Wall clock time and date at job start Tue Mar 31 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.53001 * 109.47011 * 240.00041 * 2 1 3 5 5 C 1.50697 * 109.47223 * 120.00369 * 2 1 3 6 6 O 1.21308 * 120.00231 * 359.97438 * 5 2 1 7 7 N 1.34780 * 119.99997 * 180.02562 * 5 2 1 8 8 N 1.40099 * 119.99810 * 179.97438 * 7 5 2 9 9 C 1.29836 * 119.99517 * 179.97438 * 8 7 5 10 10 C 1.47353 * 119.99695 * 180.02562 * 9 8 7 11 11 C 1.39819 * 120.08832 * 179.97438 * 10 9 8 12 12 C 1.37708 * 119.91100 * 180.02562 * 11 10 9 13 13 C 1.39080 * 120.09196 * 0.02562 * 12 11 10 14 14 O 1.35651 * 119.91220 * 179.97438 * 13 12 11 15 15 C 1.34806 * 117.00534 * 5.54991 * 14 13 12 16 16 H 1.08002 * 119.99584 * 354.94801 * 15 14 13 17 17 C 1.38632 * 120.00484 * 174.94495 * 15 14 13 18 18 N 1.31558 * 120.00195 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99887 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47286 * 90.00361 * 19 17 15 21 21 H 1.48506 * 109.47167 * 210.00289 * 19 17 15 22 22 H 1.48495 * 109.47114 * 330.00165 * 19 17 15 23 23 C 1.39078 * 120.17427 * 0.23285 * 13 12 11 24 24 C 1.37722 * 120.08653 * 359.48686 * 23 13 12 25 25 H 1.09010 * 109.47047 * 299.99776 * 1 2 3 26 26 H 1.08997 * 109.47750 * 59.99918 * 1 2 3 27 27 H 1.08997 * 109.47500 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47325 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47139 * 300.00221 * 3 2 1 30 30 H 1.08996 * 109.47154 * 60.00274 * 3 2 1 31 31 H 1.08999 * 109.47369 * 300.00001 * 4 2 1 32 32 H 1.09002 * 109.47022 * 59.99922 * 4 2 1 33 33 H 1.08996 * 109.47164 * 179.97438 * 4 2 1 34 34 H 0.97003 * 119.99709 * 359.97438 * 7 5 2 35 35 H 1.08001 * 120.00435 * 0.02562 * 9 8 7 36 36 H 1.07996 * 120.04038 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.95437 * 180.02562 * 12 11 10 38 38 H 0.97001 * 120.00246 * 179.97438 * 18 17 15 39 39 H 1.07998 * 119.95568 * 179.74621 * 23 13 12 40 40 H 1.07991 * 120.04358 * 180.25556 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2441 -1.1712 2.0291 7 7 3.3574 -0.8332 1.4439 8 7 3.8244 -1.4932 2.5880 9 6 5.1009 -1.6118 2.7934 10 6 5.5921 -2.3065 3.9965 11 6 6.9664 -2.4358 4.2193 12 6 7.4214 -3.0862 5.3446 13 6 6.5161 -3.6146 6.2586 14 8 6.9683 -4.2550 7.3656 15 6 8.2995 -4.2442 7.5782 16 1 8.9604 -3.8119 6.8414 17 6 8.8201 -4.7877 8.7424 18 7 10.1191 -4.7767 8.9500 19 14 7.6769 -5.5346 10.0170 20 1 7.4843 -6.9777 9.7242 21 1 8.2729 -5.3790 11.3683 22 1 6.3647 -4.8410 9.9720 23 6 5.1483 -3.4928 6.0380 24 6 4.6852 -2.8387 4.9179 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7209 -1.2495 34 1 3.9877 -0.4644 0.8054 35 1 5.8028 -1.2013 2.0825 36 1 7.6700 -2.0261 3.5098 37 1 8.4828 -3.1861 5.5176 38 1 10.4834 -5.1567 9.7647 39 1 4.4485 -3.9080 6.7480 40 1 3.6230 -2.7410 4.7494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915966839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:23 Heat of formation + Delta-G solvation = -8.908077 kcal Electronic energy + Delta-G solvation = -21595.523003 eV Core-core repulsion = 18183.866327 eV Total energy + Delta-G solvation = -3411.656676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20266 -39.27631 -37.31988 -36.09446 -35.70733 -32.65173 -32.08806 -30.42875 -28.80913 -27.80061 -27.43514 -25.62684 -23.88093 -22.35396 -21.97806 -20.30734 -19.52326 -18.11726 -17.52423 -16.97919 -16.78831 -15.42879 -15.11477 -15.06429 -14.71807 -14.26770 -14.05543 -13.95163 -13.82286 -13.75145 -12.79651 -12.77154 -12.75739 -12.46031 -12.40115 -12.31526 -12.27883 -12.11659 -11.41714 -11.41290 -11.31412 -11.31039 -10.89420 -10.81139 -10.28543 -10.08353 -9.78728 -9.49859 -9.24385 -8.81196 -8.38248 -7.24578 -6.54656 -4.19532 1.27892 2.10636 2.43952 2.49282 3.01750 3.18809 3.20649 3.34888 4.14542 4.16068 4.32908 4.45456 4.48431 4.71397 4.77443 4.83935 5.00488 5.09341 5.09534 5.19383 5.27077 5.39574 5.48967 5.49190 5.51809 5.63815 5.68969 5.79133 5.87375 5.96015 6.04659 6.23920 6.47067 6.70508 6.95466 7.04276 7.12915 7.14727 7.47912 7.60778 7.67555 7.90129 8.43955 8.79430 9.40150 10.51809 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044266 B = 0.002471 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.381597 B =11328.607416 C =11765.089593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.142 4.142 5 C 0.537 3.463 6 O -0.507 6.507 7 N -0.586 5.586 8 N -0.265 5.265 9 C 0.146 3.854 10 C -0.164 4.164 11 C -0.036 4.036 12 C -0.229 4.229 13 C 0.176 3.824 14 O -0.206 6.206 15 C -0.391 4.391 16 H 0.110 0.890 17 C 0.065 3.935 18 N -0.871 5.871 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.258 1.258 23 C -0.201 4.201 24 C -0.027 4.027 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.378 0.622 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.282 0.718 39 H 0.121 0.879 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 10.177 -18.736 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.200 4.200 4 C -0.200 4.200 5 C 0.323 3.677 6 O -0.379 6.379 7 N -0.327 5.327 8 N -0.070 5.070 9 C -0.062 4.062 10 C -0.168 4.168 11 C -0.057 4.057 12 C -0.249 4.249 13 C 0.121 3.879 14 O -0.109 6.109 15 C -0.466 4.466 16 H 0.128 0.872 17 C -0.139 4.139 18 N -0.507 5.507 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.181 1.181 23 C -0.220 4.220 24 C -0.048 4.048 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.215 0.785 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.860 9.532 -17.597 23.789 hybrid contribution 1.068 0.145 -0.254 1.107 sum -11.792 9.678 -17.851 23.481 Atomic orbital electron populations 1.21677 0.91438 1.03170 1.02278 1.20844 0.98380 0.96331 0.93039 1.21897 1.01126 0.93706 1.03236 1.21897 1.01124 1.00918 0.96024 1.20458 0.80445 0.79555 0.87273 1.90712 1.54570 1.46398 1.46233 1.46996 1.07786 1.56520 1.21398 1.75103 1.16197 1.12398 1.03323 1.24430 0.91020 0.94581 0.96143 1.17855 0.93131 1.09727 0.96079 1.20830 0.93325 0.95572 0.95957 1.21159 1.00897 1.06344 0.96470 1.19341 0.92574 0.89280 0.86666 1.83544 1.26664 1.63015 1.37635 1.20836 0.78047 1.40896 1.06808 0.87248 1.24512 0.95980 0.96238 0.97205 1.69639 1.10711 1.42916 1.27469 0.86167 0.81251 0.80004 0.79494 1.19694 1.20635 1.18146 1.20201 0.92707 1.08223 1.00874 1.20917 0.99123 0.93149 0.91569 0.91694 0.91756 0.91693 0.92258 0.91019 0.91751 0.91755 0.91020 0.92260 0.78478 0.87529 0.86617 0.84438 0.90781 0.86081 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 7.76 37.16 0.29 -0.77 16 2 C -0.08 -0.67 0.87 -155.66 -0.14 -0.81 16 3 C -0.14 -0.89 8.37 37.16 0.31 -0.58 16 4 C -0.14 -0.89 8.37 37.16 0.31 -0.58 16 5 C 0.54 6.97 6.60 -10.99 -0.07 6.90 16 6 O -0.51 -8.97 16.32 5.53 0.09 -8.88 16 7 N -0.59 -7.17 6.05 31.22 0.19 -6.98 16 8 N -0.26 -4.10 10.15 32.14 0.33 -3.77 16 9 C 0.15 2.02 10.74 -14.69 -0.16 1.86 16 10 C -0.16 -2.70 5.87 -105.01 -0.62 -3.32 16 11 C -0.04 -0.60 9.78 -39.18 -0.38 -0.98 16 12 C -0.23 -4.60 9.15 -39.46 -0.36 -4.96 16 13 C 0.18 3.90 6.65 -38.96 -0.26 3.65 16 14 O -0.21 -5.22 8.58 0.42 0.00 -5.22 16 15 C -0.39 -10.53 9.94 30.88 0.31 -10.22 16 16 H 0.11 2.97 5.42 -52.49 -0.28 2.69 16 17 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.87 -24.22 13.96 55.48 0.77 -23.44 16 19 Si 0.91 21.00 28.62 -169.99 -4.86 16.13 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.26 -6.02 7.11 56.52 0.40 -5.61 16 23 C -0.20 -3.96 9.97 -39.46 -0.39 -4.35 16 24 C -0.03 -0.49 9.57 -39.18 -0.37 -0.87 16 25 H 0.06 0.60 8.10 -51.92 -0.42 0.18 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 28 H 0.06 0.32 7.56 -51.93 -0.39 -0.08 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.32 7.57 -51.93 -0.39 -0.08 16 34 H 0.38 3.21 7.49 -182.60 -1.37 1.84 16 35 H 0.11 1.08 8.02 -52.49 -0.42 0.65 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.14 2.86 5.62 -52.48 -0.29 2.56 16 38 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.13 2.23 7.55 -52.49 -0.40 1.83 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -31.79 344.69 -6.40 -38.19 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.48 Total: 2.13 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.63 Total: -13.36 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 1.29 Total: -34.19 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.86 Total: 16.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.79 -6.40 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915966839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.284 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds