358 4.2213 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 -1.7490 -1.2492 32 1 1.6766 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.9877 -0.4645 0.8056 35 1 5.8019 -1.2012 2.0827 36 1 3.6234 -2.7411 4.7509 37 1 4.4475 -3.8986 6.7568 38 1 6.8640 -4.1336 7.1442 39 1 12.7083 -2.7044 3.8463 40 1 7.6682 -2.0269 3.5129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915966192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:20 Heat of formation + Delta-G solvation = -27.317341 kcal Electronic energy + Delta-G solvation = -21801.535593 eV Core-core repulsion = 18389.080631 eV Total energy + Delta-G solvation = -3412.454962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26567 -40.86968 -38.72506 -37.41691 -36.68531 -34.46921 -33.72638 -31.35168 -30.51042 -28.29144 -28.10109 -27.22669 -25.56082 -23.72512 -23.17513 -21.68247 -20.63443 -19.87131 -18.86583 -18.06870 -17.78920 -16.85555 -16.48211 -16.42002 -15.95828 -15.70263 -15.49292 -15.46114 -14.87402 -14.78472 -14.43701 -14.15018 -13.99524 -13.86319 -13.39304 -13.12941 -12.97482 -12.97310 -12.68712 -12.58102 -12.51496 -12.45307 -12.00030 -11.98506 -11.95089 -11.47280 -11.29647 -10.92622 -10.89634 -10.57150 -9.40457 -9.03077 -8.46535 -6.18943 -0.23312 0.65082 1.16930 1.35361 1.38311 1.39139 1.55446 1.79175 2.31289 2.82621 3.06126 3.18439 3.31219 3.59295 3.73048 3.84291 3.91540 4.14031 4.23488 4.32454 4.34890 4.56183 4.66124 4.66213 4.75014 4.76849 4.88946 4.90021 4.93554 4.94916 5.10905 5.16939 5.27404 5.30666 5.40180 5.57350 5.61779 5.77056 5.87718 6.03087 6.18254 6.40219 6.88393 7.29349 7.61370 8.64530 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.002885 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.631354 B = 9703.911993 C =10575.307284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.142 4.142 4 C -0.142 4.142 5 C 0.532 3.468 6 O -0.557 6.557 7 N -0.576 5.576 8 N -0.266 5.266 9 C 0.129 3.871 10 C -0.025 4.025 11 C -0.149 4.149 12 C -0.075 4.075 13 C -0.169 4.169 14 C 0.119 3.881 15 O -0.242 6.242 16 C -0.397 4.397 17 H 0.088 0.912 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.271 1.271 23 H -0.261 1.261 24 C -0.195 4.195 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.159 0.841 38 H 0.136 0.864 39 H 0.284 0.716 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.491 5.807 -8.744 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.321 3.679 6 O -0.431 6.431 7 N -0.319 5.319 8 N -0.070 5.070 9 C -0.081 4.081 10 C -0.028 4.028 11 C -0.170 4.170 12 C -0.093 4.093 13 C -0.189 4.189 14 C 0.070 3.930 15 O -0.150 6.150 16 C -0.474 4.474 17 H 0.106 0.894 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.196 1.196 23 H -0.186 1.186 24 C -0.217 4.217 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.242 0.758 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.093 0.907 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.734 5.314 -7.889 21.010 hybrid contribution 1.807 0.148 -0.339 1.845 sum -16.926 5.462 -8.228 19.597 Atomic orbital electron populations 1.21713 0.91297 1.02444 1.03106 1.20933 0.98386 0.97190 0.91200 1.21946 1.01862 0.92024 1.04068 1.21949 1.01857 1.00291 0.95814 1.21615 0.79764 0.78491 0.88049 1.90681 1.55704 1.48509 1.48255 1.47029 1.08525 1.55718 1.20672 1.74886 1.16834 1.10457 1.04790 1.24538 0.91632 0.95460 0.96428 1.18181 0.91853 0.99043 0.93691 1.21243 0.99421 1.01210 0.95108 1.21068 0.93885 0.97132 0.97190 1.20728 0.92414 1.04953 1.00771 1.19425 0.83785 0.95190 0.94636 1.83558 1.13030 1.75787 1.42583 1.20725 0.88471 1.38114 1.00054 0.89424 1.25201 0.95032 0.97482 1.00899 1.69714 1.04978 1.47176 1.34415 0.85286 0.77715 0.78879 0.79320 1.19268 1.19585 1.18566 1.21275 0.94947 1.05545 0.99886 0.93201 0.88550 0.93212 0.91263 0.88248 0.92889 0.92913 0.88238 0.91273 0.75793 0.84115 0.85198 0.82310 0.84577 0.90669 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 7.76 71.98 0.56 -1.39 16 2 C -0.07 -1.10 0.87 -52.93 -0.05 -1.15 16 3 C -0.14 -1.51 8.37 71.98 0.60 -0.91 16 4 C -0.14 -1.52 8.37 71.98 0.60 -0.92 16 5 C 0.53 13.58 6.60 87.66 0.58 14.16 16 6 O -0.56 -19.67 16.32 -3.11 -0.05 -19.72 16 7 N -0.58 -13.97 6.05 -173.51 -1.05 -15.02 16 8 N -0.27 -8.21 10.15 -52.16 -0.53 -8.74 16 9 C 0.13 3.83 10.75 87.44 0.94 4.77 16 10 C -0.03 -0.88 5.87 -20.16 -0.12 -1.00 16 11 C -0.15 -4.92 9.58 22.57 0.22 -4.71 16 12 C -0.07 -2.31 10.02 22.21 0.22 -2.08 16 13 C -0.17 -6.12 9.98 22.45 0.22 -5.90 16 14 C 0.12 5.24 6.64 22.54 0.15 5.39 16 15 O -0.24 -12.46 8.58 -22.93 -0.20 -12.66 16 16 C -0.40 -22.19 9.94 67.92 0.68 -21.51 16 17 H 0.09 5.02 5.43 -2.91 -0.02 5.00 16 18 C 0.01 0.69 5.49 84.83 0.47 1.16 16 19 N -0.92 -53.12 13.96 21.61 0.30 -52.81 16 20 Si 0.97 43.94 28.62 68.60 1.96 45.91 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 24 C -0.19 -7.97 8.91 22.67 0.20 -7.77 16 25 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 26 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.90 8.10 -2.38 -0.02 0.88 16 28 H 0.07 0.62 7.56 -2.39 -0.02 0.61 16 29 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.63 7.56 -2.39 -0.02 0.61 16 34 H 0.40 6.70 7.49 -213.32 -1.60 5.11 16 35 H 0.14 3.35 8.02 -2.91 -0.02 3.33 16 36 H 0.13 4.17 7.55 -2.91 -0.02 4.15 16 37 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.13 5.41 5.63 -2.91 -0.02 5.40 16 Total: -1.00 -71.61 344.74 5.17 -66.44 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.54 Total: 18.46 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 5.27 Total: -21.86 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -1.28 Total: -76.57 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.25 Total: -32.38 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.96 Total: 45.91 kcal Total: -71.61 5.17 -66.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915966192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.125 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds