Wall clock time and date at job start Tue Mar 31 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50694 * 109.46970 * 2 1 4 4 C 1.35127 * 125.62015 * 89.99603 * 3 2 1 5 5 C 1.40372 * 107.11794 * 179.97438 * 4 3 2 6 6 C 1.36547 * 106.70616 * 0.02562 * 5 4 3 7 7 C 1.46653 * 125.98698 * 179.97438 * 6 5 4 8 8 O 1.21694 * 119.99937 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99827 * 180.02562 * 7 6 5 10 10 C 1.47873 * 126.94763 * 359.97438 * 9 7 6 11 11 C 1.58432 * 104.83272 * 182.30266 * 10 9 7 12 12 H 1.08997 * 116.62182 * 159.51623 * 11 10 9 13 13 C 1.57437 * 99.61966 * 32.32875 * 11 10 9 14 14 C 1.49292 * 126.94377 * 180.02562 * 9 7 6 15 15 H 1.09001 * 116.15446 * 15.84247 * 14 9 7 16 16 C 1.56021 * 104.09432 * 246.69698 * 14 9 7 17 17 N 1.47864 * 105.10416 * 287.92273 * 16 14 9 18 18 C 1.36938 * 126.94685 * 181.97612 * 17 16 14 19 19 H 1.07999 * 120.00325 * 180.02562 * 18 17 16 20 20 C 1.38815 * 119.99817 * 0.02779 * 18 17 16 21 21 N 1.31621 * 119.99673 * 359.71804 * 20 18 17 22 22 Si 1.86795 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47274 * 89.99913 * 22 20 18 24 24 H 1.48505 * 109.47015 * 209.99478 * 22 20 18 25 25 H 1.48498 * 109.47362 * 329.99904 * 22 20 18 26 26 O 1.33939 * 125.61469 * 270.23710 * 3 2 1 27 27 H 1.09002 * 109.46656 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47120 * 300.00606 * 1 2 3 29 29 H 1.09000 * 109.46775 * 60.00587 * 1 2 3 30 30 H 1.08994 * 109.47120 * 239.99394 * 2 1 3 31 31 H 1.09000 * 109.46775 * 119.99413 * 2 1 3 32 32 H 1.07997 * 126.44419 * 359.96629 * 4 3 2 33 33 H 1.07994 * 126.64783 * 180.02562 * 5 4 3 34 34 H 1.08995 * 110.31256 * 300.90921 * 10 9 7 35 35 H 1.08997 * 110.31019 * 62.99270 * 10 9 7 36 36 H 1.09001 * 112.52781 * 192.40379 * 13 11 10 37 37 H 1.09000 * 112.31808 * 64.86881 * 13 11 10 38 38 H 1.08995 * 110.31611 * 169.01169 * 16 14 9 39 39 H 1.09002 * 110.30947 * 46.82382 * 16 14 9 40 40 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1628 1.0984 5 6 2.7389 3.4176 0.6530 6 6 2.7245 3.3773 -0.7118 7 6 3.1108 4.4701 -1.6103 8 8 3.4868 5.5321 -1.1502 9 7 3.0493 4.2982 -2.9456 10 6 2.6187 3.0809 -3.6662 11 6 2.8064 3.4298 -5.2002 12 1 2.8797 2.5869 -5.8874 13 6 4.0505 4.3895 -5.1014 14 6 3.4032 5.2981 -3.9963 15 1 3.9904 6.1549 -3.6658 16 6 2.0424 5.6198 -4.6884 17 7 1.7156 4.4117 -5.4760 18 6 0.6294 4.2283 -6.2894 19 1 0.5001 3.2940 -6.8153 20 6 -0.3057 5.2435 -6.4379 21 7 -0.1511 6.3802 -5.7925 22 14 -1.7872 4.9937 -7.5479 23 1 -2.9055 4.4175 -6.7588 24 1 -2.2049 6.3001 -8.1174 25 1 -1.4290 4.0650 -8.6499 26 8 2.2881 2.1576 -1.0889 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.1832 1.8494 2.1259 33 1 3.0348 4.2530 1.2701 34 1 3.2503 2.2358 -3.3925 35 1 1.5746 2.8595 -3.4448 36 1 4.2344 4.9316 -6.0290 37 1 4.9428 3.8752 -4.7445 38 1 2.1468 6.4831 -5.3454 39 1 1.2714 5.8036 -3.9401 40 1 -0.8047 7.0894 -5.8960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032481288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:06 Heat of formation + Delta-G solvation = 15.806349 kcal Electronic energy + Delta-G solvation = -23674.107120 eV Core-core repulsion = 20263.522142 eV Total energy + Delta-G solvation = -3410.584978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.73716 -41.46634 -39.36778 -35.59371 -35.13139 -33.88888 -33.39688 -31.05375 -30.22034 -29.60360 -27.02721 -25.93620 -24.78460 -23.32965 -22.34744 -21.63876 -21.31551 -20.46953 -19.29985 -18.23800 -17.66051 -17.41457 -17.02251 -16.33821 -16.09087 -15.77170 -15.29733 -15.04794 -14.79675 -14.38784 -14.04911 -13.98739 -13.76389 -13.60590 -13.42184 -13.25276 -13.14693 -12.89128 -12.72208 -12.47085 -12.36615 -12.20139 -12.06317 -11.94424 -11.90977 -11.56740 -11.43233 -11.05023 -10.77356 -9.82876 -9.42761 -8.94150 -7.86621 -5.22741 -0.01444 1.32611 1.45678 1.47306 1.51886 1.56244 1.98107 2.08678 2.47042 3.28018 3.32035 3.45184 3.67942 3.76728 3.82824 3.93057 3.96830 4.14678 4.23533 4.33679 4.49457 4.51144 4.54778 4.62047 4.72365 4.83443 4.87763 4.94560 4.97522 5.01028 5.05735 5.08108 5.19953 5.32936 5.40827 5.44381 5.47955 5.61951 5.92848 6.06909 6.43418 6.88277 7.00307 7.68040 8.38503 9.24946 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.005188 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.686143 B = 5395.331032 C = 6304.445895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 C 0.020 3.980 4 C -0.221 4.221 5 C -0.121 4.121 6 C -0.105 4.105 7 C 0.604 3.396 8 O -0.572 6.572 9 N -0.601 5.601 10 C 0.098 3.902 11 C 0.139 3.861 12 H 0.140 0.860 13 C -0.125 4.125 14 C 0.101 3.899 15 H 0.121 0.879 16 C 0.187 3.813 17 N -0.616 5.616 18 C -0.232 4.232 19 H 0.097 0.903 20 C -0.072 4.072 21 N -0.958 5.958 22 Si 0.979 3.021 23 H -0.292 1.292 24 H -0.300 1.300 25 H -0.260 1.260 26 O -0.167 6.167 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.189 0.811 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.026 0.974 39 H -0.006 1.006 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 -15.539 10.581 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.080 4.080 3 C -0.033 4.033 4 C -0.240 4.240 5 C -0.142 4.142 6 C -0.156 4.156 7 C 0.394 3.606 8 O -0.455 6.455 9 N -0.332 5.332 10 C -0.027 4.027 11 C 0.032 3.968 12 H 0.158 0.842 13 C -0.164 4.164 14 C -0.002 4.002 15 H 0.139 0.861 16 C 0.061 3.939 17 N -0.340 5.340 18 C -0.360 4.360 19 H 0.114 0.886 20 C -0.264 4.264 21 N -0.608 5.608 22 Si 0.807 3.193 23 H -0.219 1.219 24 H -0.227 1.227 25 H -0.184 1.184 26 O -0.063 6.063 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.147 0.853 32 H 0.206 0.794 33 H 0.180 0.820 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.044 0.956 39 H 0.012 0.988 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.926 -14.959 10.457 19.521 hybrid contribution -1.272 1.007 -0.247 1.641 sum 5.654 -13.953 10.210 18.190 Atomic orbital electron populations 1.21808 0.93532 1.03677 1.01843 1.20435 0.96488 0.84743 1.06381 1.23783 0.99444 0.96334 0.83711 1.21896 1.07960 0.92871 1.01228 1.22188 0.99830 1.00036 0.92150 1.21774 1.12982 0.86142 0.94729 1.16555 0.77972 0.85412 0.80611 1.90788 1.51588 1.27035 1.76120 1.49143 1.62883 1.17219 1.03935 1.23630 0.98666 0.85829 0.94530 1.24157 0.87276 0.93568 0.91795 0.84203 1.24088 0.97410 0.97298 0.97600 1.24282 0.96975 0.92953 0.85963 0.86140 1.21539 0.90916 0.89560 0.91896 1.45523 1.24158 1.12492 1.51824 1.19557 0.98306 0.99817 1.18341 0.88557 1.25693 1.02181 0.96238 1.02285 1.70161 1.37359 1.06004 1.47229 0.85067 0.79113 0.76518 0.78584 1.21926 1.22677 1.18405 1.84108 1.64477 1.21775 1.35962 0.89048 0.91988 0.94493 0.88935 0.85263 0.79384 0.81993 0.89343 0.93639 0.89100 0.87894 0.95626 0.98808 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.90 71.99 0.71 -1.49 16 2 C -0.04 -0.60 6.47 29.85 0.19 -0.41 16 3 C 0.02 0.46 6.57 24.97 0.16 0.62 16 4 C -0.22 -4.87 10.77 22.07 0.24 -4.63 16 5 C -0.12 -3.55 10.62 22.39 0.24 -3.31 16 6 C -0.10 -3.68 6.97 24.07 0.17 -3.51 16 7 C 0.60 25.01 7.86 86.44 0.68 25.69 16 8 O -0.57 -26.47 17.21 -4.33 -0.07 -26.55 16 9 N -0.60 -24.03 2.95 -768.08 -2.27 -26.30 16 10 C 0.10 3.51 5.11 88.06 0.45 3.96 16 11 C 0.14 5.00 5.63 47.95 0.27 5.27 16 12 H 0.14 4.18 8.14 -2.39 -0.02 4.16 16 13 C -0.12 -4.01 6.85 33.57 0.23 -3.78 16 14 C 0.10 4.06 5.19 46.91 0.24 4.30 16 15 H 0.12 4.69 8.05 -2.39 -0.02 4.67 16 16 C 0.19 9.58 4.75 87.17 0.41 10.00 16 17 N -0.62 -30.28 3.02 -643.02 -1.94 -32.22 16 18 C -0.23 -12.44 10.38 84.03 0.87 -11.57 16 19 H 0.10 4.76 7.83 -2.91 -0.02 4.74 16 20 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 21 N -0.96 -59.23 10.56 21.65 0.23 -59.00 16 22 Si 0.98 45.62 29.55 68.60 2.03 47.64 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 26 O -0.17 -5.19 8.52 -5.14 -0.04 -5.23 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.16 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.09 2.61 7.76 -2.39 -0.02 2.59 16 35 H 0.05 1.89 7.94 -2.39 -0.02 1.87 16 36 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.03 1.45 7.47 -2.39 -0.02 1.44 16 39 H -0.01 -0.39 7.67 -2.39 -0.02 -0.40 16 40 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -75.01 331.95 4.30 -70.71 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.03 Total: 13.39 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.34 Total: 17.56 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -3.98 Total: -117.52 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.12 Total: -31.78 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.01 4.30 -70.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032481288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.519 kcal (2) G-P(sol) polarization free energy of solvation -75.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds