Wall clock time and date at job start Tue Mar 31 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50694 * 109.46970 * 2 1 4 4 C 1.35127 * 125.62015 * 89.99603 * 3 2 1 5 5 C 1.40372 * 107.11794 * 179.97438 * 4 3 2 6 6 C 1.36547 * 106.70616 * 0.02562 * 5 4 3 7 7 C 1.46653 * 125.98698 * 179.97438 * 6 5 4 8 8 O 1.21694 * 119.99937 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99827 * 180.02562 * 7 6 5 10 10 C 1.47873 * 126.94763 * 359.97438 * 9 7 6 11 11 C 1.58432 * 104.83272 * 182.30266 * 10 9 7 12 12 H 1.08997 * 116.62182 * 159.51623 * 11 10 9 13 13 C 1.57437 * 99.61966 * 32.32875 * 11 10 9 14 14 C 1.49292 * 126.94377 * 180.02562 * 9 7 6 15 15 H 1.09001 * 116.15446 * 15.84247 * 14 9 7 16 16 C 1.56021 * 104.09432 * 246.69698 * 14 9 7 17 17 N 1.47864 * 105.10416 * 287.92273 * 16 14 9 18 18 C 1.36938 * 126.94685 * 181.97612 * 17 16 14 19 19 H 1.07999 * 120.00325 * 180.02562 * 18 17 16 20 20 C 1.38815 * 119.99817 * 0.02779 * 18 17 16 21 21 N 1.31621 * 119.99673 * 359.71804 * 20 18 17 22 22 Si 1.86795 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47274 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.47015 * 209.99478 * 22 20 18 25 25 H 1.48498 * 109.47362 * 329.99904 * 22 20 18 26 26 O 1.33939 * 125.61469 * 270.23710 * 3 2 1 27 27 H 1.09002 * 109.46656 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47120 * 300.00606 * 1 2 3 29 29 H 1.09000 * 109.46775 * 60.00587 * 1 2 3 30 30 H 1.08994 * 109.47120 * 239.99394 * 2 1 3 31 31 H 1.09000 * 109.46775 * 119.99413 * 2 1 3 32 32 H 1.07997 * 126.44419 * 359.96629 * 4 3 2 33 33 H 1.07994 * 126.64783 * 180.02562 * 5 4 3 34 34 H 1.08995 * 110.31256 * 300.90921 * 10 9 7 35 35 H 1.08997 * 110.31019 * 62.99270 * 10 9 7 36 36 H 1.09001 * 112.52781 * 192.40379 * 13 11 10 37 37 H 1.09000 * 112.31808 * 64.86881 * 13 11 10 38 38 H 1.08995 * 110.31611 * 169.01169 * 16 14 9 39 39 H 1.09002 * 110.30947 * 46.82382 * 16 14 9 40 40 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1628 1.0984 5 6 2.7389 3.4176 0.6530 6 6 2.7245 3.3773 -0.7118 7 6 3.1108 4.4701 -1.6103 8 8 3.4868 5.5321 -1.1502 9 7 3.0493 4.2982 -2.9456 10 6 2.6187 3.0809 -3.6662 11 6 2.8064 3.4298 -5.2002 12 1 2.8797 2.5869 -5.8874 13 6 4.0505 4.3895 -5.1014 14 6 3.4032 5.2981 -3.9963 15 1 3.9904 6.1549 -3.6658 16 6 2.0424 5.6198 -4.6884 17 7 1.7156 4.4117 -5.4760 18 6 0.6294 4.2283 -6.2894 19 1 0.5001 3.2940 -6.8153 20 6 -0.3057 5.2435 -6.4379 21 7 -0.1511 6.3802 -5.7925 22 14 -1.7872 4.9937 -7.5479 23 1 -2.9055 4.4175 -6.7588 24 1 -2.2049 6.3001 -8.1174 25 1 -1.4290 4.0650 -8.6499 26 8 2.2881 2.1576 -1.0889 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.1832 1.8494 2.1259 33 1 3.0348 4.2530 1.2701 34 1 3.2503 2.2358 -3.3925 35 1 1.5746 2.8595 -3.4448 36 1 4.2344 4.9316 -6.0290 37 1 4.9428 3.8752 -4.7445 38 1 2.1468 6.4831 -5.3454 39 1 1.2714 5.8036 -3.9401 40 1 -0.8047 7.0894 -5.8960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032481288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:07 Heat of formation + Delta-G solvation = 35.375077 kcal Electronic energy + Delta-G solvation = -23673.258557 eV Core-core repulsion = 20263.522142 eV Total energy + Delta-G solvation = -3409.736415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.59800 -39.86704 -37.75464 -34.38218 -33.64457 -32.77325 -31.61751 -29.42103 -28.55650 -28.31350 -25.25379 -24.61356 -23.38172 -22.07420 -21.12733 -20.30224 -19.80141 -18.89875 -17.67928 -16.53007 -16.34134 -15.91058 -15.58977 -14.93156 -14.50540 -14.45407 -14.01695 -13.40046 -13.25937 -13.16514 -13.07534 -12.89225 -12.50439 -12.10436 -11.94246 -11.74769 -11.66750 -11.33136 -11.22853 -11.05368 -10.86756 -10.76747 -10.61253 -10.26393 -10.09426 -9.93637 -9.86287 -9.64068 -8.72457 -8.49428 -8.00847 -6.93599 -5.77804 -3.12281 1.23639 2.39926 2.72937 3.35901 3.37417 3.41329 3.44042 3.52683 4.41292 4.48207 4.75518 4.94020 4.96850 5.03064 5.11395 5.16275 5.26271 5.34606 5.52677 5.57817 5.62247 5.64359 5.73364 5.75078 5.88756 5.91870 5.98768 6.03445 6.18659 6.29014 6.37912 6.43818 6.47241 6.58147 6.67110 7.03724 7.40479 7.47249 7.70391 7.96387 8.08782 8.41950 9.08984 9.69936 10.38880 11.34485 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.005188 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.686143 B = 5395.331032 C = 6304.445895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.045 4.045 3 C 0.011 3.989 4 C -0.222 4.222 5 C -0.131 4.131 6 C -0.060 4.060 7 C 0.610 3.390 8 O -0.537 6.537 9 N -0.595 5.595 10 C 0.086 3.914 11 C 0.142 3.858 12 H 0.109 0.891 13 C -0.150 4.150 14 C 0.098 3.902 15 H 0.116 0.884 16 C 0.174 3.826 17 N -0.597 5.597 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 O -0.152 6.152 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 -11.938 9.943 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.082 4.082 3 C -0.042 4.042 4 C -0.241 4.241 5 C -0.151 4.151 6 C -0.112 4.112 7 C 0.398 3.602 8 O -0.418 6.418 9 N -0.326 5.326 10 C -0.040 4.040 11 C 0.033 3.967 12 H 0.127 0.873 13 C -0.189 4.189 14 C -0.004 4.004 15 H 0.134 0.866 16 C 0.049 3.951 17 N -0.321 5.321 18 C -0.360 4.360 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 O -0.047 6.047 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.970 -11.295 9.829 16.119 hybrid contribution -0.964 0.002 -0.167 0.978 sum 5.006 -11.293 9.662 15.683 Atomic orbital electron populations 1.21804 0.93614 1.02424 1.03093 1.20150 0.96644 0.87200 1.04217 1.22810 1.01778 0.95159 0.84424 1.21497 1.08719 0.94393 0.99493 1.21863 1.01582 0.98767 0.92928 1.22195 1.09014 0.85478 0.94493 1.16163 0.78666 0.84959 0.80379 1.90834 1.49952 1.25477 1.75521 1.49076 1.62745 1.16997 1.03796 1.23807 0.99599 0.85379 0.95193 1.23729 0.88442 0.93319 0.91185 0.87331 1.24181 0.97192 0.98813 0.98732 1.24390 0.99322 0.91677 0.84978 0.86644 1.21947 0.89763 0.89904 0.93523 1.45267 1.23236 1.11266 1.52295 1.19050 0.98013 0.99737 1.19189 0.90112 1.24826 0.99020 0.96192 1.00208 1.69913 1.36567 1.05092 1.45028 0.86110 0.82660 0.76915 0.79988 1.21640 1.21648 1.20596 1.84145 1.64026 1.22103 1.34434 0.91519 0.92142 0.91815 0.89762 0.88786 0.83053 0.82502 0.92657 0.90846 0.89422 0.91576 0.92334 0.93413 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.90 37.16 0.37 -0.95 16 2 C -0.04 -0.40 6.47 -27.88 -0.18 -0.58 16 3 C 0.01 0.14 6.57 -35.42 -0.23 -0.09 16 4 C -0.22 -2.76 10.77 -39.89 -0.43 -3.19 16 5 C -0.13 -1.98 10.62 -39.39 -0.42 -2.39 16 6 C -0.06 -1.05 6.97 -36.80 -0.26 -1.30 16 7 C 0.61 12.32 7.86 -12.86 -0.10 12.21 16 8 O -0.54 -11.97 17.21 5.19 0.09 -11.88 16 9 N -0.59 -11.76 2.95 -156.76 -0.46 -12.22 16 10 C 0.09 1.57 5.11 -0.29 0.00 1.57 16 11 C 0.14 2.69 5.63 -60.94 -0.34 2.35 16 12 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 13 C -0.15 -2.56 6.85 -22.13 -0.15 -2.71 16 14 C 0.10 1.95 5.19 -62.58 -0.32 1.62 16 15 H 0.12 2.18 8.05 -51.93 -0.42 1.77 16 16 C 0.17 4.22 4.75 -1.68 -0.01 4.21 16 17 N -0.60 -14.47 3.02 -154.60 -0.47 -14.94 16 18 C -0.23 -6.19 10.38 -15.06 -0.16 -6.35 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -26.93 10.56 55.49 0.59 -26.34 16 22 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 O -0.15 -2.44 8.52 4.97 0.04 -2.40 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.06 0.89 7.76 -51.93 -0.40 0.48 16 35 H 0.07 1.51 7.94 -51.93 -0.41 1.10 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.55 7.47 -51.93 -0.39 1.16 16 39 H 0.05 1.34 7.67 -51.93 -0.40 0.95 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -32.10 331.95 -8.36 -40.45 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.79 Total: 1.45 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -2.33 Total: 4.15 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.34 Total: -53.50 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.13 Total: -14.28 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.10 -8.36 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032481288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.830 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds