Wall clock time and date at job start Tue Mar 31 2020 06:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47317 * 2 1 4 4 H 1.09006 * 109.46639 * 55.00125 * 3 2 1 5 5 C 1.52998 * 109.47068 * 295.00211 * 3 2 1 6 6 C 1.50693 * 109.47376 * 174.99974 * 3 2 1 7 7 O 1.21316 * 119.99894 * 359.97438 * 6 3 2 8 8 N 1.34775 * 120.00317 * 179.97438 * 6 3 2 9 9 N 1.40109 * 120.00094 * 179.97438 * 8 6 3 10 10 C 1.29828 * 119.99651 * 180.02562 * 9 8 6 11 11 C 1.47355 * 119.99803 * 180.02562 * 10 9 8 12 12 C 1.39818 * 120.08597 * 359.72014 * 11 10 9 13 13 C 1.37714 * 119.91163 * 179.76598 * 12 11 10 14 14 C 1.39087 * 120.08576 * 0.51346 * 13 12 11 15 15 O 1.35646 * 119.90970 * 179.71983 * 14 13 12 16 16 C 1.34810 * 116.99855 * 174.46715 * 15 14 13 17 17 H 1.08001 * 119.99883 * 5.06599 * 16 15 14 18 18 C 1.38646 * 120.00186 * 185.05355 * 16 15 14 19 19 N 1.31565 * 119.99653 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00199 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46899 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47111 * 119.99917 * 20 18 16 23 23 H 1.48496 * 109.47276 * 240.00482 * 20 18 16 24 24 C 1.39075 * 120.17473 * 359.73966 * 14 13 12 25 25 C 1.37724 * 120.08932 * 0.02562 * 24 14 13 26 26 H 1.08996 * 109.46937 * 59.99726 * 1 2 3 27 27 H 1.09001 * 109.47214 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46916 * 299.99698 * 1 2 3 29 29 H 1.08999 * 109.47176 * 239.99817 * 2 1 3 30 30 H 1.08996 * 109.46937 * 120.00274 * 2 1 3 31 31 H 1.09001 * 109.47028 * 179.97438 * 5 3 2 32 32 H 1.08996 * 109.47279 * 299.99467 * 5 3 2 33 33 H 1.09002 * 109.46996 * 60.00111 * 5 3 2 34 34 H 0.96996 * 120.00098 * 0.02562 * 8 6 3 35 35 H 1.07997 * 120.00379 * 0.02562 * 10 9 8 36 36 H 1.08004 * 120.04172 * 0.02614 * 12 11 10 37 37 H 1.07995 * 119.95895 * 180.26167 * 13 12 11 38 38 H 0.97001 * 119.99172 * 179.97438 * 19 18 16 39 39 H 1.07999 * 119.95482 * 179.97438 * 24 14 13 40 40 H 1.08001 * 120.04203 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1451 0.3948 0.2047 8 7 4.2150 2.6117 0.1448 9 7 5.6113 2.6134 0.2605 10 6 6.2595 3.7380 0.2811 11 6 7.7281 3.7398 0.4022 12 6 8.4247 2.5315 0.5008 13 6 9.7976 2.5372 0.6090 14 6 10.4903 3.7431 0.6310 15 8 11.8421 3.7446 0.7433 16 6 12.4631 4.9370 0.6435 17 1 11.8817 5.8436 0.5633 18 6 13.8482 4.9995 0.6439 19 7 14.5564 3.8950 0.7413 20 14 14.7087 6.6517 0.5062 21 1 13.6940 7.7318 0.4103 22 1 15.5530 6.8718 1.7078 23 1 15.5630 6.6653 -0.7083 24 6 9.8006 4.9472 0.5384 25 6 8.4280 4.9498 0.4251 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.9983 3.1543 -1.3071 32 1 2.0699 1.5875 -2.1491 33 1 0.5490 2.1252 -1.3968 34 1 3.7327 3.4508 0.0805 35 1 5.7225 4.6723 0.2096 36 1 7.8871 1.5948 0.4880 37 1 10.3367 1.6042 0.6810 38 1 15.5254 3.9387 0.7412 39 1 10.3420 5.8815 0.5562 40 1 7.8932 5.8853 0.3537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915973624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:34 Heat of formation + Delta-G solvation = -13.398282 kcal Electronic energy + Delta-G solvation = -21299.009590 eV Core-core repulsion = 17887.158204 eV Total energy + Delta-G solvation = -3411.851386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93190 -39.10445 -37.17644 -36.00127 -35.47069 -32.67271 -32.10394 -30.33275 -30.04224 -28.35003 -25.75923 -25.50480 -23.25214 -22.16762 -21.60103 -20.34176 -19.84741 -18.18025 -17.57904 -16.99682 -16.64106 -15.76334 -15.10359 -14.95705 -14.60146 -14.49019 -14.26506 -13.83108 -13.76178 -13.53998 -13.15823 -12.82963 -12.56782 -12.48479 -12.45761 -12.01742 -11.92238 -11.79124 -11.33024 -11.24659 -11.14995 -11.00749 -10.94346 -10.77374 -10.50508 -10.07057 -9.77247 -9.43583 -9.21672 -8.74150 -8.28997 -7.11504 -6.58594 -4.14979 1.37144 2.20842 2.50357 2.55830 3.01139 3.06969 3.13086 3.16687 3.86486 4.28562 4.39643 4.55127 4.57279 4.88387 4.92092 4.99192 5.01169 5.11999 5.14998 5.17944 5.21263 5.41845 5.50358 5.56868 5.60615 5.74274 5.76751 5.90275 5.95262 6.04859 6.14732 6.34676 6.62301 6.80547 6.96374 7.09005 7.20301 7.21698 7.32352 7.66473 7.70917 7.86638 8.49988 8.86258 9.54353 10.58408 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.054734 B = 0.002247 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.443706 B =12459.784423 C =12864.965106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.105 4.105 4 H 0.098 0.902 5 C -0.147 4.147 6 C 0.530 3.470 7 O -0.508 6.508 8 N -0.588 5.588 9 N -0.268 5.268 10 C 0.148 3.852 11 C -0.173 4.173 12 C -0.025 4.025 13 C -0.201 4.201 14 C 0.169 3.831 15 O -0.166 6.166 16 C -0.393 4.393 17 H 0.097 0.903 18 C 0.040 3.960 19 N -0.854 5.854 20 Si 0.945 3.055 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.242 4.242 25 C -0.035 4.035 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.377 0.623 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.272 0.728 39 H 0.132 0.868 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.487 1.654 -2.159 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.128 4.128 4 H 0.116 0.884 5 C -0.205 4.205 6 C 0.316 3.684 7 O -0.380 6.380 8 N -0.329 5.329 9 N -0.073 5.073 10 C -0.059 4.059 11 C -0.177 4.177 12 C -0.045 4.045 13 C -0.220 4.220 14 C 0.113 3.887 15 O -0.067 6.067 16 C -0.468 4.468 17 H 0.114 0.886 18 C -0.166 4.166 19 N -0.487 5.487 20 Si 0.769 3.231 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.261 4.261 25 C -0.055 4.055 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.214 0.786 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.718 -0.382 -2.032 22.812 hybrid contribution -0.033 2.317 -0.114 2.320 sum -22.751 1.936 -2.146 22.934 Atomic orbital electron populations 1.21842 0.95323 1.02034 1.01833 1.21361 0.95386 0.93833 1.03875 1.21365 0.90839 0.99901 1.00676 0.88370 1.21859 1.02509 1.00121 0.95978 1.20573 0.89168 0.82643 0.76003 1.90720 1.69977 1.30837 1.46488 1.47021 1.03379 1.08900 1.73606 1.75129 0.89519 1.25466 1.17233 1.24427 0.94741 0.93088 0.93668 1.17792 0.88457 0.94039 1.17437 1.20912 0.92723 0.97196 0.93715 1.20207 0.93533 0.96299 1.11997 1.19592 0.84838 0.93392 0.90904 1.83946 1.13574 1.33685 1.75468 1.21477 0.89739 0.83382 1.52244 0.88569 1.25380 0.95441 0.99543 0.96216 1.70056 1.07012 1.27189 1.44461 0.85590 0.79366 0.79757 0.78398 1.18939 1.20014 1.19998 1.21042 0.94042 0.98510 1.12535 1.20777 0.93567 0.95782 0.95398 0.92423 0.92328 0.92686 0.91073 0.90881 0.92328 0.91779 0.90903 0.78553 0.87708 0.85692 0.86088 0.91761 0.85057 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.54 16 2 C -0.11 -0.90 4.75 -26.73 -0.13 -1.03 16 3 C -0.10 -0.86 2.72 -91.78 -0.25 -1.11 16 4 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.15 -0.91 8.84 37.16 0.33 -0.59 16 6 C 0.53 6.96 7.27 -10.99 -0.08 6.88 16 7 O -0.51 -9.12 16.26 5.53 0.09 -9.03 16 8 N -0.59 -7.36 6.16 31.22 0.19 -7.16 16 9 N -0.27 -4.29 10.15 32.14 0.33 -3.97 16 10 C 0.15 2.14 10.74 -14.69 -0.16 1.98 16 11 C -0.17 -2.98 5.87 -105.01 -0.62 -3.60 16 12 C -0.03 -0.48 9.57 -39.18 -0.37 -0.86 16 13 C -0.20 -4.27 9.97 -39.46 -0.39 -4.66 16 14 C 0.17 3.96 6.65 -38.96 -0.26 3.70 16 15 O -0.17 -4.58 9.75 0.43 0.00 -4.57 16 16 C -0.39 -10.51 9.48 30.88 0.29 -10.21 16 17 H 0.10 2.35 5.19 -52.49 -0.27 2.07 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.85 -24.28 13.67 55.48 0.76 -23.52 16 20 Si 0.94 19.66 29.55 -169.99 -5.02 14.64 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.24 -4.92 9.15 -39.46 -0.36 -5.29 16 25 C -0.03 -0.58 9.78 -39.18 -0.38 -0.97 16 26 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 31 H 0.06 0.31 7.56 -51.93 -0.39 -0.09 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.33 6.56 -51.93 -0.34 -0.01 16 34 H 0.38 3.22 8.07 -182.59 -1.47 1.75 16 35 H 0.11 1.10 8.02 -52.49 -0.42 0.68 16 36 H 0.13 2.33 7.55 -52.48 -0.40 1.94 16 37 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 39 H 0.13 2.63 5.62 -52.49 -0.29 2.33 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -32.96 345.05 -7.01 -39.97 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.44 Total: 3.77 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.12 Total: -15.32 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 1.28 Total: -34.65 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.96 -7.01 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915973624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.568 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds