Wall clock time and date at job start Tue Mar 31 2020 06:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21583 * 120.00198 * 359.97438 * 14 13 3 16 16 C 1.47526 * 119.99832 * 179.97438 * 14 13 3 17 17 C 1.39989 * 120.59540 * 359.97438 * 16 14 13 18 18 C 1.38339 * 118.34638 * 180.02562 * 17 16 14 19 19 C 1.38355 * 119.45952 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.40442 * 179.97438 * 19 18 17 21 21 C 1.52992 * 117.50121 * 343.74427 * 20 19 18 22 22 C 1.53000 * 117.49948 * 275.08169 * 20 19 18 23 23 N 1.31885 * 121.18421 * 359.97438 * 19 18 17 24 24 C 1.32233 * 121.80074 * 359.74404 * 23 19 18 25 25 O 1.35421 * 119.80247 * 180.29576 * 24 23 19 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 33 33 H 1.08000 * 120.82687 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.26919 * 179.97438 * 18 17 16 35 35 H 1.09000 * 115.54683 * 129.41904 * 20 19 18 36 36 H 1.08999 * 117.50195 * 0.02562 * 21 20 19 37 37 H 1.09006 * 117.49946 * 145.02341 * 21 20 19 38 38 H 1.08992 * 117.50280 * 214.97981 * 22 20 19 39 39 H 1.09000 * 117.50143 * 359.97438 * 22 20 19 40 40 H 0.96705 * 113.99790 * 270.25124 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3415 2.6319 -0.4322 16 6 0.0450 3.3243 -2.6275 17 6 0.9296 3.3694 -3.7115 18 6 0.5160 4.0006 -4.8710 19 6 -0.7465 4.5639 -4.9258 20 6 -1.1956 5.2517 -6.1892 21 6 -0.1194 5.6287 -7.2092 22 6 -0.7988 6.7176 -6.3749 23 7 -1.5639 4.5098 -3.8922 24 6 -1.2206 3.9140 -2.7627 25 8 -2.0942 3.8771 -1.7287 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0610 2.9499 32 1 2.2720 2.1231 -1.9978 33 1 1.9109 2.9233 -3.6441 34 1 1.1736 4.0539 -5.7261 35 1 -2.1668 4.9405 -6.5741 36 1 0.9135 5.3790 -6.9666 37 1 -0.3826 5.5661 -8.2651 38 1 -1.5086 7.3708 -6.8823 39 1 -0.2133 7.1847 -5.5831 40 1 -2.0240 4.6312 -1.1274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:31 Heat of formation + Delta-G solvation = -40.773026 kcal Electronic energy + Delta-G solvation = -22919.250898 eV Core-core repulsion = 19506.212454 eV Total energy + Delta-G solvation = -3413.038444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.96857 -40.30066 -38.75548 -37.20940 -36.84986 -34.54580 -33.77523 -32.55257 -31.15841 -28.95273 -26.41974 -25.04374 -24.44670 -23.07862 -22.71555 -21.91274 -21.11972 -19.70774 -19.17058 -18.10635 -17.81846 -17.17186 -17.02871 -16.32077 -16.20185 -15.91860 -15.66396 -15.30914 -14.63118 -14.49494 -14.22155 -13.96995 -13.62248 -13.46348 -13.17803 -12.98163 -12.88280 -12.75363 -12.68891 -12.26549 -12.16979 -12.07254 -11.63194 -11.55951 -11.34464 -11.08448 -10.97785 -10.93131 -10.54193 -10.38054 -9.87854 -9.59375 -8.15396 -6.33086 -0.47880 0.05129 1.46530 1.46605 1.57289 1.89972 2.26737 2.41317 2.54887 2.66918 3.05609 3.14413 3.34858 3.70626 3.76759 3.93824 3.97383 4.11345 4.19454 4.39727 4.47717 4.54474 4.55294 4.74028 4.79871 4.85177 4.90597 5.05767 5.09668 5.21404 5.24866 5.29476 5.41297 5.42433 5.53957 5.60556 5.78200 5.90945 6.15786 6.52225 6.73907 6.79571 6.94275 7.32891 7.52359 8.90064 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.003881 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.826972 B = 7212.451121 C = 8085.748435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.698 5.698 14 C 0.545 3.455 15 O -0.565 6.565 16 C -0.220 4.220 17 C -0.021 4.021 18 C -0.176 4.176 19 C 0.195 3.805 20 C -0.135 4.135 21 C -0.148 4.148 22 C -0.161 4.161 23 N -0.525 5.525 24 C 0.353 3.647 25 O -0.478 6.478 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.168 0.832 34 H 0.185 0.815 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 9.960 -19.769 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.182 1.182 13 N -0.347 5.347 14 C 0.332 3.668 15 O -0.445 6.445 16 C -0.227 4.227 17 C -0.047 4.047 18 C -0.195 4.195 19 C 0.057 3.943 20 C -0.154 4.154 21 C -0.184 4.184 22 C -0.199 4.199 23 N -0.245 5.245 24 C 0.174 3.826 25 O -0.287 6.287 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.186 0.814 34 H 0.202 0.798 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.408 9.663 -19.120 21.872 hybrid contribution 1.549 -0.206 1.036 1.875 sum -2.860 9.457 -18.084 20.607 Atomic orbital electron populations 1.21671 0.97253 0.99008 1.00095 1.21797 0.93425 0.99303 1.01413 1.18395 0.93814 0.89032 0.81030 0.98157 1.21568 0.91183 1.39042 1.06833 0.90735 1.25778 1.03333 0.94321 0.95019 1.70051 1.37125 1.38282 1.09857 0.85365 0.79058 0.77332 0.78697 1.20494 1.21158 1.18196 1.46147 1.14944 1.55847 1.17801 1.18229 0.82336 0.79007 0.87227 1.90757 1.51955 1.60621 1.41201 1.21222 0.96351 1.08052 0.97061 1.22090 0.99190 0.92949 0.90479 1.22259 0.97739 0.99730 0.99796 1.20876 0.89590 0.91926 0.91900 1.20903 1.01966 0.99405 0.93094 1.23301 0.97458 1.00410 0.97279 1.23076 1.03740 0.90061 1.02976 1.67009 1.37538 1.19301 1.00649 1.19252 0.85230 0.90771 0.87361 1.84664 1.57719 1.49938 1.36408 0.93725 0.94339 0.95428 0.90789 0.93982 0.92605 0.76254 0.81430 0.79791 0.85815 0.86829 0.85870 0.86754 0.89263 0.72511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.51 71.98 0.61 -5.14 16 2 C -0.12 -5.98 5.45 30.60 0.17 -5.81 16 3 C 0.28 14.26 2.24 44.25 0.10 14.36 16 4 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 5 C -0.55 -28.32 8.73 25.60 0.22 -28.10 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.91 -51.85 11.29 21.45 0.24 -51.61 16 9 Si 0.97 41.14 29.54 68.60 2.03 43.17 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 13 N -0.70 -28.64 4.98 -449.27 -2.24 -30.87 16 14 C 0.55 22.43 6.34 86.69 0.55 22.98 16 15 O -0.56 -27.42 12.32 16.84 0.21 -27.21 16 16 C -0.22 -7.20 5.90 -19.91 -0.12 -7.32 16 17 C -0.02 -0.50 9.64 22.72 0.22 -0.28 16 18 C -0.18 -3.26 9.34 22.32 0.21 -3.06 16 19 C 0.20 4.36 6.46 42.58 0.28 4.63 16 20 C -0.13 -2.09 6.21 -11.54 -0.07 -2.16 16 21 C -0.15 -1.27 9.79 30.62 0.30 -0.97 16 22 C -0.16 -1.92 10.24 30.62 0.31 -1.61 16 23 N -0.53 -15.55 10.28 -296.07 -3.04 -18.60 16 24 C 0.35 11.81 7.77 85.13 0.66 12.47 16 25 O -0.48 -16.80 11.66 -66.34 -0.77 -17.57 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.04 1.78 5.64 -2.39 -0.01 1.77 16 28 H 0.03 1.38 7.84 -2.38 -0.02 1.36 16 29 H 0.07 4.09 5.95 -2.39 -0.01 4.07 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.40 13.55 6.64 -92.71 -0.62 12.94 16 33 H 0.17 3.06 6.52 -2.91 -0.02 3.05 16 34 H 0.18 1.85 6.22 -2.91 -0.02 1.83 16 35 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.11 0.72 6.37 -2.39 -0.02 0.71 16 37 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.41 11.38 9.06 -74.05 -0.67 10.70 16 Total: -1.00 -71.51 330.01 0.12 -71.39 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.19 Total: 30.02 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 3.89 Total: 1.28 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -5.04 Total: -101.08 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -0.57 Total: -44.78 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -71.51 0.12 -71.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.614 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds