Wall clock time and date at job start Tue Mar 31 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.53001 * 109.47011 * 240.00041 * 2 1 3 5 5 C 1.50697 * 109.47223 * 120.00369 * 2 1 3 6 6 O 1.21308 * 120.00231 * 359.97438 * 5 2 1 7 7 N 1.34780 * 119.99997 * 180.02562 * 5 2 1 8 8 N 1.40099 * 119.99810 * 179.97438 * 7 5 2 9 9 C 1.29836 * 119.99517 * 179.97438 * 8 7 5 10 10 C 1.47353 * 119.99695 * 180.02562 * 9 8 7 11 11 C 1.39819 * 120.08832 * 179.97438 * 10 9 8 12 12 C 1.37708 * 119.91100 * 180.02562 * 11 10 9 13 13 C 1.39080 * 120.09196 * 0.02562 * 12 11 10 14 14 O 1.35651 * 119.91220 * 179.97438 * 13 12 11 15 15 C 1.34806 * 117.00534 * 5.54991 * 14 13 12 16 16 H 1.08002 * 119.99584 * 354.94801 * 15 14 13 17 17 C 1.38632 * 120.00484 * 174.94495 * 15 14 13 18 18 N 1.31558 * 120.00195 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99887 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47286 * 90.00361 * 19 17 15 21 21 H 1.48506 * 109.47167 * 210.00289 * 19 17 15 22 22 H 1.48495 * 109.47114 * 330.00165 * 19 17 15 23 23 C 1.39078 * 120.17427 * 0.23285 * 13 12 11 24 24 C 1.37722 * 120.08653 * 359.48686 * 23 13 12 25 25 H 1.09010 * 109.47047 * 299.99776 * 1 2 3 26 26 H 1.08997 * 109.47750 * 59.99918 * 1 2 3 27 27 H 1.08997 * 109.47500 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47325 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47139 * 300.00221 * 3 2 1 30 30 H 1.08996 * 109.47154 * 60.00274 * 3 2 1 31 31 H 1.08999 * 109.47369 * 300.00001 * 4 2 1 32 32 H 1.09002 * 109.47022 * 59.99922 * 4 2 1 33 33 H 1.08996 * 109.47164 * 179.97438 * 4 2 1 34 34 H 0.97003 * 119.99709 * 359.97438 * 7 5 2 35 35 H 1.08001 * 120.00435 * 0.02562 * 9 8 7 36 36 H 1.07996 * 120.04038 * 0.02562 * 11 10 9 37 37 H 1.08004 * 119.95437 * 180.02562 * 12 11 10 38 38 H 0.97001 * 120.00246 * 179.97438 * 18 17 15 39 39 H 1.07998 * 119.95568 * 179.74621 * 23 13 12 40 40 H 1.07991 * 120.04358 * 180.25556 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2441 -1.1712 2.0291 7 7 3.3574 -0.8332 1.4439 8 7 3.8244 -1.4932 2.5880 9 6 5.1009 -1.6118 2.7934 10 6 5.5921 -2.3065 3.9965 11 6 6.9664 -2.4358 4.2193 12 6 7.4214 -3.0862 5.3446 13 6 6.5161 -3.6146 6.2586 14 8 6.9683 -4.2550 7.3656 15 6 8.2995 -4.2442 7.5782 16 1 8.9604 -3.8119 6.8414 17 6 8.8201 -4.7877 8.7424 18 7 10.1191 -4.7767 8.9500 19 14 7.6769 -5.5346 10.0170 20 1 7.4843 -6.9777 9.7242 21 1 8.2729 -5.3790 11.3683 22 1 6.3647 -4.8410 9.9720 23 6 5.1483 -3.4928 6.0380 24 6 4.6852 -2.8387 4.9179 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7209 -1.2495 34 1 3.9877 -0.4644 0.8054 35 1 5.8028 -1.2013 2.0825 36 1 7.6700 -2.0261 3.5098 37 1 8.4828 -3.1861 5.5176 38 1 10.4834 -5.1567 9.7647 39 1 4.4485 -3.9080 6.7480 40 1 3.6230 -2.7410 4.7494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915966839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:22 Heat of formation + Delta-G solvation = -29.367037 kcal Electronic energy + Delta-G solvation = -21596.410170 eV Core-core repulsion = 18183.866327 eV Total energy + Delta-G solvation = -3412.543843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18598 -40.90585 -38.78425 -37.28220 -36.64045 -34.52029 -33.36792 -31.95626 -30.23316 -28.25834 -28.07561 -27.43460 -25.02191 -23.82288 -23.27284 -21.61804 -20.53028 -19.86193 -19.14820 -18.12157 -17.81829 -16.60946 -16.46161 -16.34695 -15.92328 -15.75862 -15.49462 -15.34201 -14.83449 -14.73737 -14.38856 -14.14069 -14.04532 -13.83135 -13.36215 -13.10098 -12.97730 -12.96911 -12.84316 -12.66518 -12.55237 -12.46465 -11.99855 -11.95922 -11.92170 -11.37365 -11.12313 -10.97618 -10.82927 -10.26191 -9.88285 -8.78518 -8.51880 -6.23164 -0.04939 0.57141 1.22544 1.32760 1.37563 1.51120 1.51949 1.88662 2.27028 2.79925 3.01027 3.17150 3.38425 3.74223 3.76793 3.87558 3.96851 4.12328 4.16826 4.30165 4.49615 4.60305 4.68517 4.69047 4.78155 4.78944 4.90745 4.91775 4.91957 4.97190 5.19117 5.21921 5.30601 5.31758 5.35857 5.52428 5.61815 5.76949 5.84423 6.13548 6.15677 6.55112 6.82220 7.44608 7.54475 8.58605 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044266 B = 0.002471 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.381597 B =11328.607416 C =11765.089593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.529 3.471 6 O -0.564 6.564 7 N -0.573 5.573 8 N -0.298 5.298 9 C 0.151 3.849 10 C -0.141 4.141 11 C -0.023 4.023 12 C -0.239 4.239 13 C 0.142 3.858 14 O -0.239 6.239 15 C -0.400 4.400 16 H 0.092 0.908 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.964 3.036 20 H -0.266 1.266 21 H -0.268 1.268 22 H -0.265 1.265 23 C -0.202 4.202 24 C -0.034 4.034 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.401 0.599 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.124 0.876 38 H 0.286 0.714 39 H 0.125 0.875 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.372 12.140 -22.274 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.197 4.197 5 C 0.318 3.682 6 O -0.439 6.439 7 N -0.317 5.317 8 N -0.103 5.103 9 C -0.057 4.057 10 C -0.145 4.145 11 C -0.043 4.043 12 C -0.258 4.258 13 C 0.091 3.909 14 O -0.145 6.145 15 C -0.476 4.476 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.787 3.213 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.189 1.189 23 C -0.221 4.221 24 C -0.054 4.054 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.242 0.758 35 H 0.175 0.825 36 H 0.181 0.819 37 H 0.142 0.858 38 H 0.095 0.905 39 H 0.143 0.857 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.859 11.526 -21.197 27.825 hybrid contribution 1.102 -0.237 0.428 1.206 sum -12.757 11.289 -20.768 26.861 Atomic orbital electron populations 1.21716 0.91765 1.02271 1.02942 1.20918 0.98099 0.97330 0.91427 1.21933 1.02042 0.91900 1.03881 1.21933 1.02043 1.00122 0.95652 1.21556 0.80078 0.78588 0.87962 1.90690 1.55950 1.48823 1.48449 1.46871 1.08194 1.55805 1.20791 1.74982 1.17643 1.12477 1.05225 1.24452 0.91595 0.94054 0.95641 1.18232 0.92962 1.07119 0.96141 1.21192 0.94158 0.93798 0.95125 1.21263 1.00078 1.06925 0.97541 1.19808 0.93851 0.90562 0.86710 1.83502 1.25392 1.65901 1.39671 1.20789 0.78916 1.41085 1.06765 0.89023 1.25220 0.97279 0.97004 0.98987 1.69709 1.11963 1.45325 1.28539 0.85302 0.79011 0.79198 0.77796 1.19131 1.19232 1.18927 1.20361 0.91923 1.08195 1.01642 1.21081 0.99821 0.93072 0.91440 0.93449 0.88617 0.93433 0.90835 0.88394 0.93156 0.93141 0.88398 0.90833 0.75814 0.82546 0.81875 0.85816 0.90463 0.85711 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 7.76 71.98 0.56 -1.35 16 2 C -0.07 -1.00 0.87 -52.93 -0.05 -1.05 16 3 C -0.14 -1.21 8.37 71.98 0.60 -0.61 16 4 C -0.14 -1.20 8.37 71.98 0.60 -0.60 16 5 C 0.53 12.76 6.60 87.66 0.58 13.34 16 6 O -0.56 -19.84 16.32 -3.12 -0.05 -19.89 16 7 N -0.57 -12.12 6.05 -173.51 -1.05 -13.17 16 8 N -0.30 -8.29 10.15 -52.22 -0.53 -8.82 16 9 C 0.15 3.50 10.74 87.39 0.94 4.43 16 10 C -0.14 -4.21 5.87 -20.11 -0.12 -4.33 16 11 C -0.02 -0.68 9.78 22.53 0.22 -0.46 16 12 C -0.24 -9.58 9.15 22.35 0.20 -9.37 16 13 C 0.14 6.44 6.65 22.67 0.15 6.59 16 14 O -0.24 -12.65 8.58 -21.40 -0.18 -12.83 16 15 C -0.40 -22.64 9.94 67.91 0.68 -21.97 16 16 H 0.09 5.31 5.42 -2.91 -0.02 5.29 16 17 C 0.01 0.82 5.49 84.83 0.47 1.29 16 18 N -0.92 -53.04 13.96 21.61 0.30 -52.74 16 19 Si 0.96 44.74 28.62 68.60 1.96 46.70 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 23 C -0.20 -8.02 9.97 22.35 0.22 -7.80 16 24 C -0.03 -1.18 9.57 22.53 0.22 -0.96 16 25 H 0.05 0.85 8.10 -2.38 -0.02 0.83 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 28 H 0.07 0.43 7.56 -2.39 -0.02 0.41 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.43 7.57 -2.39 -0.02 0.41 16 34 H 0.40 4.90 7.49 -213.32 -1.60 3.30 16 35 H 0.16 2.08 8.02 -2.91 -0.02 2.06 16 36 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.12 5.32 5.62 -2.91 -0.02 5.30 16 38 H 0.29 15.22 8.31 -92.71 -0.77 14.44 16 39 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 40 H 0.13 4.47 7.55 -2.92 -0.02 4.45 16 Total: -1.00 -74.58 344.69 5.18 -69.40 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -0.54 Total: 14.19 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 5.27 Total: -22.83 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.28 Total: -74.73 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.23 Total: -32.72 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.96 Total: 46.70 kcal Total: -74.58 5.18 -69.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915966839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.030 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds