Wall clock time and date at job start Tue Mar 31 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50709 * 109.47048 * 2 1 4 4 C 1.40361 * 126.64446 * 265.15069 * 3 2 1 5 5 C 1.35127 * 107.11534 * 180.22545 * 4 3 2 6 6 O 1.33935 * 108.76797 * 359.77857 * 5 4 3 7 7 C 1.34916 * 109.38081 * 0.02562 * 6 5 4 8 8 C 1.46661 * 125.98717 * 179.97438 * 7 6 5 9 9 O 1.21701 * 120.00008 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00051 * 0.02839 * 8 7 6 11 11 C 1.46492 * 120.00190 * 180.02562 * 10 8 7 12 12 H 1.09003 * 115.49722 * 350.37660 * 11 10 8 13 13 C 1.53002 * 117.44370 * 205.00003 * 11 10 8 14 14 H 1.09007 * 119.53985 * 4.10963 * 13 11 10 15 15 C 1.54387 * 118.12678 * 159.21132 * 13 11 10 16 16 N 1.48154 * 104.61939 * 87.18792 * 15 13 11 17 17 C 1.36924 * 127.83843 * 140.41646 * 16 15 13 18 18 H 1.08007 * 120.00258 * 195.57063 * 17 16 15 19 19 C 1.38815 * 120.00155 * 15.57669 * 17 16 15 20 20 N 1.31619 * 120.00218 * 9.09259 * 19 17 16 21 21 Si 1.86804 * 119.99884 * 189.10097 * 19 17 16 22 22 H 1.48489 * 109.47427 * 59.99802 * 21 19 17 23 23 H 1.48504 * 109.46999 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46842 * 299.99171 * 21 19 17 25 25 C 1.48145 * 104.32271 * 320.41607 * 16 15 13 26 26 C 1.53003 * 117.44645 * 135.75867 * 11 10 8 27 27 H 1.09004 * 119.53603 * 355.87622 * 26 11 10 28 28 H 1.09007 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47891 * 300.00190 * 1 2 3 30 30 H 1.09001 * 109.46908 * 60.00331 * 1 2 3 31 31 H 1.08997 * 109.47407 * 240.00026 * 2 1 3 32 32 H 1.09001 * 109.46908 * 119.99669 * 2 1 3 33 33 H 1.08004 * 126.44389 * 359.97438 * 4 3 2 34 34 H 1.07998 * 125.62042 * 179.78475 * 5 4 3 35 35 H 0.97006 * 119.99816 * 359.97438 * 10 8 7 36 36 H 1.08993 * 110.41074 * 205.97406 * 15 13 11 37 37 H 1.09005 * 110.40555 * 328.29274 * 15 13 11 38 38 H 0.96996 * 120.00073 * 180.02562 * 20 19 17 39 39 H 1.08995 * 110.41012 * 158.36774 * 25 16 15 40 40 H 1.09006 * 110.41075 * 280.68502 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4013 2.1790 -1.1222 5 6 2.7946 3.3907 -0.6716 6 8 2.6802 3.4123 0.6626 7 6 2.2144 2.2209 1.0914 8 6 1.9540 1.8486 2.4859 9 8 1.5326 0.7381 2.7507 10 7 2.1815 2.7364 3.4741 11 6 1.9220 2.3644 4.8670 12 1 1.3963 1.4204 5.0104 13 6 1.6243 3.4942 5.8549 14 1 1.5467 4.5191 5.4918 15 6 0.8856 3.1408 7.1637 16 7 1.9606 2.7540 8.1070 17 6 2.0540 3.0492 9.4408 18 1 2.9954 2.9277 9.9561 19 6 0.9389 3.5046 10.1307 20 7 -0.2448 3.4836 9.5555 21 14 1.1182 4.1473 11.8755 22 1 2.0433 5.3088 11.8825 23 1 -0.2106 4.5704 12.3861 24 1 1.6641 3.0742 12.7446 25 6 2.9113 1.9753 7.2798 26 6 2.9749 2.7503 5.9079 27 1 3.9033 3.2208 5.5841 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3793 1.8535 -2.1518 34 1 3.1435 4.2074 -1.2862 35 1 2.5177 3.6215 3.2630 36 1 0.3435 4.0082 7.5403 37 1 0.2021 2.3074 7.0012 38 1 -1.0240 3.8021 10.0375 39 1 3.8975 1.9633 7.7438 40 1 2.5467 0.9579 7.1376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961696934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:59 Heat of formation + Delta-G solvation = 16.210301 kcal Electronic energy + Delta-G solvation = -22504.001577 eV Core-core repulsion = 19093.434115 eV Total energy + Delta-G solvation = -3410.567462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.69416 -41.01127 -39.67371 -36.41119 -35.74964 -34.35307 -32.43124 -32.12242 -30.35750 -28.82150 -27.62526 -25.41905 -24.12299 -23.14775 -22.17548 -21.93835 -20.95630 -20.72644 -19.12602 -18.82776 -17.66786 -17.38548 -17.03263 -16.73863 -15.81862 -15.63924 -15.55053 -15.21394 -14.94562 -14.64953 -14.62479 -14.02209 -13.81047 -13.59846 -13.36282 -13.29041 -13.23621 -12.90116 -12.68288 -12.28702 -12.17466 -12.05510 -11.96888 -11.90209 -11.70613 -11.26667 -10.88047 -10.72618 -10.69128 -9.92737 -9.51766 -8.94159 -7.92443 -5.29700 0.00889 1.41964 1.46884 1.50203 1.57098 1.60606 1.99323 2.08135 2.48470 2.83279 3.27744 3.56010 3.68891 3.76756 3.78581 3.87379 3.90878 4.04751 4.26487 4.40260 4.44716 4.47249 4.51246 4.59997 4.73725 4.83827 4.85081 4.96711 5.01207 5.06798 5.23299 5.29160 5.33423 5.34126 5.41678 5.45782 5.49852 5.62656 5.87152 6.15165 6.40100 6.97491 6.98904 7.65924 8.44474 9.21363 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035592 B = 0.002977 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.494587 B = 9401.963790 C = 9688.562445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.086 4.086 4 C -0.233 4.233 5 C 0.016 3.984 6 O -0.172 6.172 7 C -0.115 4.115 8 C 0.601 3.399 9 O -0.549 6.549 10 N -0.678 5.678 11 C 0.113 3.887 12 H 0.112 0.888 13 C -0.179 4.179 14 H 0.124 0.876 15 C 0.190 3.810 16 N -0.616 5.616 17 C -0.244 4.244 18 H 0.084 0.916 19 C -0.062 4.062 20 N -0.948 5.948 21 Si 0.983 3.017 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.150 3.850 26 C -0.164 4.164 27 H 0.139 0.861 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.184 0.816 34 H 0.257 0.743 35 H 0.416 0.584 36 H 0.060 0.940 37 H -0.002 1.002 38 H 0.251 0.749 39 H 0.063 0.937 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 0.387 -24.853 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C -0.089 4.089 4 C -0.251 4.251 5 C -0.053 4.053 6 O -0.068 6.068 7 C -0.167 4.167 8 C 0.390 3.610 9 O -0.429 6.429 10 N -0.326 5.326 11 C 0.007 3.993 12 H 0.130 0.870 13 C -0.200 4.200 14 H 0.141 0.859 15 C 0.064 3.936 16 N -0.340 5.340 17 C -0.373 4.373 18 H 0.101 0.899 19 C -0.256 4.256 20 N -0.595 5.595 21 Si 0.811 3.189 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.201 1.201 25 C 0.024 3.976 26 C -0.185 4.185 27 H 0.157 0.843 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.201 0.799 34 H 0.273 0.727 35 H 0.253 0.747 36 H 0.078 0.922 37 H 0.016 0.984 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.701 -0.088 -24.207 25.117 hybrid contribution -0.232 0.596 0.979 1.169 sum 6.470 0.508 -23.228 24.117 Atomic orbital electron populations 1.21600 0.94227 1.02339 1.01190 1.20168 0.96487 0.90184 1.03409 1.20978 0.98238 0.97839 0.91822 1.22085 1.07877 0.94447 1.00705 1.25366 0.99401 1.00920 0.79655 1.84058 1.65073 1.32883 1.24755 1.21474 1.14305 0.86940 0.93958 1.16803 0.77334 0.84258 0.82623 1.90844 1.47390 1.21831 1.82815 1.45104 1.65818 1.17201 1.04502 1.21493 1.01628 0.98454 0.77774 0.87008 1.24334 1.00622 0.97566 0.97503 0.85863 1.20790 0.89670 0.97586 0.85529 1.45398 1.23293 1.59998 1.05319 1.19373 0.95388 1.38419 0.84103 0.89861 1.25783 0.94595 1.02726 1.02454 1.70090 0.98491 1.52217 1.38730 0.85091 0.76399 0.78468 0.78976 1.20073 1.21991 1.20070 1.21827 0.94120 0.92587 0.89064 1.25028 0.94176 1.03462 0.95803 0.84321 0.91277 0.95014 0.91550 0.88547 0.91656 0.79859 0.72730 0.74673 0.92199 0.98414 0.94036 0.91847 0.95775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.89 71.98 0.71 -2.10 16 2 C -0.07 -1.37 5.72 29.85 0.17 -1.19 16 3 C -0.09 -1.84 5.45 -19.74 -0.11 -1.94 16 4 C -0.23 -3.20 10.83 22.07 0.24 -2.96 16 5 C 0.02 0.18 12.08 67.10 0.81 0.99 16 6 O -0.17 -3.32 10.40 -5.10 -0.05 -3.38 16 7 C -0.12 -2.86 7.13 24.07 0.17 -2.69 16 8 C 0.60 18.37 7.79 86.44 0.67 19.04 16 9 O -0.55 -20.17 14.20 -4.35 -0.06 -20.24 16 10 N -0.68 -19.20 5.56 -446.52 -2.48 -21.68 16 11 C 0.11 3.88 5.92 44.99 0.27 4.15 16 12 H 0.11 4.44 7.40 -2.39 -0.02 4.42 16 13 C -0.18 -6.81 6.98 -9.89 -0.07 -6.88 16 14 H 0.12 4.16 8.14 -2.38 -0.02 4.14 16 15 C 0.19 9.58 5.70 86.53 0.49 10.07 16 16 N -0.62 -32.44 3.38 -681.40 -2.30 -34.74 16 17 C -0.24 -13.83 10.35 84.04 0.87 -12.96 16 18 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 19 C -0.06 -3.53 5.40 84.86 0.46 -3.08 16 20 N -0.95 -57.54 10.86 21.65 0.24 -57.30 16 21 Si 0.98 45.59 29.56 68.60 2.03 47.62 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.15 6.39 7.10 87.73 0.62 7.01 16 26 C -0.16 -5.69 7.34 -8.69 -0.06 -5.75 16 27 H 0.14 4.02 8.14 -2.38 -0.02 4.00 16 28 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.03 0.83 7.91 -2.39 -0.02 0.81 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.71 6.73 -2.39 -0.02 1.69 16 33 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.26 0.23 8.06 -2.91 -0.02 0.21 16 35 H 0.42 9.53 8.58 -92.70 -0.80 8.74 16 36 H 0.06 3.37 6.51 -2.39 -0.02 3.35 16 37 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 38 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -72.61 337.50 2.87 -69.74 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.26 Total: 18.26 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 5.25 Total: 1.71 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -4.55 Total: -113.72 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.11 Total: -23.61 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -72.61 2.87 -69.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961696934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.953 kcal (2) G-P(sol) polarization free energy of solvation -72.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds