Wall clock time and date at job start Tue Mar 31 2020 06:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00356 * 2 1 4 4 N 1.46499 * 109.46987 * 125.00057 * 3 2 1 5 5 C 1.46506 * 120.00055 * 270.00363 * 4 3 2 6 6 C 1.50697 * 109.46876 * 269.99991 * 5 4 3 7 7 H 1.08006 * 120.00477 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99886 * 180.02562 * 6 5 4 9 9 N 1.31504 * 119.99953 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99709 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47080 * 90.00229 * 10 8 6 12 12 H 1.48503 * 109.47008 * 209.99587 * 10 8 6 13 13 H 1.48500 * 109.47585 * 329.99912 * 10 8 6 14 14 C 1.34775 * 119.99925 * 90.00443 * 4 3 2 15 15 O 1.21280 * 119.99930 * 180.02562 * 14 4 3 16 16 C 1.50697 * 119.99971 * 359.97438 * 14 4 3 17 17 O 1.42902 * 109.47205 * 180.02562 * 16 14 4 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38650 * 120.78792 * 269.71759 * 19 18 17 21 21 C 1.38207 * 119.16129 * 179.79528 * 20 19 18 22 22 N 1.31868 * 120.76474 * 0.49389 * 21 20 19 23 23 C 1.31874 * 121.72157 * 359.73831 * 22 21 20 24 24 C 1.38199 * 120.77057 * 0.02562 * 23 22 21 25 25 H 1.08000 * 119.99821 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.00224 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99363 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47134 * 5.00284 * 3 2 1 29 29 H 1.09000 * 109.47161 * 245.00348 * 3 2 1 30 30 H 1.08997 * 109.47087 * 30.00200 * 5 4 3 31 31 H 1.08998 * 109.46674 * 150.00089 * 5 4 3 32 32 H 0.97004 * 120.00013 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47017 * 60.00358 * 16 14 4 34 34 H 1.08999 * 109.47472 * 300.00035 * 16 14 4 35 35 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 36 36 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 37 37 H 1.07998 * 120.42060 * 0.02562 * 20 19 18 38 38 H 1.07997 * 119.61581 * 180.20726 * 21 20 19 39 39 H 1.07998 * 119.61429 * 180.02562 * 23 22 21 40 40 H 1.07991 * 120.42226 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.5589 1.8647 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3034 3.8369 1.6366 8 6 2.5195 4.0663 3.6088 9 7 1.9610 3.4653 4.6366 10 14 2.8740 5.8990 3.6779 11 1 1.7014 6.6499 3.1617 12 1 3.1385 6.2994 5.0833 13 1 4.0640 6.2049 2.8438 14 6 4.2497 0.8660 0.9823 15 8 5.0197 0.8877 1.9191 16 6 4.6969 0.3172 -0.3480 17 8 6.0569 -0.1111 -0.2538 18 6 6.5815 -0.6517 -1.4681 19 6 8.0137 -1.0693 -1.2547 20 6 9.0536 -0.1817 -1.4854 21 6 10.3543 -0.5988 -1.2748 22 7 10.6115 -1.8268 -0.8688 23 6 9.6481 -2.6988 -0.6440 24 6 8.3231 -2.3519 -0.8285 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 1.4888 1.6964 2.5460 31 1 3.0990 1.3600 3.2259 32 1 1.7322 3.9739 5.4302 33 1 4.6120 1.0937 -1.1084 34 1 4.0677 -0.5297 -0.6218 35 1 5.9911 -1.5186 -1.7649 36 1 6.5361 0.1044 -2.2519 37 1 8.8497 0.8240 -1.8220 38 1 11.1697 0.0875 -1.4490 39 1 9.8974 -3.6957 -0.3118 40 1 7.5387 -3.0706 -0.6431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117762468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:44 Heat of formation + Delta-G solvation = -40.569862 kcal Electronic energy + Delta-G solvation = -22139.877930 eV Core-core repulsion = 18726.848295 eV Total energy + Delta-G solvation = -3413.029634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16532 -40.78302 -38.63357 -37.19278 -35.13681 -34.18833 -33.67632 -32.14990 -30.66016 -28.72678 -27.21508 -26.81257 -24.52071 -24.42243 -22.98027 -21.21719 -20.10313 -18.69527 -18.34589 -17.89044 -17.67264 -17.34550 -16.86255 -16.80537 -16.51585 -16.09705 -15.83364 -15.41413 -14.81221 -14.72325 -14.57988 -14.30893 -14.20272 -13.84645 -13.37502 -13.22725 -12.98777 -12.85808 -12.73152 -12.56572 -12.46378 -12.24803 -12.19129 -11.68607 -10.83385 -10.75079 -10.65037 -10.54187 -10.47757 -10.30215 -10.09121 -9.50620 -8.23277 -6.38083 0.13559 0.19600 1.32058 1.36121 1.39576 1.49611 1.75230 2.08318 2.38178 2.76956 3.06648 3.15728 3.56748 3.61881 3.79112 3.85323 4.02250 4.12866 4.14489 4.19910 4.24689 4.30986 4.43659 4.44275 4.49320 4.69779 4.86001 4.88319 4.98182 4.98791 5.07265 5.21282 5.34875 5.49753 5.72748 5.74758 5.75375 5.94193 6.04175 6.06054 6.68252 6.74199 6.99073 7.26961 7.44225 8.84136 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.003573 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.929772 B = 7834.156633 C = 9090.155339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.186 4.186 3 C 0.129 3.871 4 N -0.595 5.595 5 C 0.265 3.735 6 C -0.544 4.544 7 H 0.055 0.945 8 C 0.007 3.993 9 N -0.928 5.928 10 Si 0.968 3.032 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.273 1.273 14 C 0.493 3.507 15 O -0.588 6.588 16 C 0.059 3.941 17 O -0.394 6.394 18 C 0.095 3.905 19 C -0.061 4.061 20 C -0.159 4.159 21 C 0.083 3.917 22 N -0.510 5.510 23 C 0.083 3.917 24 C -0.158 4.158 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.025 0.975 31 H -0.007 1.007 32 H 0.267 0.733 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.179 0.821 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 -10.297 -19.429 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.205 4.205 3 C 0.008 3.992 4 N -0.327 5.327 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.792 3.208 11 H -0.185 1.185 12 H -0.208 1.208 13 H -0.198 1.198 14 C 0.281 3.719 15 O -0.469 6.469 16 C -0.019 4.019 17 O -0.313 6.313 18 C 0.020 3.980 19 C -0.070 4.070 20 C -0.179 4.179 21 C -0.073 4.073 22 N -0.220 5.220 23 C -0.073 4.073 24 C -0.177 4.177 25 H 0.116 0.884 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.098 0.902 29 H 0.130 0.870 30 H 0.043 0.957 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.170 0.830 38 H 0.195 0.805 39 H 0.196 0.804 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.062 -10.483 -18.474 22.090 hybrid contribution -0.921 1.155 0.517 1.565 sum 5.142 -9.328 -17.958 20.879 Atomic orbital electron populations 1.24060 0.95633 1.02868 0.98122 1.23346 0.96808 0.98299 1.02027 1.20926 0.92832 0.96575 0.88882 1.48166 1.11273 1.59837 1.13418 1.18696 0.93905 0.92690 0.80301 1.21726 1.40665 0.94400 1.01513 0.92644 1.25874 0.94645 1.03858 0.94816 1.70054 1.42841 1.38132 1.05777 0.85408 0.78921 0.79014 0.77424 1.18545 1.20785 1.19776 1.21123 0.81791 0.78160 0.90820 1.90670 1.54097 1.57748 1.44345 1.22339 0.84339 1.01545 0.93719 1.88067 1.26299 1.82059 1.34880 1.21600 0.89989 0.99788 0.86662 1.20309 0.95507 0.94312 0.96844 1.22375 0.93581 1.01247 1.00707 1.23177 0.96623 0.92860 0.94656 1.67689 1.38319 1.03983 1.11990 1.23201 0.88592 0.99918 0.95592 1.22373 0.98948 0.97264 0.99130 0.88374 0.86583 0.86462 0.90236 0.86969 0.95708 0.98894 0.92404 0.87302 0.86917 0.89201 0.89498 0.83048 0.80517 0.80378 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 14.32 67.78 0.97 -2.73 16 2 C -0.19 -4.49 9.74 25.65 0.25 -4.24 16 3 C 0.13 3.73 5.65 85.63 0.48 4.22 16 4 N -0.60 -24.90 2.44 -830.51 -2.03 -26.92 16 5 C 0.27 14.44 5.16 85.63 0.44 14.88 16 6 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 7 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 8 C 0.01 0.41 5.46 84.66 0.46 0.87 16 9 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 10 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 14 C 0.49 20.88 7.75 87.66 0.68 21.56 16 15 O -0.59 -32.68 16.08 16.01 0.26 -32.42 16 16 C 0.06 1.60 4.97 71.24 0.35 1.96 16 17 O -0.39 -11.93 9.86 -129.94 -1.28 -13.22 16 18 C 0.10 1.80 6.11 71.24 0.44 2.24 16 19 C -0.06 -1.32 5.55 -19.67 -0.11 -1.43 16 20 C -0.16 -3.29 9.82 22.36 0.22 -3.07 16 21 C 0.08 1.74 11.18 84.68 0.95 2.69 16 22 N -0.51 -12.15 10.36 -195.85 -2.03 -14.18 16 23 C 0.08 1.71 11.18 84.68 0.95 2.65 16 24 C -0.16 -3.15 9.82 22.36 0.22 -2.93 16 25 H 0.10 2.17 7.84 -2.91 -0.02 2.15 16 26 H 0.12 2.05 8.06 -2.91 -0.02 2.03 16 27 H 0.12 2.53 7.83 -2.91 -0.02 2.51 16 28 H 0.08 2.46 7.72 -2.39 -0.02 2.44 16 29 H 0.11 2.30 6.44 -2.39 -0.02 2.29 16 30 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 31 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 32 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 33 H 0.11 2.20 7.40 -2.39 -0.02 2.18 16 34 H 0.11 2.16 7.77 -2.39 -0.02 2.14 16 35 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.09 1.21 8.10 -2.39 -0.02 1.20 16 37 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 39 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -83.49 352.09 4.79 -78.70 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.02 Total: 11.97 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.54 Total: 5.34 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -3.77 Total: -97.50 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -1.02 Total: -45.64 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -83.49 4.79 -78.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117762468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.126 kcal (2) G-P(sol) polarization free energy of solvation -83.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds