Wall clock time and date at job start Tue Mar 31 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46827 * 2 1 4 4 H 1.09000 * 109.47327 * 55.00296 * 3 2 1 5 5 C 1.53004 * 109.47342 * 294.99763 * 3 2 1 6 6 C 1.50707 * 109.46816 * 175.00084 * 3 2 1 7 7 O 1.21308 * 119.99886 * 359.97438 * 6 3 2 8 8 N 1.34775 * 119.99628 * 179.97438 * 6 3 2 9 9 N 1.40106 * 119.99798 * 179.97438 * 8 6 3 10 10 C 1.29748 * 119.99972 * 179.97438 * 9 8 6 11 11 C 1.47496 * 119.99812 * 180.02562 * 10 9 8 12 12 C 1.39753 * 120.12475 * 359.72748 * 11 10 9 13 13 C 1.37980 * 119.98120 * 179.76991 * 12 11 10 14 14 C 1.38249 * 120.22720 * 0.50505 * 13 12 11 15 15 C 1.38973 * 120.24983 * 359.74551 * 14 13 12 16 16 O 1.35761 * 119.99220 * 179.97438 * 15 14 13 17 17 C 1.34832 * 117.00117 * 174.48836 * 16 15 14 18 18 H 1.08000 * 119.99913 * 5.04390 * 17 16 15 19 19 C 1.38656 * 119.99981 * 185.05824 * 17 16 15 20 20 N 1.31557 * 119.99997 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99874 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47402 * 59.99468 * 21 19 17 23 23 H 1.48499 * 109.47074 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47048 * 299.99673 * 21 19 17 25 25 C 1.38612 * 120.01686 * 359.97438 * 15 14 13 26 26 H 1.09006 * 109.47100 * 60.00202 * 1 2 3 27 27 H 1.09000 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47661 * 299.99841 * 1 2 3 29 29 H 1.09000 * 109.46978 * 240.00471 * 2 1 3 30 30 H 1.08996 * 109.47135 * 119.99827 * 2 1 3 31 31 H 1.08998 * 109.46698 * 60.00408 * 5 3 2 32 32 H 1.08995 * 109.46906 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46850 * 300.00516 * 5 3 2 34 34 H 0.96996 * 120.00217 * 0.02562 * 8 6 3 35 35 H 1.07996 * 119.99857 * 0.02562 * 10 9 8 36 36 H 1.08003 * 120.00673 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.88293 * 180.25691 * 13 12 11 38 38 H 1.08006 * 119.87371 * 179.76917 * 14 13 12 39 39 H 0.96997 * 119.99660 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.11202 * 180.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1450 0.3949 0.2046 8 7 4.2148 2.6119 0.1448 9 7 5.6111 2.6136 0.2604 10 6 6.2591 3.7375 0.2801 11 6 7.7290 3.7393 0.4012 12 6 8.4260 2.5321 0.5008 13 6 9.8016 2.5370 0.6092 14 6 10.4938 3.7336 0.6304 15 6 9.8098 4.9398 0.5373 16 8 10.4948 6.1117 0.5591 17 6 9.7855 7.2393 0.3504 18 1 8.7106 7.1916 0.2574 19 6 10.4362 8.4599 0.2549 20 7 11.7456 8.5180 0.3685 21 14 9.4536 10.0219 -0.0349 22 1 8.4905 10.2148 1.0789 23 1 10.3770 11.1832 -0.0970 24 1 8.7120 9.9095 -1.3166 25 6 8.4285 4.9466 0.4221 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5489 2.1253 -1.3969 32 1 1.9981 3.1544 -1.3071 33 1 2.0698 1.5875 -2.1491 34 1 3.7325 3.4509 0.0805 35 1 5.7220 4.6717 0.2077 36 1 7.8884 1.5955 0.4895 37 1 10.3390 1.6030 0.6819 38 1 11.5702 3.7309 0.7192 39 1 12.2007 9.3720 0.3020 40 1 7.8955 5.8831 0.3492 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915974743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:37 Heat of formation + Delta-G solvation = -32.721012 kcal Electronic energy + Delta-G solvation = -21520.918849 eV Core-core repulsion = 18108.229567 eV Total energy + Delta-G solvation = -3412.689283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05968 -40.73673 -38.61334 -37.37573 -36.39527 -34.35203 -33.77366 -31.57264 -30.61924 -29.95274 -27.33370 -26.36641 -24.99909 -23.31884 -22.83241 -21.66086 -20.86925 -19.88122 -18.83391 -18.03798 -17.99781 -16.74904 -16.63685 -16.30035 -16.06501 -15.78896 -15.54675 -15.40471 -15.25571 -14.48946 -14.35959 -14.15873 -14.02029 -13.58799 -13.50960 -13.02855 -12.90635 -12.61484 -12.57084 -12.50475 -12.44152 -12.39060 -12.12553 -11.76838 -11.62003 -11.40063 -11.24526 -10.91338 -10.82528 -10.52007 -9.35634 -8.95561 -8.42289 -6.10955 -0.19478 0.69963 1.21079 1.39627 1.42024 1.50327 1.55678 1.83371 2.21436 2.89536 3.21193 3.38351 3.51699 3.64398 3.77253 3.92769 3.97195 4.25298 4.32235 4.35272 4.37699 4.49683 4.57931 4.60677 4.69751 4.78596 4.92112 4.98733 5.05298 5.10322 5.12821 5.19441 5.21035 5.34176 5.49141 5.60546 5.65338 5.65505 6.04210 6.07625 6.12406 6.44865 7.02144 7.34512 7.81501 8.80493 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021358 B = 0.002827 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.644769 B = 9900.459615 C =11117.598098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.094 4.094 4 H 0.128 0.872 5 C -0.146 4.146 6 C 0.526 3.474 7 O -0.559 6.559 8 N -0.576 5.576 9 N -0.270 5.270 10 C 0.132 3.868 11 C -0.021 4.021 12 C -0.158 4.158 13 C -0.075 4.075 14 C -0.182 4.182 15 C 0.112 3.888 16 O -0.228 6.228 17 C -0.413 4.413 18 H 0.108 0.892 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.017 2.983 22 H -0.255 1.255 23 H -0.277 1.277 24 H -0.256 1.256 25 C -0.200 4.200 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.404 0.596 35 H 0.150 0.850 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.120 0.880 39 H 0.271 0.729 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.412 -8.878 -1.841 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.117 4.117 4 H 0.146 0.854 5 C -0.203 4.203 6 C 0.315 3.685 7 O -0.434 6.434 8 N -0.320 5.320 9 N -0.074 5.074 10 C -0.078 4.078 11 C -0.024 4.024 12 C -0.179 4.179 13 C -0.092 4.092 14 C -0.202 4.202 15 C 0.062 3.938 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.125 0.875 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.179 1.179 23 H -0.202 1.202 24 H -0.180 1.180 25 C -0.222 4.222 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.245 0.755 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.138 0.862 39 H 0.080 0.920 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.733 -10.454 -1.734 25.081 hybrid contribution 0.034 1.910 -0.085 1.912 sum -22.699 -8.544 -1.819 24.321 Atomic orbital electron populations 1.21810 0.92923 1.02622 1.03097 1.21363 0.97373 0.93650 1.02168 1.21467 0.86647 1.00462 1.03083 0.85378 1.21902 1.04150 1.00328 0.93935 1.21709 0.91091 0.81655 0.74002 1.90696 1.71394 1.32671 1.48653 1.47021 1.01758 1.10518 1.72735 1.74904 0.92389 1.26885 1.13220 1.24529 0.93448 0.94944 0.94891 1.18197 0.90132 0.92900 1.01153 1.21181 0.94226 0.97355 1.05101 1.21002 0.93928 0.97078 0.97235 1.20650 1.00248 0.90348 1.08958 1.19693 0.91681 0.87505 0.94960 1.83986 1.37100 1.12223 1.80190 1.21816 0.92690 0.82940 1.51429 0.87464 1.26587 0.97147 1.02256 0.96133 1.70185 1.09609 1.27558 1.48597 0.84660 0.77291 0.74499 0.79882 1.17919 1.20233 1.17984 1.21240 0.93261 0.98268 1.09400 0.91005 0.92213 0.91519 0.92686 0.92836 0.88396 0.90935 0.93133 0.75515 0.83345 0.85302 0.82954 0.86156 0.91962 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 71.98 0.70 -0.60 16 2 C -0.11 -1.61 4.75 30.59 0.15 -1.47 16 3 C -0.09 -1.27 2.73 -11.54 -0.03 -1.30 16 4 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.15 -1.33 8.84 71.98 0.64 -0.69 16 6 C 0.53 12.67 7.27 87.66 0.64 13.31 16 7 O -0.56 -19.32 16.26 -3.12 -0.05 -19.37 16 8 N -0.58 -12.94 6.16 -173.51 -1.07 -14.00 16 9 N -0.27 -8.06 10.15 -52.16 -0.53 -8.59 16 10 C 0.13 3.69 10.75 87.44 0.94 4.63 16 11 C -0.02 -0.75 5.87 -20.16 -0.12 -0.86 16 12 C -0.16 -5.48 9.58 22.58 0.22 -5.26 16 13 C -0.07 -2.56 10.02 22.21 0.22 -2.34 16 14 C -0.18 -7.52 9.98 22.45 0.22 -7.29 16 15 C 0.11 5.32 6.64 22.54 0.15 5.47 16 16 O -0.23 -13.15 9.76 -22.88 -0.22 -13.37 16 17 C -0.41 -22.75 9.48 67.92 0.64 -22.11 16 18 H 0.11 5.24 5.20 -2.91 -0.02 5.22 16 19 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 20 N -0.92 -55.14 13.67 21.61 0.30 -54.85 16 21 Si 1.02 40.69 29.55 68.60 2.03 42.72 16 22 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 23 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 25 C -0.20 -8.11 8.91 22.67 0.20 -7.91 16 26 H 0.07 0.45 6.57 -2.38 -0.02 0.43 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 1.00 7.95 -2.39 -0.02 0.98 16 31 H 0.10 0.47 6.56 -2.39 -0.02 0.45 16 32 H 0.07 0.49 7.56 -2.39 -0.02 0.47 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.40 5.59 8.07 -213.32 -1.72 3.87 16 35 H 0.15 3.03 8.02 -2.91 -0.02 3.00 16 36 H 0.13 4.32 7.55 -2.91 -0.02 4.30 16 37 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 39 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.14 5.30 5.63 -2.91 -0.02 5.29 16 Total: -1.00 -76.57 345.10 4.82 -71.75 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.66 Total: 22.97 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 5.03 Total: -27.25 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.30 Total: -77.45 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.27 Total: -32.74 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -76.57 4.82 -71.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915974743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.028 kcal (2) G-P(sol) polarization free energy of solvation -76.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds