Wall clock time and date at job start Tue Mar 31 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50709 * 109.47048 * 2 1 4 4 C 1.40361 * 126.64446 * 265.15069 * 3 2 1 5 5 C 1.35127 * 107.11534 * 180.22545 * 4 3 2 6 6 O 1.33935 * 108.76797 * 359.77857 * 5 4 3 7 7 C 1.34916 * 109.38081 * 0.02562 * 6 5 4 8 8 C 1.46661 * 125.98717 * 179.97438 * 7 6 5 9 9 O 1.21701 * 120.00008 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00051 * 0.02839 * 8 7 6 11 11 C 1.46492 * 120.00190 * 180.02562 * 10 8 7 12 12 H 1.09003 * 115.49722 * 350.37660 * 11 10 8 13 13 C 1.53002 * 117.44370 * 205.00003 * 11 10 8 14 14 H 1.09007 * 119.53985 * 4.10963 * 13 11 10 15 15 C 1.54387 * 118.12678 * 159.21132 * 13 11 10 16 16 N 1.48154 * 104.61939 * 87.18792 * 15 13 11 17 17 C 1.36924 * 127.83843 * 140.41646 * 16 15 13 18 18 H 1.08007 * 120.00258 * 195.57063 * 17 16 15 19 19 C 1.38815 * 120.00155 * 15.57669 * 17 16 15 20 20 N 1.31619 * 120.00218 * 9.09259 * 19 17 16 21 21 Si 1.86804 * 119.99884 * 189.10097 * 19 17 16 22 22 H 1.48489 * 109.47427 * 59.99802 * 21 19 17 23 23 H 1.48504 * 109.46999 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46842 * 299.99171 * 21 19 17 25 25 C 1.48145 * 104.32271 * 320.41607 * 16 15 13 26 26 C 1.53003 * 117.44645 * 135.75867 * 11 10 8 27 27 H 1.09004 * 119.53603 * 355.87622 * 26 11 10 28 28 H 1.09007 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47891 * 300.00190 * 1 2 3 30 30 H 1.09001 * 109.46908 * 60.00331 * 1 2 3 31 31 H 1.08997 * 109.47407 * 240.00026 * 2 1 3 32 32 H 1.09001 * 109.46908 * 119.99669 * 2 1 3 33 33 H 1.08004 * 126.44389 * 359.97438 * 4 3 2 34 34 H 1.07998 * 125.62042 * 179.78475 * 5 4 3 35 35 H 0.97006 * 119.99816 * 359.97438 * 10 8 7 36 36 H 1.08993 * 110.41074 * 205.97406 * 15 13 11 37 37 H 1.09005 * 110.40555 * 328.29274 * 15 13 11 38 38 H 0.96996 * 120.00073 * 180.02562 * 20 19 17 39 39 H 1.08995 * 110.41012 * 158.36774 * 25 16 15 40 40 H 1.09006 * 110.41075 * 280.68502 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4013 2.1790 -1.1222 5 6 2.7946 3.3907 -0.6716 6 8 2.6802 3.4123 0.6626 7 6 2.2144 2.2209 1.0914 8 6 1.9540 1.8486 2.4859 9 8 1.5326 0.7381 2.7507 10 7 2.1815 2.7364 3.4741 11 6 1.9220 2.3644 4.8670 12 1 1.3963 1.4204 5.0104 13 6 1.6243 3.4942 5.8549 14 1 1.5467 4.5191 5.4918 15 6 0.8856 3.1408 7.1637 16 7 1.9606 2.7540 8.1070 17 6 2.0540 3.0492 9.4408 18 1 2.9954 2.9277 9.9561 19 6 0.9389 3.5046 10.1307 20 7 -0.2448 3.4836 9.5555 21 14 1.1182 4.1473 11.8755 22 1 2.0433 5.3088 11.8825 23 1 -0.2106 4.5704 12.3861 24 1 1.6641 3.0742 12.7446 25 6 2.9113 1.9753 7.2798 26 6 2.9749 2.7503 5.9079 27 1 3.9033 3.2208 5.5841 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3793 1.8535 -2.1518 34 1 3.1435 4.2074 -1.2862 35 1 2.5177 3.6215 3.2630 36 1 0.3435 4.0082 7.5403 37 1 0.2021 2.3074 7.0012 38 1 -1.0240 3.8021 10.0375 39 1 3.8975 1.9633 7.7438 40 1 2.5467 0.9579 7.1376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961696934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:59 Heat of formation + Delta-G solvation = 36.494934 kcal Electronic energy + Delta-G solvation = -22503.121969 eV Core-core repulsion = 19093.434115 eV Total energy + Delta-G solvation = -3409.687854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.91700 -39.66160 -38.19202 -35.32723 -34.35553 -32.68797 -31.54677 -30.46893 -29.36713 -27.02855 -25.75300 -24.37406 -23.08450 -21.90236 -20.91876 -20.51280 -19.71692 -19.30553 -18.12283 -16.86162 -16.54370 -16.26904 -16.19193 -14.74045 -14.69837 -14.46121 -14.34344 -13.85122 -13.63496 -13.30795 -13.23699 -12.80217 -12.74018 -12.52700 -12.24828 -11.56518 -11.50898 -11.44176 -11.09410 -10.96729 -10.81756 -10.39811 -10.24433 -10.19023 -10.07240 -9.94398 -9.73481 -9.23631 -8.89810 -8.72543 -8.32775 -6.88135 -5.80285 -3.14750 0.90068 2.12431 2.51942 3.08866 3.13801 3.39196 3.43428 3.44676 4.31530 4.44046 4.46950 4.51913 4.69853 5.12264 5.15186 5.20921 5.32344 5.35363 5.38718 5.43321 5.52642 5.56899 5.72374 5.72955 5.85233 5.87464 6.03763 6.11115 6.17076 6.19494 6.25369 6.50252 6.60326 6.68245 6.80768 6.87879 7.33718 7.50439 7.52539 7.70639 8.11092 8.19647 9.10074 9.72871 10.49792 11.34042 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035592 B = 0.002977 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.494587 B = 9401.963790 C = 9688.562445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.063 4.063 3 C -0.086 4.086 4 C -0.223 4.223 5 C -0.008 4.008 6 O -0.164 6.164 7 C -0.078 4.078 8 C 0.603 3.397 9 O -0.513 6.513 10 N -0.687 5.687 11 C 0.092 3.908 12 H 0.135 0.865 13 C -0.178 4.178 14 H 0.102 0.898 15 C 0.186 3.814 16 N -0.593 5.593 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.914 3.086 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.158 3.842 26 C -0.184 4.184 27 H 0.107 0.893 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.209 0.791 35 H 0.403 0.597 36 H 0.091 0.909 37 H 0.027 0.973 38 H 0.255 0.745 39 H 0.051 0.949 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -0.804 -22.289 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.088 4.088 4 C -0.242 4.242 5 C -0.078 4.078 6 O -0.060 6.060 7 C -0.130 4.130 8 C 0.389 3.611 9 O -0.391 6.391 10 N -0.334 5.334 11 C -0.014 4.014 12 H 0.152 0.848 13 C -0.200 4.200 14 H 0.120 0.880 15 C 0.059 3.941 16 N -0.316 5.316 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.561 5.561 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.209 1.209 25 C 0.031 3.969 26 C -0.205 4.205 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.172 0.828 34 H 0.226 0.774 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.782 -1.285 -21.611 22.171 hybrid contribution 0.340 1.023 0.335 1.129 sum 5.122 -0.262 -21.276 21.885 Atomic orbital electron populations 1.21641 0.94292 1.01902 1.01927 1.20145 0.96439 0.90062 1.03399 1.20645 0.99466 0.97752 0.90982 1.21730 1.07778 0.94549 1.00166 1.24330 1.02608 1.00059 0.80805 1.84069 1.64970 1.33847 1.23071 1.21972 1.10664 0.85331 0.95044 1.16478 0.78244 0.84794 0.81547 1.90865 1.45862 1.20402 1.81947 1.45313 1.65699 1.16483 1.05951 1.21958 1.02770 1.00279 0.76358 0.84764 1.24659 1.00553 0.95956 0.98791 0.88017 1.21071 0.89745 1.00077 0.83163 1.45108 1.22248 1.59002 1.05208 1.18949 0.95037 1.38915 0.82787 0.90536 1.24903 0.94918 1.02062 0.98312 1.69882 0.97906 1.51031 1.37272 0.86177 0.76701 0.78888 0.83852 1.21094 1.21532 1.20943 1.21697 0.94574 0.92942 0.87712 1.25117 0.93358 1.04765 0.97306 0.87473 0.92207 0.92067 0.93200 0.91193 0.89107 0.82767 0.77443 0.76284 0.89039 0.95498 0.93448 0.93087 0.95064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.89 37.16 0.37 -1.12 16 2 C -0.06 -0.69 5.72 -27.88 -0.16 -0.85 16 3 C -0.09 -0.99 5.45 -104.43 -0.57 -1.56 16 4 C -0.22 -1.96 10.83 -39.89 -0.43 -2.39 16 5 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 6 O -0.16 -1.81 10.40 4.98 0.05 -1.76 16 7 C -0.08 -1.01 7.13 -36.80 -0.26 -1.28 16 8 C 0.60 9.17 7.79 -12.86 -0.10 9.07 16 9 O -0.51 -9.07 14.20 5.19 0.07 -8.99 16 10 N -0.69 -9.97 5.56 -55.12 -0.31 -10.28 16 11 C 0.09 1.57 5.92 -67.93 -0.40 1.17 16 12 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 13 C -0.18 -3.39 6.98 -89.22 -0.62 -4.01 16 14 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 15 C 0.19 4.47 5.70 -2.41 -0.01 4.45 16 16 N -0.59 -15.22 3.38 -166.73 -0.56 -15.78 16 17 C -0.23 -6.37 10.35 -15.06 -0.16 -6.53 16 18 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 19 C 0.00 -0.13 5.40 -17.43 -0.09 -0.23 16 20 N -0.92 -26.75 10.86 55.49 0.60 -26.15 16 21 Si 0.91 21.87 29.56 -169.99 -5.03 16.85 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.16 3.35 7.10 -0.57 0.00 3.34 16 26 C -0.18 -3.30 7.34 -87.38 -0.64 -3.94 16 27 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.16 6.73 -51.93 -0.35 0.81 16 33 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.21 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.40 4.97 8.58 -40.82 -0.35 4.62 16 36 H 0.09 2.44 6.51 -51.93 -0.34 2.11 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -31.74 337.50 -8.42 -40.16 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.61 Total: 4.43 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.73 Total: -3.57 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.27 Total: -52.21 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.13 Total: -10.75 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.74 -8.42 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961696934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.658 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds