Wall clock time and date at job start Tue Mar 31 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00356 * 2 1 4 4 N 1.46499 * 109.46987 * 125.00057 * 3 2 1 5 5 C 1.46506 * 120.00055 * 270.00363 * 4 3 2 6 6 C 1.50697 * 109.46876 * 269.99991 * 5 4 3 7 7 H 1.08006 * 120.00477 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99886 * 180.02562 * 6 5 4 9 9 N 1.31504 * 119.99953 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99709 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47080 * 90.00229 * 10 8 6 12 12 H 1.48503 * 109.47008 * 209.99587 * 10 8 6 13 13 H 1.48500 * 109.47585 * 329.99912 * 10 8 6 14 14 C 1.34775 * 119.99925 * 90.00443 * 4 3 2 15 15 O 1.21280 * 119.99930 * 180.02562 * 14 4 3 16 16 C 1.50697 * 119.99971 * 359.97438 * 14 4 3 17 17 O 1.42902 * 109.47205 * 180.02562 * 16 14 4 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38650 * 120.78792 * 269.71759 * 19 18 17 21 21 C 1.38207 * 119.16129 * 179.79528 * 20 19 18 22 22 N 1.31868 * 120.76474 * 0.49389 * 21 20 19 23 23 C 1.31874 * 121.72157 * 359.73831 * 22 21 20 24 24 C 1.38199 * 120.77057 * 0.02562 * 23 22 21 25 25 H 1.08000 * 119.99821 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00224 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99363 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47134 * 5.00284 * 3 2 1 29 29 H 1.09000 * 109.47161 * 245.00348 * 3 2 1 30 30 H 1.08997 * 109.47087 * 30.00200 * 5 4 3 31 31 H 1.08998 * 109.46674 * 150.00089 * 5 4 3 32 32 H 0.97004 * 120.00013 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47017 * 60.00358 * 16 14 4 34 34 H 1.08999 * 109.47472 * 300.00035 * 16 14 4 35 35 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 36 36 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 37 37 H 1.07998 * 120.42060 * 0.02562 * 20 19 18 38 38 H 1.07997 * 119.61581 * 180.20726 * 21 20 19 39 39 H 1.07998 * 119.61429 * 180.02562 * 23 22 21 40 40 H 1.07991 * 120.42226 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.5589 1.8647 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3034 3.8369 1.6366 8 6 2.5195 4.0663 3.6088 9 7 1.9610 3.4653 4.6366 10 14 2.8740 5.8990 3.6779 11 1 1.7014 6.6499 3.1617 12 1 3.1385 6.2994 5.0833 13 1 4.0640 6.2049 2.8438 14 6 4.2497 0.8660 0.9823 15 8 5.0197 0.8877 1.9191 16 6 4.6969 0.3172 -0.3480 17 8 6.0569 -0.1111 -0.2538 18 6 6.5815 -0.6517 -1.4681 19 6 8.0137 -1.0693 -1.2547 20 6 9.0536 -0.1817 -1.4854 21 6 10.3543 -0.5988 -1.2748 22 7 10.6115 -1.8268 -0.8688 23 6 9.6481 -2.6988 -0.6440 24 6 8.3231 -2.3519 -0.8285 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 1.4888 1.6964 2.5460 31 1 3.0990 1.3600 3.2259 32 1 1.7322 3.9739 5.4302 33 1 4.6120 1.0937 -1.1084 34 1 4.0677 -0.5297 -0.6218 35 1 5.9911 -1.5186 -1.7649 36 1 6.5361 0.1044 -2.2519 37 1 8.8497 0.8240 -1.8220 38 1 11.1697 0.0875 -1.4490 39 1 9.8974 -3.6957 -0.3118 40 1 7.5387 -3.0706 -0.6431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117762468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:44 Heat of formation + Delta-G solvation = -16.999249 kcal Electronic energy + Delta-G solvation = -22138.855831 eV Core-core repulsion = 18726.848295 eV Total energy + Delta-G solvation = -3412.007536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33153 -39.28413 -37.49161 -35.65752 -33.40413 -33.16142 -32.11036 -31.37724 -29.08615 -27.32489 -26.12371 -25.31164 -23.63838 -22.59784 -22.17380 -20.05577 -18.64422 -17.29004 -16.82263 -16.76674 -16.44991 -16.16699 -15.73175 -15.65729 -15.25556 -14.64567 -14.33763 -14.13320 -13.88652 -13.80589 -13.45405 -13.06450 -12.49099 -12.46138 -12.00207 -11.74633 -11.73951 -11.65185 -11.29346 -11.09643 -10.90991 -10.61634 -10.19753 -9.93530 -9.78876 -9.66454 -9.65353 -9.30826 -9.25787 -8.90086 -8.44551 -7.74603 -6.05362 -4.10291 0.96724 0.97919 2.37153 3.23478 3.29288 3.33296 3.36907 3.42096 3.74517 4.19195 4.30486 4.43620 4.50770 4.64035 4.86573 4.94685 4.99306 5.05931 5.12890 5.19619 5.22253 5.29068 5.33295 5.38437 5.44327 5.58472 5.61038 5.77772 5.94707 6.11692 6.13419 6.51192 6.72204 6.80760 6.90618 7.12148 7.42271 7.50957 7.78776 7.90875 8.21256 8.32987 8.87924 9.04122 9.54743 11.02814 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.003573 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.929772 B = 7834.156633 C = 9090.155339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.134 3.866 4 N -0.592 5.592 5 C 0.249 3.751 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.506 3.494 15 O -0.517 6.517 16 C 0.044 3.956 17 O -0.353 6.353 18 C 0.097 3.903 19 C -0.041 4.041 20 C -0.150 4.150 21 C 0.095 3.905 22 N -0.484 5.484 23 C 0.094 3.906 24 C -0.151 4.151 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -10.395 -16.888 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.010 3.990 4 N -0.326 5.326 5 C 0.130 3.870 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.291 3.709 15 O -0.392 6.392 16 C -0.036 4.036 17 O -0.271 6.271 18 C 0.021 3.979 19 C -0.050 4.050 20 C -0.170 4.170 21 C -0.062 4.062 22 N -0.194 5.194 23 C -0.062 4.062 24 C -0.171 4.171 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.174 0.826 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.667 -10.567 -15.864 20.193 hybrid contribution -1.075 1.248 -0.265 1.669 sum 5.592 -9.319 -16.129 19.449 Atomic orbital electron populations 1.23832 0.95820 1.01849 1.00197 1.23425 0.96477 0.98944 1.00248 1.20616 0.93267 0.95559 0.89513 1.48190 1.09971 1.60574 1.13835 1.19296 0.95417 0.93778 0.78466 1.21433 1.40680 0.93280 1.01325 0.92421 1.24933 0.95032 0.98814 0.95285 1.69930 1.41998 1.36174 1.05158 0.86495 0.78591 0.84914 0.77413 1.20641 1.21053 1.19866 1.19890 0.82713 0.79365 0.88949 1.90714 1.52227 1.54869 1.41400 1.22430 0.83911 0.99400 0.97870 1.88122 1.25861 1.81342 1.31813 1.21344 0.90388 0.98173 0.88032 1.20000 0.94781 0.93788 0.96384 1.22116 0.93564 1.00530 1.00794 1.22766 0.95713 0.92762 0.94930 1.67660 1.37417 1.03178 1.11114 1.22759 0.88533 0.99061 0.95885 1.22093 0.98435 0.96936 0.99597 0.88196 0.88727 0.87823 0.89157 0.90976 0.94772 0.93820 0.92684 0.90698 0.90830 0.91906 0.91847 0.84512 0.82562 0.82592 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 14.32 29.01 0.42 -1.76 16 2 C -0.17 -2.29 9.74 -36.03 -0.35 -2.64 16 3 C 0.13 2.06 5.65 -5.20 -0.03 2.03 16 4 N -0.59 -12.35 2.44 -176.44 -0.43 -12.78 16 5 C 0.25 6.50 5.16 -5.19 -0.03 6.48 16 6 C -0.53 -14.95 9.39 -34.44 -0.32 -15.28 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 10 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.51 10.70 7.75 -10.99 -0.09 10.62 16 15 O -0.52 -13.76 16.08 -14.35 -0.23 -13.99 16 16 C 0.04 0.65 4.97 36.00 0.18 0.83 16 17 O -0.35 -5.68 9.86 -55.14 -0.54 -6.23 16 18 C 0.10 1.07 6.11 36.01 0.22 1.29 16 19 C -0.04 -0.48 5.55 -104.32 -0.58 -1.06 16 20 C -0.15 -1.63 9.82 -39.44 -0.39 -2.02 16 21 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16 22 N -0.48 -5.90 10.36 -13.25 -0.14 -6.03 16 23 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 24 C -0.15 -1.61 9.82 -39.44 -0.39 -1.99 16 25 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 26 H 0.09 0.99 8.06 -52.49 -0.42 0.56 16 27 H 0.10 1.28 7.83 -52.48 -0.41 0.87 16 28 H 0.09 1.44 7.72 -51.93 -0.40 1.04 16 29 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 30 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.08 0.92 7.40 -51.93 -0.38 0.54 16 34 H 0.07 0.87 7.77 -51.93 -0.40 0.46 16 35 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -36.14 352.09 -7.82 -43.95 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.65 Total: -1.00 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -1.84 Total: -0.19 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.17 Total: -44.69 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.77 Total: -20.22 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.14 -7.82 -43.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117762468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.952 kcal (2) G-P(sol) polarization free energy of solvation -36.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds