Wall clock time and date at job start Tue Mar 31 2020 06:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47317 * 2 1 4 4 H 1.09006 * 109.46639 * 55.00125 * 3 2 1 5 5 C 1.52998 * 109.47068 * 295.00211 * 3 2 1 6 6 C 1.50693 * 109.47376 * 174.99974 * 3 2 1 7 7 O 1.21316 * 119.99894 * 359.97438 * 6 3 2 8 8 N 1.34775 * 120.00317 * 179.97438 * 6 3 2 9 9 N 1.40109 * 120.00094 * 179.97438 * 8 6 3 10 10 C 1.29828 * 119.99651 * 180.02562 * 9 8 6 11 11 C 1.47355 * 119.99803 * 180.02562 * 10 9 8 12 12 C 1.39818 * 120.08597 * 359.72014 * 11 10 9 13 13 C 1.37714 * 119.91163 * 179.76598 * 12 11 10 14 14 C 1.39087 * 120.08576 * 0.51346 * 13 12 11 15 15 O 1.35646 * 119.90970 * 179.71983 * 14 13 12 16 16 C 1.34810 * 116.99855 * 174.46715 * 15 14 13 17 17 H 1.08001 * 119.99883 * 5.06599 * 16 15 14 18 18 C 1.38646 * 120.00186 * 185.05355 * 16 15 14 19 19 N 1.31565 * 119.99653 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00199 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46899 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47111 * 119.99917 * 20 18 16 23 23 H 1.48496 * 109.47276 * 240.00482 * 20 18 16 24 24 C 1.39075 * 120.17473 * 359.73966 * 14 13 12 25 25 C 1.37724 * 120.08932 * 0.02562 * 24 14 13 26 26 H 1.08996 * 109.46937 * 59.99726 * 1 2 3 27 27 H 1.09001 * 109.47214 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46916 * 299.99698 * 1 2 3 29 29 H 1.08999 * 109.47176 * 239.99817 * 2 1 3 30 30 H 1.08996 * 109.46937 * 120.00274 * 2 1 3 31 31 H 1.09001 * 109.47028 * 179.97438 * 5 3 2 32 32 H 1.08996 * 109.47279 * 299.99467 * 5 3 2 33 33 H 1.09002 * 109.46996 * 60.00111 * 5 3 2 34 34 H 0.96996 * 120.00098 * 0.02562 * 8 6 3 35 35 H 1.07997 * 120.00379 * 0.02562 * 10 9 8 36 36 H 1.08004 * 120.04172 * 0.02614 * 12 11 10 37 37 H 1.07995 * 119.95895 * 180.26167 * 13 12 11 38 38 H 0.97001 * 119.99172 * 179.97438 * 19 18 16 39 39 H 1.07999 * 119.95482 * 179.97438 * 24 14 13 40 40 H 1.08001 * 120.04203 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1451 0.3948 0.2047 8 7 4.2150 2.6117 0.1448 9 7 5.6113 2.6134 0.2605 10 6 6.2595 3.7380 0.2811 11 6 7.7281 3.7398 0.4022 12 6 8.4247 2.5315 0.5008 13 6 9.7976 2.5372 0.6090 14 6 10.4903 3.7431 0.6310 15 8 11.8421 3.7446 0.7433 16 6 12.4631 4.9370 0.6435 17 1 11.8817 5.8436 0.5633 18 6 13.8482 4.9995 0.6439 19 7 14.5564 3.8950 0.7413 20 14 14.7087 6.6517 0.5062 21 1 13.6940 7.7318 0.4103 22 1 15.5530 6.8718 1.7078 23 1 15.5630 6.6653 -0.7083 24 6 9.8006 4.9472 0.5384 25 6 8.4280 4.9498 0.4251 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.9983 3.1543 -1.3071 32 1 2.0699 1.5875 -2.1491 33 1 0.5490 2.1252 -1.3968 34 1 3.7327 3.4508 0.0805 35 1 5.7225 4.6723 0.2096 36 1 7.8871 1.5948 0.4880 37 1 10.3367 1.6042 0.6810 38 1 15.5254 3.9387 0.7412 39 1 10.3420 5.8815 0.5562 40 1 7.8932 5.8853 0.3537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915973624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:34 Heat of formation + Delta-G solvation = -35.346169 kcal Electronic energy + Delta-G solvation = -21299.961322 eV Core-core repulsion = 17887.158204 eV Total energy + Delta-G solvation = -3412.803118 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98681 -40.76652 -38.67804 -37.25005 -36.36218 -34.40320 -33.44621 -31.91696 -30.86912 -29.63772 -27.49689 -26.28012 -24.52921 -23.66910 -22.68865 -21.65019 -20.81506 -19.90691 -19.00036 -18.24066 -17.92273 -16.61730 -16.45996 -16.32068 -16.03110 -15.76113 -15.59687 -15.35681 -15.11184 -14.49986 -14.43484 -14.08196 -13.96901 -13.57505 -13.54317 -13.01719 -12.92894 -12.75841 -12.60643 -12.55476 -12.44577 -12.40790 -12.06406 -11.75214 -11.61194 -11.29630 -11.07768 -10.89764 -10.85330 -10.19701 -9.85203 -8.71733 -8.48981 -6.16299 0.00521 0.60955 1.26484 1.38194 1.47889 1.55363 1.57032 1.92199 2.17782 2.87719 3.19805 3.44385 3.48130 3.76361 3.80938 3.94802 4.01453 4.16460 4.28890 4.38075 4.50864 4.52447 4.58893 4.64516 4.71537 4.81552 4.93961 4.99454 5.00494 5.11440 5.16057 5.21768 5.26491 5.35531 5.49785 5.55375 5.65044 5.65590 6.00488 6.11253 6.18321 6.58825 6.95215 7.48763 7.73546 8.73887 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.054734 B = 0.002247 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.443706 B =12459.784423 C =12864.965106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.094 4.094 4 H 0.129 0.871 5 C -0.144 4.144 6 C 0.523 3.477 7 O -0.566 6.566 8 N -0.575 5.575 9 N -0.304 5.304 10 C 0.154 3.846 11 C -0.151 4.151 12 C -0.032 4.032 13 C -0.215 4.215 14 C 0.134 3.866 15 O -0.225 6.225 16 C -0.413 4.413 17 H 0.113 0.887 18 C -0.025 4.025 19 N -0.919 5.919 20 Si 1.023 2.977 21 H -0.244 1.244 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.245 4.245 25 C -0.018 4.018 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.403 0.597 35 H 0.160 0.840 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.273 0.727 39 H 0.135 0.865 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.062 4.968 -2.655 28.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.116 4.116 4 H 0.146 0.854 5 C -0.202 4.202 6 C 0.312 3.688 7 O -0.442 6.442 8 N -0.318 5.318 9 N -0.110 5.110 10 C -0.054 4.054 11 C -0.154 4.154 12 C -0.052 4.052 13 C -0.235 4.235 14 C 0.082 3.918 15 O -0.130 6.130 16 C -0.489 4.489 17 H 0.130 0.870 18 C -0.222 4.222 19 N -0.557 5.557 20 Si 0.842 3.158 21 H -0.167 1.167 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.264 4.264 25 C -0.038 4.038 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.244 0.756 35 H 0.177 0.823 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -27.387 2.962 -2.535 27.663 hybrid contribution 0.860 1.118 0.017 1.411 sum -26.527 4.081 -2.518 26.956 Atomic orbital electron populations 1.21805 0.92845 1.02563 1.03150 1.21364 0.97428 0.93917 1.01980 1.21440 0.86816 1.00215 1.03124 0.85353 1.21892 1.04075 1.00397 0.93809 1.21676 0.91083 0.81829 0.74209 1.90703 1.71487 1.32936 1.49055 1.46877 1.01980 1.10128 1.72817 1.75005 0.92084 1.27552 1.16329 1.24452 0.92942 0.94955 0.93095 1.18215 0.90588 0.93224 1.13411 1.21024 0.91707 0.98617 0.93852 1.20310 0.94657 0.95695 1.12804 1.20073 0.84180 0.95265 0.92330 1.83928 1.15552 1.34485 1.79035 1.22010 0.90475 0.83913 1.52510 0.87004 1.26705 0.96018 1.03846 0.95681 1.70211 1.07247 1.30098 1.48102 0.84468 0.78193 0.74845 0.78333 1.16694 1.19596 1.19621 1.21244 0.95720 0.97311 1.12132 1.21227 0.92031 0.97831 0.92726 0.90908 0.92364 0.91432 0.92911 0.93083 0.90652 0.93356 0.88439 0.75641 0.82291 0.85638 0.87282 0.91763 0.84786 0.81347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 71.98 0.70 -0.61 16 2 C -0.11 -1.69 4.75 30.59 0.15 -1.55 16 3 C -0.09 -1.25 2.72 -11.54 -0.03 -1.28 16 4 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 5 C -0.14 -1.21 8.84 71.98 0.64 -0.58 16 6 C 0.52 12.72 7.27 87.66 0.64 13.36 16 7 O -0.57 -20.35 16.26 -3.14 -0.05 -20.40 16 8 N -0.57 -12.32 6.16 -173.51 -1.07 -13.39 16 9 N -0.30 -8.81 10.15 -52.23 -0.53 -9.34 16 10 C 0.15 3.68 10.74 87.39 0.94 4.62 16 11 C -0.15 -4.71 5.87 -20.12 -0.12 -4.83 16 12 C -0.03 -1.21 9.57 22.53 0.22 -0.99 16 13 C -0.22 -9.60 9.97 22.35 0.22 -9.37 16 14 C 0.13 6.54 6.65 22.67 0.15 6.69 16 15 O -0.23 -13.29 9.75 -21.38 -0.21 -13.50 16 16 C -0.41 -23.15 9.48 67.92 0.64 -22.51 16 17 H 0.11 5.56 5.19 -2.91 -0.02 5.55 16 18 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 19 N -0.92 -55.74 13.67 21.61 0.30 -55.45 16 20 Si 1.02 41.25 29.55 68.60 2.03 43.28 16 21 H -0.24 -8.82 7.11 99.48 0.71 -8.11 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 23 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 24 C -0.24 -9.74 9.15 22.35 0.20 -9.53 16 25 C -0.02 -0.54 9.78 22.53 0.22 -0.32 16 26 H 0.07 0.44 6.56 -2.39 -0.02 0.43 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 1.00 7.95 -2.39 -0.02 0.99 16 31 H 0.07 0.40 7.56 -2.39 -0.02 0.38 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.40 6.56 -2.39 -0.02 0.38 16 34 H 0.40 4.74 8.07 -213.32 -1.72 3.02 16 35 H 0.16 2.12 8.02 -2.91 -0.02 2.09 16 36 H 0.13 4.73 7.55 -2.91 -0.02 4.71 16 37 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.13 5.22 5.62 -2.91 -0.02 5.20 16 40 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -80.57 345.05 4.83 -75.74 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.66 Total: 20.85 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 5.03 Total: -27.79 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -1.30 Total: -78.17 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.26 Total: -33.90 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -80.57 4.83 -75.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915973624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.389 kcal (2) G-P(sol) polarization free energy of solvation -80.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds