Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47182 * 2 1 4 4 O 1.33644 * 125.80084 * 270.02513 * 3 2 1 5 5 C 1.34219 * 110.91018 * 179.73693 * 4 3 2 6 6 C 1.34187 * 109.12169 * 359.97438 * 5 4 3 7 7 C 1.36412 * 125.79794 * 89.71294 * 3 2 1 8 8 C 1.47384 * 127.19681 * 0.27118 * 7 3 2 9 9 O 1.21616 * 119.99635 * 359.97438 * 8 7 3 10 10 N 1.34770 * 120.00049 * 179.97438 * 8 7 3 11 11 C 1.47867 * 126.94969 * 0.02562 * 10 8 7 12 12 C 1.56018 * 105.10803 * 181.98088 * 11 10 8 13 13 H 1.08993 * 116.24945 * 158.83217 * 12 11 10 14 14 C 1.57087 * 99.60707 * 32.80088 * 12 11 10 15 15 C 1.49298 * 126.94391 * 179.70265 * 10 8 7 16 16 H 1.09003 * 116.14644 * 15.86874 * 15 10 8 17 17 C 1.58424 * 103.70534 * 246.54880 * 15 10 8 18 18 N 1.47872 * 104.83035 * 288.54397 * 17 15 10 19 19 C 1.36937 * 126.94243 * 182.29956 * 18 17 15 20 20 H 1.07996 * 119.99638 * 173.68233 * 19 18 17 21 21 C 1.38807 * 120.00399 * 353.68434 * 19 18 17 22 22 N 1.31625 * 119.99830 * 6.42428 * 21 19 18 23 23 Si 1.86797 * 120.00257 * 186.43009 * 21 19 18 24 24 H 1.48500 * 109.47313 * 94.98149 * 23 21 19 25 25 H 1.48500 * 109.47217 * 214.98339 * 23 21 19 26 26 H 1.48499 * 109.46956 * 334.98364 * 23 21 19 27 27 H 1.08996 * 109.47137 * 299.99597 * 1 2 3 28 28 H 1.09000 * 109.46901 * 60.00179 * 1 2 3 29 29 H 1.08999 * 109.47225 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47137 * 240.00402 * 2 1 3 31 31 H 1.09000 * 109.46901 * 119.99821 * 2 1 3 32 32 H 1.07995 * 125.44152 * 180.02562 * 5 4 3 33 33 H 1.07998 * 127.02440 * 180.02562 * 6 5 4 34 34 H 1.09004 * 110.31000 * 300.88917 * 11 10 8 35 35 H 1.08998 * 110.31929 * 63.06834 * 11 10 8 36 36 H 1.08995 * 112.36637 * 64.27707 * 14 12 11 37 37 H 1.08993 * 112.36443 * 191.71609 * 14 12 11 38 38 H 1.08997 * 110.19142 * 169.85518 * 17 15 10 39 39 H 1.09006 * 110.78753 * 47.53493 * 17 15 10 40 40 H 0.97000 * 119.99670 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2925 2.1581 -1.0839 5 6 2.7196 3.3828 -0.7390 6 6 2.7489 3.4775 0.5992 7 6 2.2931 2.1750 1.1064 8 6 2.1480 1.7691 2.5158 9 8 1.7563 0.6507 2.7892 10 7 2.4495 2.6373 3.5015 11 6 2.9347 4.0254 3.3458 12 6 3.1670 4.5405 4.8001 13 1 3.8447 5.3872 4.9090 14 6 3.6065 3.1977 5.4867 15 6 2.3546 2.3942 4.9715 16 1 2.2679 1.3528 5.2815 17 6 1.2004 3.3730 5.4401 18 7 1.7894 4.7259 5.3444 19 6 1.1918 5.9098 5.6860 20 1 1.7611 6.8273 5.6667 21 6 -0.1456 5.9305 6.0569 22 7 -0.8057 4.8011 6.2030 23 14 -1.0089 7.5612 6.3486 24 1 -1.7124 7.9776 5.1089 25 1 -1.9937 7.4100 7.4497 26 1 -0.0066 8.5925 6.7190 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.9949 4.1672 -1.4284 33 1 3.0466 4.3352 1.1841 34 1 3.8697 4.0387 2.7856 35 1 2.1833 4.6349 2.8439 36 1 4.5439 2.8137 5.0845 37 1 3.6295 3.2759 6.5736 38 1 0.9176 3.1553 6.4700 39 1 0.3333 3.2904 4.7847 40 1 -1.7402 4.8156 6.4626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032381063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = 19.378840 kcal Electronic energy + Delta-G solvation = -23866.707711 eV Core-core repulsion = 20456.277647 eV Total energy + Delta-G solvation = -3410.430064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.55681 -41.40991 -39.21560 -35.55326 -34.97863 -34.07935 -32.88159 -30.65113 -30.27726 -29.69657 -27.04003 -25.95272 -24.68266 -23.71019 -22.65796 -21.37100 -21.09461 -19.81182 -19.04413 -18.11738 -17.48409 -17.20915 -17.12512 -16.43985 -16.13406 -15.73014 -15.46169 -15.18183 -14.80876 -14.70328 -14.15800 -13.70977 -13.64417 -13.48641 -13.29581 -13.19227 -13.14859 -12.82837 -12.74875 -12.49315 -12.30441 -12.13164 -12.02334 -11.98425 -11.83801 -11.54788 -11.01940 -10.80265 -10.72173 -9.71637 -9.39071 -8.90680 -7.86696 -5.21707 0.33381 1.14456 1.45869 1.47448 1.56412 1.78821 2.06658 2.33861 2.47507 3.31249 3.37843 3.57410 3.60724 3.80715 3.85538 3.92789 3.96642 4.13353 4.18143 4.28100 4.41411 4.52934 4.54354 4.65776 4.74701 4.85134 4.90315 4.93538 5.00065 5.02574 5.09466 5.11980 5.22824 5.26579 5.38336 5.43709 5.54718 5.64190 6.05896 6.08717 6.64771 7.01463 7.15507 7.69742 8.41270 9.25180 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.004845 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.160039 B = 5778.355534 C = 5948.687667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C 0.069 3.931 4 O -0.176 6.176 5 C -0.027 4.027 6 C -0.211 4.211 7 C -0.263 4.263 8 C 0.591 3.409 9 O -0.586 6.586 10 N -0.603 5.603 11 C 0.093 3.907 12 C 0.134 3.866 13 H 0.137 0.863 14 C -0.128 4.128 15 C 0.100 3.900 16 H 0.116 0.884 17 C 0.188 3.812 18 N -0.616 5.616 19 C -0.230 4.230 20 H 0.098 0.902 21 C -0.071 4.071 22 N -0.957 5.957 23 Si 0.976 3.024 24 H -0.293 1.293 25 H -0.302 1.302 26 H -0.258 1.258 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.173 0.827 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.015 0.985 39 H -0.002 1.002 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.307 -3.733 -13.673 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C 0.015 3.985 4 O -0.072 6.072 5 C -0.091 4.091 6 C -0.229 4.229 7 C -0.268 4.268 8 C 0.383 3.617 9 O -0.469 6.469 10 N -0.335 5.335 11 C -0.031 4.031 12 C 0.028 3.972 13 H 0.154 0.846 14 C -0.167 4.167 15 C -0.003 4.003 16 H 0.134 0.866 17 C 0.062 3.938 18 N -0.340 5.340 19 C -0.358 4.358 20 H 0.115 0.885 21 C -0.264 4.264 22 N -0.606 5.606 23 Si 0.805 3.195 24 H -0.221 1.221 25 H -0.229 1.229 26 H -0.182 1.182 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.269 0.731 33 H 0.190 0.810 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.033 0.967 39 H 0.016 0.984 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.844 -4.316 -13.801 18.075 hybrid contribution -1.316 0.881 0.798 1.773 sum 9.528 -3.435 -13.003 16.482 Atomic orbital electron populations 1.21655 0.93329 1.03445 1.01208 1.20383 0.96934 0.85779 1.05372 1.23058 0.97200 0.95150 0.83048 1.83758 1.65356 1.23723 1.34343 1.24712 1.02148 0.85828 0.96456 1.23528 1.06227 0.97577 0.95612 1.21231 1.14968 0.97702 0.92862 1.17276 0.76655 0.83476 0.84279 1.90670 1.50044 1.21674 1.84543 1.49008 1.64153 1.14335 1.05984 1.23422 0.98684 0.80844 1.00175 1.23619 0.86812 0.96750 0.90031 0.84553 1.24095 0.96013 0.95608 1.00974 1.24739 0.97551 0.99019 0.78969 0.86576 1.21967 0.91557 0.83851 0.96403 1.45453 1.12069 1.02031 1.74451 1.19555 0.92951 0.86181 1.37161 0.88479 1.25694 0.97766 1.00049 1.02853 1.70173 1.09305 1.26228 1.54937 0.85081 0.78386 0.79558 0.76485 1.22066 1.22880 1.18249 0.95287 0.91621 0.89415 0.87140 0.88712 0.73068 0.80958 0.88472 0.92910 0.87905 0.89771 0.96712 0.98364 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.89 71.98 0.71 -2.71 16 2 C -0.05 -1.19 5.94 29.85 0.18 -1.02 16 3 C 0.07 1.99 6.63 25.26 0.17 2.15 16 4 O -0.18 -4.30 10.52 4.50 0.05 -4.25 16 5 C -0.03 -0.54 12.03 66.90 0.80 0.27 16 6 C -0.21 -5.52 9.57 23.65 0.23 -5.30 16 7 C -0.26 -8.76 6.26 -18.99 -0.12 -8.88 16 8 C 0.59 23.53 7.89 86.65 0.68 24.22 16 9 O -0.59 -25.87 15.19 -4.08 -0.06 -25.93 16 10 N -0.60 -23.15 2.95 -766.75 -2.26 -25.41 16 11 C 0.09 3.07 4.38 87.16 0.38 3.45 16 12 C 0.13 4.67 5.47 46.93 0.26 4.93 16 13 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 14 C -0.13 -4.05 6.86 33.60 0.23 -3.82 16 15 C 0.10 3.99 5.35 47.95 0.26 4.25 16 16 H 0.12 4.55 8.05 -2.39 -0.02 4.53 16 17 C 0.19 9.60 4.89 88.06 0.43 10.03 16 18 N -0.62 -29.79 3.02 -643.56 -1.95 -31.73 16 19 C -0.23 -12.19 10.36 84.03 0.87 -11.32 16 20 H 0.10 4.72 7.84 -2.91 -0.02 4.70 16 21 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 22 N -0.96 -59.08 10.61 21.65 0.23 -58.85 16 23 Si 0.98 45.38 29.56 68.60 2.03 47.41 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 2.74 6.49 -2.39 -0.02 2.73 16 32 H 0.25 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.17 4.10 4.96 -2.91 -0.01 4.08 16 34 H 0.10 2.45 6.93 -2.39 -0.02 2.43 16 35 H 0.05 1.99 7.22 -2.39 -0.02 1.97 16 36 H 0.10 2.60 8.14 -2.39 -0.02 2.59 16 37 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.01 0.84 7.64 -2.39 -0.02 0.82 16 39 H 0.00 -0.11 7.53 -2.38 -0.02 -0.13 16 40 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -74.88 324.17 4.63 -70.25 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.05 Total: 15.80 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.54 Total: 12.72 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.98 Total: -116.00 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.01 Total: -30.18 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.88 4.63 -70.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032381063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.633 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds