Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47182 * 2 1 4 4 O 1.33644 * 125.80084 * 270.02513 * 3 2 1 5 5 C 1.34219 * 110.91018 * 179.73693 * 4 3 2 6 6 C 1.34187 * 109.12169 * 359.97438 * 5 4 3 7 7 C 1.36412 * 125.79794 * 89.71294 * 3 2 1 8 8 C 1.47384 * 127.19681 * 0.27118 * 7 3 2 9 9 O 1.21616 * 119.99635 * 359.97438 * 8 7 3 10 10 N 1.34770 * 120.00049 * 179.97438 * 8 7 3 11 11 C 1.47867 * 126.94969 * 0.02562 * 10 8 7 12 12 C 1.56018 * 105.10803 * 181.98088 * 11 10 8 13 13 H 1.08993 * 116.24945 * 158.83217 * 12 11 10 14 14 C 1.57087 * 99.60707 * 32.80088 * 12 11 10 15 15 C 1.49298 * 126.94391 * 179.70265 * 10 8 7 16 16 H 1.09003 * 116.14644 * 15.86874 * 15 10 8 17 17 C 1.58424 * 103.70534 * 246.54880 * 15 10 8 18 18 N 1.47872 * 104.83035 * 288.54397 * 17 15 10 19 19 C 1.36937 * 126.94243 * 182.29956 * 18 17 15 20 20 H 1.07996 * 119.99638 * 173.68233 * 19 18 17 21 21 C 1.38807 * 120.00399 * 353.68434 * 19 18 17 22 22 N 1.31625 * 119.99830 * 6.42428 * 21 19 18 23 23 Si 1.86797 * 120.00257 * 186.43009 * 21 19 18 24 24 H 1.48500 * 109.47313 * 94.98149 * 23 21 19 25 25 H 1.48500 * 109.47217 * 214.98339 * 23 21 19 26 26 H 1.48499 * 109.46956 * 334.98364 * 23 21 19 27 27 H 1.08996 * 109.47137 * 299.99597 * 1 2 3 28 28 H 1.09000 * 109.46901 * 60.00179 * 1 2 3 29 29 H 1.08999 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47137 * 240.00402 * 2 1 3 31 31 H 1.09000 * 109.46901 * 119.99821 * 2 1 3 32 32 H 1.07995 * 125.44152 * 180.02562 * 5 4 3 33 33 H 1.07998 * 127.02440 * 180.02562 * 6 5 4 34 34 H 1.09004 * 110.31000 * 300.88917 * 11 10 8 35 35 H 1.08998 * 110.31929 * 63.06834 * 11 10 8 36 36 H 1.08995 * 112.36637 * 64.27707 * 14 12 11 37 37 H 1.08993 * 112.36443 * 191.71609 * 14 12 11 38 38 H 1.08997 * 110.19142 * 169.85518 * 17 15 10 39 39 H 1.09006 * 110.78753 * 47.53493 * 17 15 10 40 40 H 0.97000 * 119.99670 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2925 2.1581 -1.0839 5 6 2.7196 3.3828 -0.7390 6 6 2.7489 3.4775 0.5992 7 6 2.2931 2.1750 1.1064 8 6 2.1480 1.7691 2.5158 9 8 1.7563 0.6507 2.7892 10 7 2.4495 2.6373 3.5015 11 6 2.9347 4.0254 3.3458 12 6 3.1670 4.5405 4.8001 13 1 3.8447 5.3872 4.9090 14 6 3.6065 3.1977 5.4867 15 6 2.3546 2.3942 4.9715 16 1 2.2679 1.3528 5.2815 17 6 1.2004 3.3730 5.4401 18 7 1.7894 4.7259 5.3444 19 6 1.1918 5.9098 5.6860 20 1 1.7611 6.8273 5.6667 21 6 -0.1456 5.9305 6.0569 22 7 -0.8057 4.8011 6.2030 23 14 -1.0089 7.5612 6.3486 24 1 -1.7124 7.9776 5.1089 25 1 -1.9937 7.4100 7.4497 26 1 -0.0066 8.5925 6.7190 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.9949 4.1672 -1.4284 33 1 3.0466 4.3352 1.1841 34 1 3.8697 4.0387 2.7856 35 1 2.1833 4.6349 2.8439 36 1 4.5439 2.8137 5.0845 37 1 3.6295 3.2759 6.5736 38 1 0.9176 3.1553 6.4700 39 1 0.3333 3.2904 4.7847 40 1 -1.7402 4.8156 6.4626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032381063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = 39.227078 kcal Electronic energy + Delta-G solvation = -23865.847026 eV Core-core repulsion = 20456.277647 eV Total energy + Delta-G solvation = -3409.569379 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.46669 -39.85227 -37.66081 -33.99654 -33.68441 -32.71754 -31.24890 -29.01407 -28.72285 -28.42793 -25.28686 -24.45181 -23.37007 -22.34200 -21.42575 -19.78070 -19.61275 -18.45239 -17.50714 -16.52264 -16.19979 -15.88234 -15.59471 -15.02047 -14.49243 -14.30590 -14.15044 -13.77598 -13.41318 -13.09675 -12.86843 -12.58724 -12.21895 -12.01700 -11.87753 -11.60881 -11.49952 -11.34404 -11.01258 -10.93327 -10.87956 -10.71934 -10.58240 -10.22364 -10.08579 -9.68639 -9.62471 -9.47662 -8.69939 -8.52781 -7.91439 -6.92593 -5.79318 -3.12963 1.54481 2.20422 2.88302 3.36228 3.41063 3.43925 3.46177 3.74870 4.40820 4.56334 4.84566 4.95880 5.12051 5.15431 5.20895 5.30174 5.35021 5.46158 5.55018 5.59728 5.61951 5.69315 5.72741 5.87792 5.92924 6.04387 6.14867 6.20482 6.28082 6.30438 6.39147 6.42441 6.53323 6.57949 6.71821 7.13906 7.39594 7.52036 7.71497 8.08288 8.14125 8.65579 9.08673 9.69748 10.39817 11.33212 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.004845 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.160039 B = 5778.355534 C = 5948.687667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.068 3.932 4 O -0.179 6.179 5 C -0.051 4.051 6 C -0.189 4.189 7 C -0.228 4.228 8 C 0.600 3.400 9 O -0.557 6.557 10 N -0.597 5.597 11 C 0.083 3.917 12 C 0.139 3.861 13 H 0.105 0.895 14 C -0.151 4.151 15 C 0.097 3.903 16 H 0.115 0.885 17 C 0.176 3.824 18 N -0.597 5.597 19 C -0.233 4.233 20 H 0.081 0.919 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.205 0.795 33 H 0.165 0.835 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.668 -4.951 -11.482 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C 0.015 3.985 4 O -0.075 6.075 5 C -0.116 4.116 6 C -0.208 4.208 7 C -0.232 4.232 8 C 0.391 3.609 9 O -0.438 6.438 10 N -0.329 5.329 11 C -0.042 4.042 12 C 0.030 3.970 13 H 0.123 0.877 14 C -0.191 4.191 15 C -0.006 4.006 16 H 0.133 0.867 17 C 0.051 3.949 18 N -0.321 5.321 19 C -0.361 4.361 20 H 0.099 0.901 21 C -0.201 4.201 22 N -0.563 5.563 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.222 0.778 33 H 0.182 0.818 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.139 -5.562 -11.586 15.212 hybrid contribution -0.528 1.279 0.185 1.396 sum 7.611 -4.283 -11.401 14.361 Atomic orbital electron populations 1.21691 0.93453 1.02420 1.02549 1.20336 0.96940 0.86490 1.04678 1.22783 0.98074 0.94502 0.83121 1.83717 1.65661 1.23089 1.35071 1.23836 1.05209 0.86111 0.96451 1.23411 1.04646 0.98297 0.94434 1.21220 1.12446 0.95506 0.94025 1.16768 0.77376 0.83758 0.83026 1.90702 1.48884 1.20411 1.83837 1.48924 1.64000 1.13540 1.06452 1.23519 0.97601 0.82290 1.00817 1.23192 0.89172 0.94872 0.89738 0.87733 1.24186 0.96202 0.97723 1.00979 1.24891 0.98009 0.99676 0.77981 0.86718 1.22387 0.91180 0.81702 0.99642 1.45205 1.09695 1.02942 1.74270 1.19043 0.92761 0.84755 1.39512 0.90136 1.24842 0.96578 0.97101 1.01612 1.69925 1.09760 1.24020 1.52635 0.86119 0.79521 0.82799 0.77424 1.21639 1.21742 1.20548 0.91576 0.92839 0.91527 0.90457 0.86891 0.77824 0.81757 0.92680 0.90823 0.91539 0.89799 0.93072 0.93032 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 37.16 0.37 -1.43 16 2 C -0.05 -0.61 5.94 -27.88 -0.17 -0.78 16 3 C 0.07 1.03 6.63 -34.97 -0.23 0.79 16 4 O -0.18 -2.45 10.52 7.66 0.08 -2.37 16 5 C -0.05 -0.61 12.03 29.30 0.35 -0.25 16 6 C -0.19 -2.70 9.57 -37.45 -0.36 -3.05 16 7 C -0.23 -3.86 6.26 -103.27 -0.65 -4.50 16 8 C 0.60 11.76 7.89 -12.54 -0.10 11.66 16 9 O -0.56 -11.82 15.19 5.26 0.08 -11.74 16 10 N -0.60 -11.47 2.95 -156.33 -0.46 -11.94 16 11 C 0.08 1.45 4.38 -1.68 -0.01 1.44 16 12 C 0.14 2.58 5.47 -62.55 -0.34 2.24 16 13 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 14 C -0.15 -2.57 6.86 -22.10 -0.15 -2.72 16 15 C 0.10 1.90 5.35 -60.97 -0.33 1.57 16 16 H 0.12 2.17 8.05 -51.93 -0.42 1.76 16 17 C 0.18 4.25 4.89 -0.29 0.00 4.25 16 18 N -0.60 -14.33 3.02 -154.77 -0.47 -14.80 16 19 C -0.23 -6.17 10.36 -15.06 -0.16 -6.32 16 20 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 21 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -26.79 10.61 55.49 0.59 -26.20 16 23 Si 0.91 21.66 29.56 -169.99 -5.02 16.63 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.11 1.62 6.49 -51.93 -0.34 1.28 16 32 H 0.21 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.17 2.17 4.96 -52.49 -0.26 1.91 16 34 H 0.06 0.80 6.93 -51.93 -0.36 0.44 16 35 H 0.07 1.42 7.22 -51.93 -0.37 1.04 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.05 1.35 7.64 -51.93 -0.40 0.95 16 39 H 0.05 1.45 7.53 -51.93 -0.39 1.05 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -32.00 324.17 -7.65 -39.65 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.47 Total: 3.20 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.86 Total: 2.68 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.34 Total: -52.93 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.16 Total: -14.11 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.00 -7.65 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032381063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.875 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds