Wall clock time and date at job start Tue Mar 31 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46827 * 2 1 4 4 H 1.09000 * 109.47327 * 55.00296 * 3 2 1 5 5 C 1.53004 * 109.47342 * 294.99763 * 3 2 1 6 6 C 1.50707 * 109.46816 * 175.00084 * 3 2 1 7 7 O 1.21308 * 119.99886 * 359.97438 * 6 3 2 8 8 N 1.34775 * 119.99628 * 179.97438 * 6 3 2 9 9 N 1.40106 * 119.99798 * 179.97438 * 8 6 3 10 10 C 1.29748 * 119.99972 * 179.97438 * 9 8 6 11 11 C 1.47496 * 119.99812 * 180.02562 * 10 9 8 12 12 C 1.39753 * 120.12475 * 359.72748 * 11 10 9 13 13 C 1.37980 * 119.98120 * 179.76991 * 12 11 10 14 14 C 1.38249 * 120.22720 * 0.50505 * 13 12 11 15 15 C 1.38973 * 120.24983 * 359.74551 * 14 13 12 16 16 O 1.35761 * 119.99220 * 179.97438 * 15 14 13 17 17 C 1.34832 * 117.00117 * 174.48836 * 16 15 14 18 18 H 1.08000 * 119.99913 * 5.04390 * 17 16 15 19 19 C 1.38656 * 119.99981 * 185.05824 * 17 16 15 20 20 N 1.31557 * 119.99997 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99874 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47402 * 59.99468 * 21 19 17 23 23 H 1.48499 * 109.47074 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47048 * 299.99673 * 21 19 17 25 25 C 1.38612 * 120.01686 * 359.97438 * 15 14 13 26 26 H 1.09006 * 109.47100 * 60.00202 * 1 2 3 27 27 H 1.09000 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47661 * 299.99841 * 1 2 3 29 29 H 1.09000 * 109.46978 * 240.00471 * 2 1 3 30 30 H 1.08996 * 109.47135 * 119.99827 * 2 1 3 31 31 H 1.08998 * 109.46698 * 60.00408 * 5 3 2 32 32 H 1.08995 * 109.46906 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46850 * 300.00516 * 5 3 2 34 34 H 0.96996 * 120.00217 * 0.02562 * 8 6 3 35 35 H 1.07996 * 119.99857 * 0.02562 * 10 9 8 36 36 H 1.08003 * 120.00673 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.88293 * 180.25691 * 13 12 11 38 38 H 1.08006 * 119.87371 * 179.76917 * 14 13 12 39 39 H 0.96997 * 119.99660 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.11202 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1450 0.3949 0.2046 8 7 4.2148 2.6119 0.1448 9 7 5.6111 2.6136 0.2604 10 6 6.2591 3.7375 0.2801 11 6 7.7290 3.7393 0.4012 12 6 8.4260 2.5321 0.5008 13 6 9.8016 2.5370 0.6092 14 6 10.4938 3.7336 0.6304 15 6 9.8098 4.9398 0.5373 16 8 10.4948 6.1117 0.5591 17 6 9.7855 7.2393 0.3504 18 1 8.7106 7.1916 0.2574 19 6 10.4362 8.4599 0.2549 20 7 11.7456 8.5180 0.3685 21 14 9.4536 10.0219 -0.0349 22 1 8.4905 10.2148 1.0789 23 1 10.3770 11.1832 -0.0970 24 1 8.7120 9.9095 -1.3166 25 6 8.4285 4.9466 0.4221 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5489 2.1253 -1.3969 32 1 1.9981 3.1544 -1.3071 33 1 2.0698 1.5875 -2.1491 34 1 3.7325 3.4509 0.0805 35 1 5.7220 4.6717 0.2077 36 1 7.8884 1.5955 0.4895 37 1 10.3390 1.6030 0.6819 38 1 11.5702 3.7309 0.7192 39 1 12.2007 9.3720 0.3020 40 1 7.8955 5.8831 0.3492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915974743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:38 Heat of formation + Delta-G solvation = -11.425233 kcal Electronic energy + Delta-G solvation = -21519.995395 eV Core-core repulsion = 18108.229567 eV Total energy + Delta-G solvation = -3411.765828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02284 -39.07885 -37.12861 -36.05855 -35.54660 -32.78235 -32.19792 -30.43225 -29.43914 -28.61870 -25.76874 -25.36060 -23.75889 -21.98335 -21.60675 -20.36260 -19.90503 -18.20322 -17.47318 -16.81268 -16.64683 -15.80135 -15.16220 -15.07085 -14.61253 -14.54519 -14.26298 -13.90011 -13.74116 -13.65858 -13.19017 -12.84666 -12.59868 -12.50629 -12.44337 -12.03736 -11.94969 -11.72901 -11.32345 -11.20771 -11.03493 -10.91491 -10.90963 -10.83795 -10.51651 -10.16444 -9.89580 -9.46593 -9.33814 -8.84402 -7.90271 -7.28222 -6.48029 -4.08214 1.18983 2.27709 2.42752 2.45295 3.00998 3.09456 3.12516 3.13785 3.92611 4.22977 4.36533 4.53057 4.56960 4.78543 4.88798 4.99072 5.04689 5.08268 5.11739 5.16856 5.24907 5.40137 5.48235 5.58911 5.67544 5.73337 5.75373 5.87944 5.91822 6.01701 6.12754 6.28502 6.59271 6.73404 6.99672 7.03957 7.14912 7.22626 7.33614 7.55218 7.69977 7.95035 8.36559 8.96978 9.66169 10.69824 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021358 B = 0.002827 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.644769 B = 9900.459615 C =11117.598098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.105 4.105 4 H 0.100 0.900 5 C -0.148 4.148 6 C 0.532 3.468 7 O -0.507 6.507 8 N -0.588 5.588 9 N -0.244 5.244 10 C 0.133 3.867 11 C -0.025 4.025 12 C -0.163 4.163 13 C -0.086 4.086 14 C -0.169 4.169 15 C 0.146 3.854 16 O -0.177 6.177 17 C -0.394 4.394 18 H 0.091 0.909 19 C 0.040 3.960 20 N -0.862 5.862 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.200 4.200 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.381 0.619 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.271 0.729 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.619 -8.908 -1.498 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.128 4.128 4 H 0.118 0.882 5 C -0.206 4.206 6 C 0.318 3.682 7 O -0.378 6.378 8 N -0.330 5.330 9 N -0.047 5.047 10 C -0.078 4.078 11 C -0.028 4.028 12 C -0.184 4.184 13 C -0.104 4.104 14 C -0.190 4.190 15 C 0.093 3.907 16 O -0.081 6.081 17 C -0.471 4.471 18 H 0.108 0.892 19 C -0.164 4.164 20 N -0.496 5.496 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.222 4.222 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.219 0.781 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.081 0.919 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.892 -10.456 -1.390 21.637 hybrid contribution -1.007 2.280 -0.205 2.500 sum -19.899 -8.177 -1.594 21.572 Atomic orbital electron populations 1.21844 0.95256 1.02063 1.01902 1.21363 0.95463 0.93750 1.03851 1.21382 0.90558 1.00004 1.00838 0.88217 1.21868 1.02626 1.00191 0.95869 1.20642 0.89274 0.82526 0.75732 1.90717 1.70002 1.30819 1.46281 1.47091 1.03124 1.09270 1.73468 1.75052 0.89965 1.25767 1.13953 1.24652 0.94975 0.93555 0.94577 1.17988 0.88140 0.93859 1.02765 1.20890 0.93967 0.96887 1.06668 1.20654 0.93835 0.96706 0.99214 1.20428 0.99855 0.90137 1.08549 1.19172 0.90194 0.87810 0.93527 1.84014 1.35473 1.10957 1.77609 1.21228 0.91673 0.82544 1.51617 0.89192 1.25273 0.96004 0.98565 0.96596 1.70023 1.07357 1.26638 1.45621 0.85802 0.78821 0.79765 0.79153 1.19534 1.20276 1.19523 1.21191 0.94220 0.97126 1.09670 0.92380 0.92305 0.92644 0.91064 0.90882 0.90803 0.92229 0.91749 0.78107 0.86828 0.86196 0.86490 0.86192 0.91934 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.16 0.36 -0.53 16 2 C -0.11 -0.88 4.75 -26.73 -0.13 -1.00 16 3 C -0.11 -0.85 2.73 -91.77 -0.25 -1.10 16 4 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.15 -0.93 8.84 37.16 0.33 -0.60 16 6 C 0.53 6.87 7.27 -10.98 -0.08 6.79 16 7 O -0.51 -8.84 16.26 5.53 0.09 -8.75 16 8 N -0.59 -7.38 6.16 31.22 0.19 -7.19 16 9 N -0.24 -3.92 10.15 32.16 0.33 -3.59 16 10 C 0.13 2.03 10.75 -14.66 -0.16 1.87 16 11 C -0.02 -0.45 5.87 -105.07 -0.62 -1.07 16 12 C -0.16 -2.97 9.58 -39.11 -0.37 -3.35 16 13 C -0.09 -1.53 10.02 -39.67 -0.40 -1.93 16 14 C -0.17 -3.46 9.98 -39.31 -0.39 -3.85 16 15 C 0.15 3.39 6.64 -39.17 -0.26 3.13 16 16 O -0.18 -4.86 9.76 0.01 0.00 -4.86 16 17 C -0.39 -10.57 9.48 30.89 0.29 -10.27 16 18 H 0.09 2.18 5.20 -52.49 -0.27 1.91 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -24.66 13.67 55.48 0.76 -23.91 16 21 Si 0.94 19.75 29.55 -169.99 -5.02 14.73 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.20 -4.09 8.91 -38.96 -0.35 -4.44 16 26 H 0.06 0.29 6.57 -51.93 -0.34 -0.05 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.70 7.95 -51.93 -0.41 0.28 16 31 H 0.07 0.34 6.56 -51.93 -0.34 0.00 16 32 H 0.06 0.33 7.56 -51.93 -0.39 -0.07 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.38 3.36 8.07 -182.60 -1.47 1.89 16 35 H 0.11 1.37 8.02 -52.49 -0.42 0.95 16 36 H 0.12 2.14 7.55 -52.48 -0.40 1.74 16 37 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.12 2.34 8.06 -52.48 -0.42 1.91 16 39 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.13 2.60 5.63 -52.49 -0.30 2.30 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -33.03 345.10 -7.01 -40.05 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.44 Total: 3.71 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.12 Total: -15.39 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 1.28 Total: -34.69 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.03 -7.01 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915974743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.623 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds